Wall clock time and date at job start Tue Mar 31 2020 22:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46849 * 2 1 4 4 O 1.42904 * 109.46836 * 120.00130 * 2 1 3 5 5 C 1.35945 * 116.99895 * 275.03265 * 4 2 1 6 6 C 1.38710 * 120.02750 * 5.43948 * 5 4 2 7 7 C 1.38157 * 119.96745 * 179.97438 * 6 5 4 8 8 C 1.38458 * 120.02774 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.96797 * 179.97438 * 8 7 6 10 10 C 1.38450 * 120.06328 * 0.25511 * 8 7 6 11 11 C 1.38160 * 120.02897 * 359.49144 * 10 8 7 12 12 C 1.50695 * 109.46912 * 239.99855 * 2 1 3 13 13 O 1.21288 * 119.99914 * 244.99761 * 12 2 1 14 14 N 1.34776 * 120.00284 * 64.99976 * 12 2 1 15 15 C 1.46496 * 120.00293 * 179.97438 * 14 12 2 16 16 H 1.09000 * 109.47485 * 325.00009 * 15 14 12 17 17 C 1.52997 * 109.47207 * 85.00154 * 15 14 12 18 18 C 1.53005 * 109.47442 * 205.00321 * 15 14 12 19 19 C 1.52999 * 109.47062 * 65.00064 * 18 15 14 20 20 C 1.52998 * 109.47090 * 180.02562 * 19 18 15 21 21 N 1.46506 * 109.46950 * 179.97438 * 20 19 18 22 22 C 1.36942 * 119.99563 * 179.97438 * 21 20 19 23 23 H 1.07995 * 120.00234 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99554 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00223 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 90.00375 * 26 24 22 28 28 H 1.48502 * 109.47007 * 210.00177 * 26 24 22 29 29 H 1.48501 * 109.47219 * 330.00416 * 26 24 22 30 30 H 1.08995 * 109.47327 * 299.99881 * 1 2 3 31 31 H 1.08996 * 109.47508 * 60.00288 * 1 2 3 32 32 H 1.09008 * 109.46966 * 179.97438 * 1 2 3 33 33 H 1.07991 * 120.01708 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.98315 * 179.97438 * 7 6 5 35 35 H 1.07995 * 119.98812 * 179.71858 * 10 8 7 36 36 H 1.07993 * 120.01394 * 180.22811 * 11 10 8 37 37 H 0.96997 * 119.99946 * 0.02562 * 14 12 2 38 38 H 1.09004 * 109.47305 * 179.97438 * 17 15 14 39 39 H 1.08996 * 109.47347 * 300.00097 * 17 15 14 40 40 H 1.09007 * 109.47118 * 60.00251 * 17 15 14 41 41 H 1.08995 * 109.47343 * 184.99886 * 18 15 14 42 42 H 1.09001 * 109.46882 * 305.00392 * 18 15 14 43 43 H 1.09004 * 109.47065 * 300.00150 * 19 18 15 44 44 H 1.09000 * 109.47364 * 59.99999 * 19 18 15 45 45 H 1.08995 * 109.46918 * 299.99578 * 20 19 18 46 46 H 1.09001 * 109.47279 * 60.00067 * 20 19 18 47 47 H 0.96994 * 120.00104 * 359.97438 * 21 20 19 48 48 H 0.97000 * 120.00381 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1118 0.0626 2.3047 6 6 1.6588 1.3735 2.3278 7 6 1.7662 2.1204 3.4850 8 6 2.3251 1.5609 4.6215 9 9 2.4300 2.2926 5.7523 10 6 2.7819 0.2542 4.5985 11 6 2.6711 -0.4968 3.4441 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7918 -0.1943 -2.4520 15 6 2.2806 -0.8846 -3.6481 16 1 3.2409 -1.3522 -3.4309 17 6 1.2733 -1.9582 -4.0647 18 6 2.4505 0.1243 -4.7857 19 6 3.5477 1.1258 -4.4197 20 6 3.7172 2.1350 -5.5570 21 7 4.7675 3.0943 -5.2062 22 6 5.0973 4.0975 -6.0779 23 1 4.5830 4.1819 -7.0238 24 6 6.0921 5.0068 -5.7453 25 7 6.7186 4.9043 -4.5923 26 14 6.5417 6.3757 -6.9341 27 1 5.7031 7.5690 -6.6549 28 1 7.9746 6.7272 -6.7653 29 1 6.3047 5.9192 -8.3272 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2225 1.8099 1.4416 34 1 1.4140 3.1412 3.5032 35 1 3.2218 -0.1796 5.4843 36 1 3.0241 -1.5172 3.4275 37 1 1.2958 0.6347 -2.5392 38 1 1.6367 -2.4715 -4.9550 39 1 1.1523 -2.6770 -3.2544 40 1 0.3129 -1.4906 -4.2821 41 1 2.7285 -0.4014 -5.6992 42 1 1.5118 0.6555 -4.9435 43 1 3.2697 1.6515 -3.5062 44 1 4.4864 0.5947 -4.2618 45 1 3.9950 1.6096 -6.4706 46 1 2.7784 2.6661 -5.7144 47 1 5.2291 3.0188 -4.3565 48 1 7.4139 5.5394 -4.3600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485748590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:47 Heat of formation + Delta-G solvation = -116.131198 kcal Electronic energy + Delta-G solvation = -28489.717392 eV Core-core repulsion = 24265.570480 eV Total energy + Delta-G solvation = -4224.146912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84394 -41.75888 -40.55769 -38.43798 -37.76524 -36.49745 -34.38670 -33.55032 -32.34594 -31.76717 -30.70135 -30.21311 -27.23054 -25.90599 -24.82990 -24.30140 -23.40752 -22.40504 -21.89235 -21.42195 -19.55033 -19.13067 -18.63304 -18.38734 -17.47916 -17.06179 -16.85660 -16.63546 -16.52073 -15.97141 -15.81616 -15.72012 -15.41241 -15.27270 -15.11505 -14.76141 -14.46661 -14.36592 -14.16767 -13.94572 -13.68903 -13.43742 -13.39511 -13.21762 -13.14545 -13.01041 -12.77623 -12.75364 -12.37818 -12.24699 -12.08407 -12.00811 -11.86518 -11.81096 -11.69659 -11.49347 -10.92937 -10.84774 -10.21734 -10.14261 -9.17239 -9.00259 -7.95804 -5.24985 0.11692 0.14964 1.46912 1.47206 1.49062 1.53620 1.57621 2.51309 2.53722 2.55814 3.29754 3.38116 3.46184 3.63232 3.69520 3.72060 3.80785 3.88151 3.99022 4.11703 4.12017 4.27209 4.29823 4.41152 4.46350 4.59614 4.65489 4.68419 4.70679 4.83977 4.87255 4.87996 4.93370 5.01280 5.06412 5.10919 5.12537 5.13921 5.18397 5.32884 5.36863 5.44158 5.51227 5.54490 5.64784 6.21627 6.26816 6.49450 7.15299 7.32440 8.10149 8.31523 9.27906 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008410 B = 0.002418 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.617653 B =11576.108916 C =14308.161383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.062 3.938 3 H 0.119 0.881 4 O -0.307 6.307 5 C 0.108 3.892 6 C -0.182 4.182 7 C -0.111 4.111 8 C 0.040 3.960 9 F -0.149 7.149 10 C -0.110 4.110 11 C -0.132 4.132 12 C 0.516 3.484 13 O -0.570 6.570 14 N -0.703 5.703 15 C 0.144 3.856 16 H 0.062 0.938 17 C -0.155 4.155 18 C -0.108 4.108 19 C -0.114 4.114 20 C 0.149 3.851 21 N -0.751 5.751 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.974 3.026 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.268 1.268 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.416 0.584 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.018 0.982 46 H 0.029 0.971 47 H 0.371 0.629 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -11.541 13.456 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.002 3.998 3 H 0.136 0.864 4 O -0.220 6.220 5 C 0.063 3.937 6 C -0.201 4.201 7 C -0.130 4.130 8 C 0.021 3.979 9 F -0.128 7.128 10 C -0.129 4.129 11 C -0.151 4.151 12 C 0.302 3.698 13 O -0.448 6.448 14 N -0.357 5.357 15 C 0.040 3.960 16 H 0.080 0.920 17 C -0.213 4.213 18 C -0.147 4.147 19 C -0.152 4.152 20 C 0.023 3.977 21 N -0.394 5.394 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.193 1.193 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.254 0.746 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.203 0.797 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.298 -12.382 13.340 25.808 hybrid contribution 0.807 1.340 0.064 1.566 sum -17.491 -11.042 13.403 24.647 Atomic orbital electron populations 1.22348 0.89887 1.04462 1.05909 1.22441 0.97641 0.97284 0.82410 0.86399 1.86195 1.81499 1.37877 1.16406 1.19306 0.96502 0.91112 0.86817 1.21408 1.05112 0.93199 1.00335 1.21216 0.98987 1.01756 0.91045 1.17848 1.05383 0.91139 0.83549 1.91474 1.94622 1.77190 1.49502 1.21163 0.99932 0.92290 0.99519 1.20489 1.02228 1.01983 0.90410 1.20494 0.79102 0.84994 0.85252 1.90722 1.41574 1.25417 1.87104 1.45893 1.57236 1.28045 1.04505 1.20998 0.97800 0.93283 0.83904 0.92022 1.22098 0.99686 0.97932 1.01559 1.21756 0.99392 0.95867 0.97640 1.21610 0.98921 0.96558 0.98128 1.20871 0.90697 0.89961 0.96150 1.42667 1.43327 1.32591 1.20780 1.19672 1.14548 1.04578 0.98958 0.90459 1.25612 0.99755 1.02509 0.99189 1.69823 1.28517 1.39845 1.24047 0.85125 0.76593 0.79267 0.78697 1.21144 1.22358 1.19329 0.89264 0.87486 0.91575 0.82024 0.82456 0.82179 0.83499 0.74618 0.90405 0.93905 0.90364 0.89144 0.88818 0.92084 0.93845 0.96384 0.95344 0.79728 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.13 71.98 0.66 -1.11 16 2 C 0.06 1.07 2.64 29.85 0.08 1.15 16 3 H 0.12 1.62 6.31 -2.39 -0.02 1.61 16 4 O -0.31 -7.10 9.34 -73.94 -0.69 -7.79 16 5 C 0.11 2.15 6.60 22.49 0.15 2.30 16 6 C -0.18 -2.89 8.24 22.36 0.18 -2.70 16 7 C -0.11 -1.78 10.02 22.30 0.22 -1.56 16 8 C 0.04 0.74 7.30 22.37 0.16 0.90 16 9 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 10 C -0.11 -1.85 10.02 22.30 0.22 -1.63 16 11 C -0.13 -2.47 9.99 22.36 0.22 -2.25 16 12 C 0.52 12.02 7.14 87.66 0.63 12.65 16 13 O -0.57 -19.04 16.17 15.94 0.26 -18.79 16 14 N -0.70 -12.51 4.49 -442.54 -1.99 -14.50 16 15 C 0.14 2.85 2.57 44.99 0.12 2.96 16 16 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 17 C -0.15 -2.49 9.48 71.98 0.68 -1.80 16 18 C -0.11 -2.07 4.75 30.60 0.15 -1.92 16 19 C -0.11 -3.29 5.22 30.59 0.16 -3.13 16 20 C 0.15 5.59 6.26 86.38 0.54 6.13 16 21 N -0.75 -38.04 5.60 -343.45 -1.92 -39.97 16 22 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 23 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 25 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 26 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.09 0.74 6.91 -2.39 -0.02 0.72 16 31 H 0.11 0.56 7.92 -2.39 -0.02 0.54 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.16 1.73 5.43 -2.92 -0.02 1.71 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.42 4.86 8.39 -92.71 -0.78 4.09 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.74 7.75 -2.38 -0.02 1.72 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.37 20.21 7.67 -92.71 -0.71 19.50 16 48 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -76.85 403.20 3.71 -73.14 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.51 Total: 28.73 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.48 Total: -6.92 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.63 Total: -114.01 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.43 Total: -26.58 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.85 3.71 -73.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485748590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.994 kcal (2) G-P(sol) polarization free energy of solvation -76.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds