Wall clock time and date at job start Tue Mar 31 2020 22:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47125 * 2 1 4 4 C 1.52995 * 109.47388 * 240.00227 * 2 1 3 5 5 C 1.53000 * 109.47399 * 175.00397 * 4 2 1 6 6 C 1.52995 * 109.47399 * 180.02562 * 5 4 2 7 7 N 1.46505 * 109.47157 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00028 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00020 * 359.97438 * 8 7 6 10 10 C 1.38807 * 120.00065 * 180.02562 * 8 7 6 11 11 N 1.31625 * 120.00064 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00000 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47404 * 90.00488 * 12 10 8 14 14 H 1.48507 * 109.47310 * 210.00406 * 12 10 8 15 15 H 1.48502 * 109.46939 * 330.00320 * 12 10 8 16 16 N 1.46498 * 109.46823 * 119.99908 * 2 1 3 17 17 C 1.34780 * 120.00066 * 275.00189 * 16 2 1 18 18 O 1.21275 * 119.99956 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99725 * 180.02562 * 17 16 2 20 20 H 1.09005 * 109.47400 * 304.99840 * 19 17 16 21 21 C 1.52996 * 109.47394 * 65.00215 * 19 17 16 22 22 O 1.42905 * 109.47127 * 184.99834 * 19 17 16 23 23 C 1.35939 * 116.99929 * 155.17056 * 22 19 17 24 24 C 1.38702 * 120.03375 * 5.19969 * 23 22 19 25 25 C 1.38148 * 119.97326 * 180.25053 * 24 23 22 26 26 C 1.38461 * 120.02930 * 0.02562 * 25 24 23 27 27 F 1.35105 * 119.96745 * 179.97438 * 26 25 24 28 28 C 1.38451 * 120.05609 * 359.97438 * 26 25 24 29 29 C 1.38143 * 120.03576 * 359.97438 * 28 26 25 30 30 H 1.08991 * 109.47633 * 300.00106 * 1 2 3 31 31 H 1.09004 * 109.46916 * 59.99944 * 1 2 3 32 32 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47167 * 294.99783 * 4 2 1 34 34 H 1.08999 * 109.47185 * 54.99737 * 4 2 1 35 35 H 1.09007 * 109.46922 * 299.99545 * 5 4 2 36 36 H 1.08999 * 109.47491 * 59.99527 * 5 4 2 37 37 H 1.08997 * 109.47167 * 299.99386 * 6 5 4 38 38 H 1.09002 * 109.47396 * 60.00075 * 6 5 4 39 39 H 0.97000 * 119.99484 * 0.02562 * 7 6 5 40 40 H 0.97001 * 119.99879 * 180.02562 * 11 10 8 41 41 H 0.97003 * 120.00268 * 95.00335 * 16 2 1 42 42 H 1.08997 * 109.47335 * 59.99743 * 21 19 17 43 43 H 1.09000 * 109.47478 * 180.02562 * 21 19 17 44 44 H 1.09005 * 109.47153 * 299.99470 * 21 19 17 45 45 H 1.08001 * 120.01624 * 0.24429 * 24 23 22 46 46 H 1.08004 * 119.99115 * 179.97438 * 25 24 23 47 47 H 1.08010 * 119.98109 * 180.02562 * 28 26 25 48 48 H 1.07996 * 120.01912 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3339 -2.5631 7 7 5.5349 -1.2300 -2.6251 8 6 6.2187 -1.8032 -3.6639 9 1 5.6816 -2.3322 -4.4373 10 6 7.6020 -1.7053 -3.7223 11 7 8.2592 -2.2558 -4.7210 12 14 8.5309 -0.7910 -2.3842 13 1 8.8922 -1.7366 -1.2977 14 1 9.7668 -0.1984 -2.9559 15 1 7.6723 0.2891 -1.8351 16 7 2.0182 -0.6906 1.1962 17 6 2.1469 -0.0182 2.3572 18 8 1.8589 1.1586 2.4115 19 6 2.6497 -0.7286 3.5875 20 1 2.0289 -1.6034 3.7812 21 6 4.0978 -1.1697 3.3657 22 8 2.5878 0.1569 4.7075 23 6 2.4948 -0.4113 5.9389 24 6 2.5722 -1.7894 6.0753 25 6 2.4723 -2.3658 7.3268 26 6 2.2944 -1.5685 8.4447 27 9 2.1964 -2.1336 9.6680 28 6 2.2169 -0.1927 8.3100 29 6 2.3176 0.3864 7.0599 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.8533 0.4370 -1.3573 36 1 3.9995 -1.0728 -0.4259 37 1 3.7866 -2.3842 -2.5200 38 1 3.6403 -0.8739 -3.4507 39 1 6.0172 -0.7552 -1.9302 40 1 9.2260 -2.1877 -4.7616 41 1 2.2490 -1.6318 1.1527 42 1 4.7185 -0.2950 3.1720 43 1 4.4613 -1.6839 4.2554 44 1 4.1451 -1.8452 2.5115 45 1 2.7105 -2.4117 5.2035 46 1 2.5322 -3.4389 7.4333 47 1 2.0785 0.4281 9.1829 48 1 2.2567 1.4595 6.9550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485748588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:39 Heat of formation + Delta-G solvation = -112.972714 kcal Electronic energy + Delta-G solvation = -28521.535146 eV Core-core repulsion = 24297.525197 eV Total energy + Delta-G solvation = -4224.009950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.83970 -41.76665 -40.56299 -38.45170 -37.81883 -36.60475 -34.39458 -33.66006 -32.47499 -31.93913 -30.85502 -30.21201 -27.37788 -25.93001 -24.57044 -24.21470 -23.38271 -22.51775 -21.87386 -21.44298 -19.61544 -19.53444 -18.65153 -18.38105 -17.49563 -17.13146 -16.80245 -16.59697 -16.49511 -16.00243 -15.84616 -15.72062 -15.55972 -15.36953 -14.92858 -14.79409 -14.55704 -14.38462 -14.17578 -13.94033 -13.72836 -13.57439 -13.49181 -13.39016 -13.20955 -13.07208 -12.83551 -12.78134 -12.47965 -12.12323 -12.04029 -12.01057 -11.87212 -11.82344 -11.70817 -11.54294 -10.96460 -10.85014 -10.21729 -10.14980 -9.29008 -9.17189 -8.03396 -5.36618 0.11792 0.15177 1.37283 1.40535 1.46459 1.48105 1.52861 2.47647 2.52352 2.52418 3.28030 3.29861 3.44545 3.53275 3.66869 3.71614 3.80363 3.84280 3.89765 4.11187 4.11891 4.18098 4.27354 4.40093 4.45061 4.56662 4.62381 4.65226 4.68085 4.82632 4.87081 4.87574 4.91142 5.00732 5.06492 5.11400 5.12798 5.13582 5.18807 5.31487 5.35261 5.44269 5.53961 5.65002 5.75806 6.21157 6.22250 6.49617 7.08068 7.15272 7.85573 8.03263 9.18072 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.002182 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.605202 B =12829.194217 C =14372.157023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.151 3.849 7 N -0.762 5.762 8 C -0.235 4.235 9 H 0.057 0.943 10 C -0.067 4.067 11 N -0.984 5.984 12 Si 0.957 3.043 13 H -0.273 1.273 14 H -0.298 1.298 15 H -0.255 1.255 16 N -0.703 5.703 17 C 0.516 3.484 18 O -0.569 6.569 19 C 0.067 3.933 20 H 0.131 0.869 21 C -0.177 4.177 22 O -0.308 6.308 23 C 0.108 3.892 24 C -0.181 4.181 25 C -0.109 4.109 26 C 0.040 3.960 27 F -0.149 7.149 28 C -0.111 4.111 29 C -0.134 4.134 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.020 0.980 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.417 0.583 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 0.032 26.368 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.366 4.366 9 H 0.075 0.925 10 C -0.259 4.259 11 N -0.635 5.635 12 Si 0.784 3.216 13 H -0.199 1.199 14 H -0.225 1.225 15 H -0.180 1.180 16 N -0.357 5.357 17 C 0.302 3.698 18 O -0.447 6.447 19 C 0.008 3.992 20 H 0.149 0.851 21 C -0.234 4.234 22 O -0.221 6.221 23 C 0.063 3.937 24 C -0.199 4.199 25 C -0.128 4.128 26 C 0.021 3.979 27 F -0.128 7.128 28 C -0.129 4.129 29 C -0.152 4.152 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.182 0.818 46 H 0.177 0.823 47 H 0.176 0.824 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.537 0.940 26.180 32.092 hybrid contribution 1.154 -0.003 0.403 1.222 sum -17.383 0.938 26.582 31.775 Atomic orbital electron populations 1.22112 0.93954 1.03194 1.02239 1.20985 0.94679 0.96646 0.83581 0.91639 1.21755 0.93708 1.02499 0.96934 1.21676 0.96568 1.00054 0.97334 1.20861 0.81983 0.98032 0.96602 1.42793 1.03851 1.66552 1.27584 1.19069 0.90139 1.26146 1.01272 0.92510 1.25551 0.97380 1.02276 1.00650 1.69891 1.07480 1.51677 1.34403 0.85382 0.77953 0.79150 0.79109 1.19935 1.22457 1.17992 1.45905 1.66503 1.14815 1.08512 1.20485 0.77265 0.86942 0.85144 1.90726 1.50891 1.17726 1.85376 1.22399 1.00292 0.93016 0.83543 0.85126 1.22392 0.92672 1.02919 1.05432 1.86213 1.87981 1.35624 1.12270 1.19312 0.96977 0.92491 0.84943 1.21405 1.06070 0.93154 0.99292 1.21217 0.99313 1.01694 0.90580 1.17853 1.07523 0.92060 0.80483 1.91480 1.94169 1.85510 1.41653 1.21148 1.00103 0.93197 0.98500 1.20477 1.04016 1.01158 0.89571 0.93993 0.90438 0.90572 0.88930 0.89252 0.93051 0.91132 0.94981 0.96167 0.80241 0.93350 0.74536 0.92473 0.89077 0.87877 0.81808 0.82266 0.82358 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 2 C 0.15 2.53 2.57 44.99 0.12 2.64 16 3 H 0.07 1.51 7.58 -2.39 -0.02 1.49 16 4 C -0.11 -1.85 4.75 30.59 0.15 -1.71 16 5 C -0.12 -2.90 5.21 30.59 0.16 -2.74 16 6 C 0.15 5.21 6.26 86.38 0.54 5.75 16 7 N -0.76 -34.66 5.41 -343.45 -1.86 -36.52 16 8 C -0.24 -13.32 10.47 84.03 0.88 -12.44 16 9 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 10 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 11 N -0.98 -62.87 13.97 21.65 0.30 -62.57 16 12 Si 0.96 45.15 27.73 68.60 1.90 47.05 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 15 H -0.26 -10.96 6.52 99.48 0.65 -10.31 16 16 N -0.70 -10.71 4.49 -442.55 -1.99 -12.69 16 17 C 0.52 10.71 7.14 87.66 0.63 11.34 16 18 O -0.57 -17.64 16.17 15.97 0.26 -17.38 16 19 C 0.07 1.00 2.64 29.85 0.08 1.08 16 20 H 0.13 1.05 6.31 -2.38 -0.02 1.04 16 21 C -0.18 -2.19 9.12 71.98 0.66 -1.53 16 22 O -0.31 -6.39 9.34 -73.88 -0.69 -7.08 16 23 C 0.11 1.82 6.60 22.49 0.15 1.97 16 24 C -0.18 -2.17 8.24 22.36 0.18 -1.99 16 25 C -0.11 -1.32 10.02 22.30 0.22 -1.10 16 26 C 0.04 0.60 7.30 22.37 0.16 0.77 16 27 F -0.15 -2.54 17.27 44.97 0.78 -1.77 16 28 C -0.11 -1.54 10.02 22.30 0.22 -1.32 16 29 C -0.13 -2.13 9.98 22.36 0.22 -1.91 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.59 7.75 -2.39 -0.02 1.58 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.36 15.85 5.53 -92.71 -0.51 15.34 16 40 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.42 3.75 8.39 -92.71 -0.78 2.97 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.88 6.91 -2.39 -0.02 0.86 16 44 H 0.10 0.87 7.93 -2.38 -0.02 0.85 16 45 H 0.16 1.06 5.42 -2.91 -0.02 1.05 16 46 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -79.00 400.07 3.85 -75.15 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.37 Total: 22.15 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.52 Total: -6.34 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.54 Total: -111.78 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.43 Total: -24.46 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -79.00 3.85 -75.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485748588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.822 kcal (2) G-P(sol) polarization free energy of solvation -79.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds