Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47388 * 240.00227 * 2 1 3 5 5 C 1.53000 * 109.47399 * 175.00397 * 4 2 1 6 6 C 1.52995 * 109.47399 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.47157 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00028 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00020 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00065 * 180.02562 * 8 7 6 11 11 N 1.31625 * 120.00064 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00000 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47404 * 90.00488 * 12 10 8 14 14 H 1.48507 * 109.47310 * 210.00406 * 12 10 8 15 15 H 1.48502 * 109.46939 * 330.00320 * 12 10 8 16 16 N 1.46498 * 109.46823 * 119.99908 * 2 1 3 17 17 C 1.34780 * 120.00066 * 275.00189 * 16 2 1 18 18 O 1.21275 * 119.99956 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99725 * 180.02562 * 17 16 2 20 20 H 1.09005 * 109.47400 * 304.99840 * 19 17 16 21 21 C 1.52996 * 109.47394 * 65.00215 * 19 17 16 22 22 O 1.42905 * 109.47127 * 184.99834 * 19 17 16 23 23 C 1.35939 * 116.99929 * 155.17056 * 22 19 17 24 24 C 1.38702 * 120.03375 * 5.19969 * 23 22 19 25 25 C 1.38148 * 119.97326 * 180.25053 * 24 23 22 26 26 C 1.38461 * 120.02930 * 0.02562 * 25 24 23 27 27 F 1.35105 * 119.96745 * 179.97438 * 26 25 24 28 28 C 1.38451 * 120.05609 * 359.97438 * 26 25 24 29 29 C 1.38143 * 120.03576 * 359.97438 * 28 26 25 30 30 H 1.08991 * 109.47633 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.46916 * 59.99944 * 1 2 3 32 32 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47167 * 294.99783 * 4 2 1 34 34 H 1.08999 * 109.47185 * 54.99737 * 4 2 1 35 35 H 1.09007 * 109.46922 * 299.99545 * 5 4 2 36 36 H 1.08999 * 109.47491 * 59.99527 * 5 4 2 37 37 H 1.08997 * 109.47167 * 299.99386 * 6 5 4 38 38 H 1.09002 * 109.47396 * 60.00075 * 6 5 4 39 39 H 0.97000 * 119.99484 * 0.02562 * 7 6 5 40 40 H 0.97001 * 119.99879 * 180.02562 * 11 10 8 41 41 H 0.97003 * 120.00268 * 95.00335 * 16 2 1 42 42 H 1.08997 * 109.47335 * 59.99743 * 21 19 17 43 43 H 1.09000 * 109.47478 * 180.02562 * 21 19 17 44 44 H 1.09005 * 109.47153 * 299.99470 * 21 19 17 45 45 H 1.08001 * 120.01624 * 0.24429 * 24 23 22 46 46 H 1.08004 * 119.99115 * 179.97438 * 25 24 23 47 47 H 1.08010 * 119.98109 * 180.02562 * 28 26 25 48 48 H 1.07996 * 120.01912 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3339 -2.5631 7 7 5.5349 -1.2300 -2.6251 8 6 6.2187 -1.8032 -3.6639 9 1 5.6816 -2.3322 -4.4373 10 6 7.6020 -1.7053 -3.7223 11 7 8.2592 -2.2558 -4.7210 12 14 8.5309 -0.7910 -2.3842 13 1 8.8922 -1.7366 -1.2977 14 1 9.7668 -0.1984 -2.9559 15 1 7.6723 0.2891 -1.8351 16 7 2.0182 -0.6906 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6497 -0.7286 3.5875 20 1 2.0289 -1.6034 3.7812 21 6 4.0978 -1.1697 3.3657 22 8 2.5878 0.1569 4.7075 23 6 2.4948 -0.4113 5.9389 24 6 2.5722 -1.7894 6.0753 25 6 2.4723 -2.3658 7.3268 26 6 2.2944 -1.5685 8.4447 27 9 2.1964 -2.1336 9.6680 28 6 2.2169 -0.1927 8.3100 29 6 2.3176 0.3864 7.0599 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.8533 0.4370 -1.3573 36 1 3.9995 -1.0728 -0.4259 37 1 3.7866 -2.3842 -2.5200 38 1 3.6403 -0.8739 -3.4507 39 1 6.0172 -0.7552 -1.9302 40 1 9.2260 -2.1877 -4.7616 41 1 2.2490 -1.6318 1.1527 42 1 4.7185 -0.2950 3.1720 43 1 4.4613 -1.6839 4.2554 44 1 4.1451 -1.8452 2.5115 45 1 2.7105 -2.4117 5.2035 46 1 2.5322 -3.4389 7.4333 47 1 2.0785 0.4281 9.1829 48 1 2.2567 1.4595 6.9550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485748588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = -90.653694 kcal Electronic energy + Delta-G solvation = -28520.567321 eV Core-core repulsion = 24297.525197 eV Total energy + Delta-G solvation = -4223.042124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20335 -41.07321 -39.81154 -37.76251 -36.78552 -35.08308 -33.31422 -32.31145 -31.60866 -30.88026 -29.80739 -29.57615 -26.03136 -25.21777 -23.80712 -23.00107 -22.48756 -21.13989 -21.00298 -20.65315 -18.93531 -17.94356 -17.74120 -17.54458 -16.70691 -16.41857 -16.14291 -15.84558 -15.21583 -14.99009 -14.83025 -14.73120 -14.40352 -14.22276 -13.99755 -13.80632 -13.66910 -13.57795 -13.18775 -13.06198 -12.79855 -12.67494 -12.61633 -12.34713 -12.27916 -12.14344 -11.76546 -11.42364 -11.34847 -11.25479 -11.04244 -10.95103 -10.59063 -10.46496 -10.14784 -10.00044 -9.67384 -9.62029 -9.33346 -8.92142 -8.55227 -7.25865 -5.79455 -3.15062 0.66344 0.74772 2.18738 2.28272 3.09673 3.19602 3.34840 3.37964 3.43185 3.86791 4.08743 4.21857 4.27434 4.34547 4.43030 4.56030 4.57012 4.63940 4.81097 4.87125 4.98001 4.99705 5.17052 5.21171 5.27809 5.34970 5.39385 5.46815 5.50254 5.60509 5.62185 5.68459 5.68695 5.74562 5.77655 5.86428 5.92383 6.02132 6.05302 6.19867 6.22472 6.28429 6.69722 6.73153 6.83145 7.19006 7.90402 7.96783 8.39750 9.18876 9.91391 10.11178 11.38934 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.002182 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.605202 B =12829.194217 C =14372.157023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.934 5.934 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.716 5.716 17 C 0.520 3.480 18 O -0.517 6.517 19 C 0.066 3.934 20 H 0.099 0.901 21 C -0.180 4.180 22 O -0.281 6.281 23 C 0.125 3.875 24 C -0.185 4.185 25 C -0.111 4.111 26 C 0.057 3.943 27 F -0.142 7.142 28 C -0.112 4.112 29 C -0.121 4.121 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.402 0.598 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.445 0.944 24.641 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.029 3.971 7 N -0.403 5.403 8 C -0.375 4.375 9 H 0.107 0.893 10 C -0.193 4.193 11 N -0.582 5.582 12 Si 0.716 3.284 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 N -0.370 5.370 17 C 0.304 3.696 18 O -0.391 6.391 19 C 0.006 3.994 20 H 0.117 0.883 21 C -0.237 4.237 22 O -0.193 6.193 23 C 0.079 3.921 24 C -0.204 4.204 25 C -0.129 4.129 26 C 0.037 3.963 27 F -0.120 7.120 28 C -0.130 4.130 29 C -0.139 4.139 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.236 0.764 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.608 1.882 24.434 30.176 hybrid contribution 0.972 -0.247 1.007 1.421 sum -16.635 1.635 25.441 30.441 Atomic orbital electron populations 1.22178 0.95170 1.02167 1.02631 1.21097 0.93814 0.97827 0.83408 0.89151 1.21849 0.96587 1.01028 0.96661 1.21793 0.94091 1.01460 0.99455 1.20628 0.84903 0.97069 0.94456 1.42729 1.01729 1.67028 1.28832 1.19067 0.89893 1.27375 1.01147 0.89256 1.24694 0.96220 1.00537 0.97856 1.69707 1.07322 1.49369 1.31819 0.86531 0.79766 0.79953 0.82172 1.21105 1.21687 1.20341 1.45987 1.67503 1.14201 1.09304 1.19966 0.78142 0.87456 0.84067 1.90748 1.48445 1.15405 1.84501 1.22275 0.99198 0.92835 0.85139 0.88335 1.22380 0.93902 1.03468 1.03987 1.86246 1.87572 1.34144 1.11329 1.19087 0.96114 0.91513 0.85405 1.21195 1.06969 0.93779 0.98440 1.20954 1.00300 1.00657 0.91031 1.17597 1.06757 0.91556 0.80370 1.91499 1.94016 1.85401 1.41133 1.20983 1.00773 0.93071 0.98214 1.20326 1.03531 1.00833 0.89226 0.92284 0.91291 0.92377 0.91121 0.89882 0.91927 0.92151 0.95678 0.95640 0.80734 0.93051 0.76363 0.90236 0.90471 0.89697 0.84151 0.84313 0.83942 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.38 2.57 -67.94 -0.17 1.21 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -1.21 4.75 -26.73 -0.13 -1.34 16 5 C -0.13 -1.76 5.21 -26.73 -0.14 -1.90 16 6 C 0.16 2.85 6.26 -4.04 -0.03 2.82 16 7 N -0.76 -17.78 5.41 -59.91 -0.32 -18.10 16 8 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 9 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 10 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 11 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 12 Si 0.89 22.05 27.73 -169.99 -4.71 17.34 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 16 N -0.72 -6.32 4.49 -53.81 -0.24 -6.56 16 17 C 0.52 5.72 7.14 -10.98 -0.08 5.64 16 18 O -0.52 -7.94 16.17 -14.30 -0.23 -8.17 16 19 C 0.07 0.56 2.64 -27.89 -0.07 0.48 16 20 H 0.10 0.57 6.31 -51.93 -0.33 0.24 16 21 C -0.18 -1.34 9.12 37.16 0.34 -1.00 16 22 O -0.28 -3.02 9.34 -39.41 -0.37 -3.39 16 23 C 0.12 1.13 6.60 -39.23 -0.26 0.87 16 24 C -0.19 -1.34 8.24 -39.44 -0.33 -1.67 16 25 C -0.11 -0.80 10.02 -39.53 -0.40 -1.19 16 26 C 0.06 0.46 7.30 -39.42 -0.29 0.18 16 27 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 28 C -0.11 -0.83 10.02 -39.54 -0.40 -1.22 16 29 C -0.12 -0.99 9.98 -39.44 -0.39 -1.38 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.36 8.26 5.53 -40.82 -0.23 8.04 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.40 2.55 8.39 -40.82 -0.34 2.21 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.49 6.91 -51.93 -0.36 0.13 16 44 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 45 H 0.14 0.72 5.42 -52.49 -0.28 0.44 16 46 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -35.39 400.07 -8.69 -44.07 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.41 Total: 5.20 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.24 Total: -6.65 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.21 Total: -53.19 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.60 Total: -11.56 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.39 -8.69 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485748588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.580 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds