Wall clock time and date at job start Tue Mar 31 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46849 * 2 1 4 4 O 1.42904 * 109.46836 * 120.00130 * 2 1 3 5 5 C 1.35945 * 116.99895 * 275.03265 * 4 2 1 6 6 C 1.38710 * 120.02750 * 5.43948 * 5 4 2 7 7 C 1.38157 * 119.96745 * 179.97438 * 6 5 4 8 8 C 1.38458 * 120.02774 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.96797 * 179.97438 * 8 7 6 10 10 C 1.38450 * 120.06328 * 0.25511 * 8 7 6 11 11 C 1.38160 * 120.02897 * 359.49144 * 10 8 7 12 12 C 1.50695 * 109.46912 * 239.99855 * 2 1 3 13 13 O 1.21288 * 119.99914 * 244.99761 * 12 2 1 14 14 N 1.34776 * 120.00284 * 64.99976 * 12 2 1 15 15 C 1.46496 * 120.00293 * 179.97438 * 14 12 2 16 16 H 1.09000 * 109.47485 * 325.00009 * 15 14 12 17 17 C 1.52997 * 109.47207 * 85.00154 * 15 14 12 18 18 C 1.53005 * 109.47442 * 205.00321 * 15 14 12 19 19 C 1.52999 * 109.47062 * 65.00064 * 18 15 14 20 20 C 1.52998 * 109.47090 * 180.02562 * 19 18 15 21 21 N 1.46506 * 109.46950 * 179.97438 * 20 19 18 22 22 C 1.36942 * 119.99563 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00234 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99554 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00223 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 90.00375 * 26 24 22 28 28 H 1.48502 * 109.47007 * 210.00177 * 26 24 22 29 29 H 1.48501 * 109.47219 * 330.00416 * 26 24 22 30 30 H 1.08995 * 109.47327 * 299.99881 * 1 2 3 31 31 H 1.08996 * 109.47508 * 60.00288 * 1 2 3 32 32 H 1.09008 * 109.46966 * 179.97438 * 1 2 3 33 33 H 1.07991 * 120.01708 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.98315 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.98812 * 179.71858 * 10 8 7 36 36 H 1.07993 * 120.01394 * 180.22811 * 11 10 8 37 37 H 0.96997 * 119.99946 * 0.02562 * 14 12 2 38 38 H 1.09004 * 109.47305 * 179.97438 * 17 15 14 39 39 H 1.08996 * 109.47347 * 300.00097 * 17 15 14 40 40 H 1.09007 * 109.47118 * 60.00251 * 17 15 14 41 41 H 1.08995 * 109.47343 * 184.99886 * 18 15 14 42 42 H 1.09001 * 109.46882 * 305.00392 * 18 15 14 43 43 H 1.09004 * 109.47065 * 300.00150 * 19 18 15 44 44 H 1.09000 * 109.47364 * 59.99999 * 19 18 15 45 45 H 1.08995 * 109.46918 * 299.99578 * 20 19 18 46 46 H 1.09001 * 109.47279 * 60.00067 * 20 19 18 47 47 H 0.96994 * 120.00104 * 359.97438 * 21 20 19 48 48 H 0.97000 * 120.00381 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1118 0.0626 2.3047 6 6 1.6588 1.3735 2.3278 7 6 1.7662 2.1204 3.4850 8 6 2.3251 1.5609 4.6215 9 9 2.4300 2.2926 5.7523 10 6 2.7819 0.2542 4.5985 11 6 2.6711 -0.4968 3.4441 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7918 -0.1943 -2.4520 15 6 2.2806 -0.8846 -3.6481 16 1 3.2409 -1.3522 -3.4309 17 6 1.2733 -1.9582 -4.0647 18 6 2.4505 0.1243 -4.7857 19 6 3.5477 1.1258 -4.4197 20 6 3.7172 2.1350 -5.5570 21 7 4.7675 3.0943 -5.2062 22 6 5.0973 4.0975 -6.0779 23 1 4.5830 4.1819 -7.0238 24 6 6.0921 5.0068 -5.7453 25 7 6.7186 4.9043 -4.5923 26 14 6.5417 6.3757 -6.9341 27 1 5.7031 7.5690 -6.6549 28 1 7.9746 6.7272 -6.7653 29 1 6.3047 5.9192 -8.3272 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2225 1.8099 1.4416 34 1 1.4140 3.1412 3.5032 35 1 3.2218 -0.1796 5.4843 36 1 3.0241 -1.5172 3.4275 37 1 1.2958 0.6347 -2.5392 38 1 1.6367 -2.4715 -4.9550 39 1 1.1523 -2.6770 -3.2544 40 1 0.3129 -1.4906 -4.2821 41 1 2.7285 -0.4014 -5.6992 42 1 1.5118 0.6555 -4.9435 43 1 3.2697 1.6515 -3.5062 44 1 4.4864 0.5947 -4.2618 45 1 3.9950 1.6096 -6.4706 46 1 2.7784 2.6661 -5.7144 47 1 5.2291 3.0188 -4.3565 48 1 7.4139 5.5394 -4.3600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485748590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:48 Heat of formation + Delta-G solvation = -94.723574 kcal Electronic energy + Delta-G solvation = -28488.789087 eV Core-core repulsion = 24265.570480 eV Total energy + Delta-G solvation = -4223.218608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.08856 -40.97718 -39.71263 -37.65846 -36.66588 -34.89112 -33.25374 -32.25082 -31.48825 -30.69471 -29.56255 -29.37483 -25.77029 -25.16085 -23.71572 -23.10097 -22.55718 -21.15185 -20.82988 -20.54879 -18.84699 -17.85045 -17.63799 -17.04030 -16.61225 -16.23104 -16.11128 -15.76242 -15.15307 -15.00852 -14.72497 -14.63693 -14.29703 -14.09336 -13.82252 -13.65254 -13.56519 -13.49737 -13.16209 -13.02444 -12.86439 -12.68915 -12.53042 -12.26998 -12.15700 -12.09091 -11.37642 -11.31544 -11.22438 -11.14642 -10.88421 -10.83780 -10.51418 -10.44833 -10.03911 -9.91838 -9.71043 -9.55500 -9.24062 -8.88588 -8.44355 -6.93593 -5.77706 -3.06700 0.78112 0.86297 2.27886 2.37166 3.21303 3.27955 3.42083 3.47077 3.49190 3.98621 4.17695 4.32727 4.36692 4.42535 4.50481 4.55423 4.71141 4.74731 4.90515 4.97220 5.01614 5.08655 5.16001 5.25662 5.36468 5.49088 5.50235 5.55610 5.57090 5.59010 5.72421 5.75546 5.79398 5.85045 5.89365 6.00958 6.05066 6.15339 6.30348 6.31513 6.36813 6.37629 6.82583 6.85999 6.92828 7.27853 7.68168 7.99183 8.41257 9.52068 10.10759 10.44905 11.45204 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008410 B = 0.002418 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.617653 B =11576.108916 C =14308.161383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.063 3.937 3 H 0.102 0.898 4 O -0.281 6.281 5 C 0.124 3.876 6 C -0.184 4.184 7 C -0.110 4.110 8 C 0.057 3.943 9 F -0.142 7.142 10 C -0.112 4.112 11 C -0.120 4.120 12 C 0.520 3.480 13 O -0.517 6.517 14 N -0.715 5.715 15 C 0.142 3.858 16 H 0.090 0.910 17 C -0.162 4.162 18 C -0.123 4.123 19 C -0.126 4.126 20 C 0.153 3.847 21 N -0.735 5.735 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 -12.358 14.550 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.003 3.997 3 H 0.120 0.880 4 O -0.193 6.193 5 C 0.078 3.922 6 C -0.202 4.202 7 C -0.129 4.129 8 C 0.038 3.962 9 F -0.120 7.120 10 C -0.131 4.131 11 C -0.139 4.139 12 C 0.304 3.696 13 O -0.392 6.392 14 N -0.369 5.369 15 C 0.039 3.961 16 H 0.108 0.892 17 C -0.221 4.221 18 C -0.161 4.161 19 C -0.164 4.164 20 C 0.025 3.975 21 N -0.379 5.379 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.159 -13.205 14.473 25.396 hybrid contribution 0.181 1.643 -0.256 1.673 sum -15.978 -11.562 14.217 24.312 Atomic orbital electron populations 1.22341 0.92409 1.04514 1.04060 1.22270 0.95842 0.97398 0.84185 0.88001 1.86230 1.80900 1.36641 1.15555 1.19075 0.95757 0.90370 0.86996 1.21200 1.05569 0.93881 0.99582 1.20965 0.99554 1.00907 0.91441 1.17594 1.04551 0.90693 0.83365 1.91495 1.94475 1.77003 1.49074 1.20975 1.00444 0.92557 0.99113 1.20308 1.01924 1.01506 0.90162 1.19950 0.79991 0.85545 0.84066 1.90748 1.39099 1.23007 1.86322 1.45967 1.57939 1.27795 1.05193 1.21092 0.98341 0.92905 0.83791 0.89156 1.22177 0.99281 0.98793 1.01830 1.21859 1.00015 0.96822 0.97415 1.21742 0.98130 0.96874 0.99657 1.20647 0.92094 0.90112 0.94628 1.42384 1.42062 1.31889 1.21554 1.19236 1.15068 1.04333 0.98525 0.91211 1.24758 0.99230 0.99718 0.97381 1.69660 1.27715 1.38778 1.22071 0.86186 0.77490 0.82244 0.80251 1.21720 1.21731 1.20757 0.90511 0.90009 0.90561 0.84146 0.84264 0.83966 0.83910 0.76385 0.91383 0.92275 0.92441 0.90082 0.91325 0.92145 0.91884 0.96469 0.96584 0.78347 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.13 37.16 0.34 -0.77 16 2 C 0.06 0.58 2.64 -27.88 -0.07 0.51 16 3 H 0.10 0.79 6.31 -51.93 -0.33 0.46 16 4 O -0.28 -3.24 9.34 -39.43 -0.37 -3.61 16 5 C 0.12 1.25 6.60 -39.24 -0.26 1.00 16 6 C -0.18 -1.58 8.24 -39.44 -0.33 -1.91 16 7 C -0.11 -0.95 10.02 -39.53 -0.40 -1.35 16 8 C 0.06 0.55 7.30 -39.42 -0.29 0.26 16 9 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 10 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 11 C -0.12 -1.12 9.99 -39.44 -0.39 -1.51 16 12 C 0.52 6.14 7.14 -10.99 -0.08 6.06 16 13 O -0.52 -8.34 16.17 -14.31 -0.23 -8.58 16 14 N -0.72 -6.91 4.49 -53.81 -0.24 -7.15 16 15 C 0.14 1.50 2.57 -67.93 -0.17 1.32 16 16 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 17 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 18 C -0.12 -1.33 4.75 -26.73 -0.13 -1.45 16 19 C -0.13 -1.89 5.22 -26.73 -0.14 -2.03 16 20 C 0.15 2.97 6.26 -4.04 -0.03 2.95 16 21 N -0.73 -18.70 5.60 -59.91 -0.34 -19.04 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 26 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.08 0.42 6.91 -51.93 -0.36 0.06 16 31 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.14 0.92 5.43 -52.49 -0.28 0.64 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.40 2.91 8.39 -40.82 -0.34 2.57 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -34.89 403.20 -9.05 -43.94 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.45 Total: 6.95 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.23 Total: -6.84 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.15 Total: -53.90 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.60 Total: -12.19 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.89 -9.05 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485748590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.785 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds