Wall clock time and date at job start Tue Mar 31 2020 20:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 H 1.08994 * 109.47402 * 305.00008 * 3 2 1 5 5 O 1.42905 * 109.46807 * 65.00386 * 3 2 1 6 6 C 1.35956 * 116.99490 * 260.96757 * 5 3 2 7 7 C 1.38661 * 120.06506 * 5.39637 * 6 5 3 8 8 C 1.38186 * 119.96602 * 179.72072 * 7 6 5 9 9 C 1.38256 * 120.09702 * 0.55227 * 8 7 6 10 10 C 1.38265 * 120.12579 * 359.72516 * 9 8 7 11 11 C 1.38330 * 120.03031 * 359.97438 * 10 9 8 12 12 F 1.35096 * 120.04790 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47182 * 184.99817 * 3 2 1 14 14 O 1.21280 * 120.00447 * 245.00193 * 13 3 2 15 15 N 1.34781 * 119.99622 * 65.00160 * 13 3 2 16 16 C 1.46508 * 119.99878 * 179.97438 * 15 13 3 17 17 C 1.52999 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46821 * 180.02562 * 17 16 15 19 19 N 1.46502 * 109.47119 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99707 * 90.00083 * 19 18 17 21 21 C 1.36937 * 119.99935 * 269.99476 * 19 18 17 22 22 H 1.08004 * 119.99703 * 23.73823 * 21 19 18 23 23 C 1.38812 * 120.00035 * 203.72572 * 21 19 18 24 24 N 1.31619 * 119.99714 * 9.71122 * 23 21 19 25 25 Si 1.86799 * 120.00057 * 189.70141 * 23 21 19 26 26 H 1.48505 * 109.46612 * 90.00434 * 25 23 21 27 27 H 1.48494 * 109.47229 * 210.00276 * 25 23 21 28 28 H 1.48494 * 109.47062 * 330.00759 * 25 23 21 29 29 H 1.09003 * 109.47255 * 299.99787 * 1 2 3 30 30 H 1.08996 * 109.47336 * 59.99732 * 1 2 3 31 31 H 1.09008 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47336 * 120.00268 * 2 1 3 33 33 H 1.09005 * 109.47049 * 240.00702 * 2 1 3 34 34 H 1.07994 * 120.01465 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.94813 * 180.27561 * 8 7 6 36 36 H 1.08005 * 119.94060 * 179.74498 * 9 8 7 37 37 H 1.08001 * 119.98238 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00312 * 0.02562 * 15 13 3 39 39 H 1.08995 * 109.47320 * 300.00574 * 16 15 13 40 40 H 1.09003 * 109.46742 * 60.00043 * 16 15 13 41 41 H 1.08999 * 109.47130 * 299.99844 * 17 16 15 42 42 H 1.08994 * 109.47061 * 60.00328 * 17 16 15 43 43 H 1.09006 * 109.47208 * 299.99681 * 18 17 16 44 44 H 1.09003 * 109.47038 * 59.99618 * 18 17 16 45 45 H 1.08997 * 109.47137 * 94.99945 * 20 19 18 46 46 H 1.09000 * 109.46811 * 214.99787 * 20 19 18 47 47 H 1.08998 * 109.47040 * 334.99383 * 20 19 18 48 48 H 0.96999 * 119.99577 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 0.5613 2.8788 1.1855 7 6 -0.2040 2.9553 0.0317 8 6 -1.3255 3.7620 -0.0004 9 6 -1.6794 4.5019 1.1126 10 6 -0.9159 4.4330 2.2633 11 6 0.2043 3.6224 2.3032 12 9 0.9503 3.5544 3.4275 13 6 3.5418 1.4444 -0.1238 14 8 4.2249 1.8612 0.7875 15 7 4.1259 0.9829 -1.2474 16 6 5.5860 0.9852 -1.3680 17 6 5.9860 0.4150 -2.7302 18 6 7.5109 0.4168 -2.8559 19 7 7.8940 -0.1298 -4.1600 20 6 8.0429 0.7619 -5.3129 21 6 8.1131 -1.4741 -4.3014 22 1 7.6568 -2.1708 -3.6137 23 6 8.9214 -1.9414 -5.3286 24 7 9.6283 -1.0947 -6.0467 25 14 9.0060 -3.7719 -5.6915 26 1 7.9618 -4.1281 -6.6856 27 1 10.3452 -4.1066 -6.2387 28 1 8.7779 -4.5359 -4.4388 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 0.0740 2.3816 -0.8400 35 1 -1.9239 3.8179 -0.8977 36 1 -2.5541 5.1347 1.0834 37 1 -1.1942 5.0123 3.1312 38 1 3.5796 0.6499 -1.9764 39 1 5.9563 2.0065 -1.2790 40 1 6.0169 0.3723 -0.5763 41 1 5.6157 -0.6063 -2.8195 42 1 5.5551 1.0283 -3.5215 43 1 7.8816 1.4380 -2.7665 44 1 7.9414 -0.1967 -2.0645 45 1 9.0891 1.0493 -5.4172 46 1 7.7161 0.2460 -6.2157 47 1 7.4342 1.6536 -5.1634 48 1 10.1934 -1.4213 -6.7642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490269447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:56 Heat of formation + Delta-G solvation = -71.680430 kcal Electronic energy + Delta-G solvation = -28763.651083 eV Core-core repulsion = 24541.431701 eV Total energy + Delta-G solvation = -4222.219382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.01442 -41.05941 -39.47258 -37.78404 -36.27583 -34.90347 -34.13423 -32.02611 -31.14488 -30.44384 -30.04992 -27.89483 -25.93891 -25.16543 -23.85960 -22.89219 -22.45538 -21.77449 -20.74569 -19.99785 -19.12430 -17.76754 -17.29653 -16.76799 -16.69023 -16.35443 -15.96575 -15.65768 -15.41795 -15.11112 -14.96808 -14.88750 -14.27836 -14.20692 -14.01238 -13.47515 -13.35751 -13.21541 -13.00979 -12.75204 -12.71347 -12.49137 -12.30900 -12.11612 -11.85029 -11.75707 -11.48599 -11.41706 -11.04573 -11.01130 -10.84516 -10.80090 -10.49969 -10.22578 -9.92216 -9.84050 -9.82256 -9.35226 -9.09805 -8.58262 -8.55605 -6.75525 -5.73313 -3.21895 0.68791 0.82011 2.28700 2.42111 3.14437 3.26830 3.36105 3.42353 3.43961 3.85700 4.17087 4.24475 4.30074 4.40531 4.46862 4.48783 4.68494 4.79131 4.81213 4.94708 5.06443 5.18729 5.20176 5.39740 5.41964 5.45067 5.52677 5.60806 5.62832 5.73176 5.76370 5.79442 5.84660 5.93822 6.05614 6.10776 6.19591 6.37502 6.45960 6.72316 6.73647 6.85603 6.90820 7.37122 7.38139 7.73129 7.79491 8.06900 8.39341 9.23151 9.85905 10.35132 11.31351 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.001862 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.472254 B =15032.786532 C =15258.774457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.064 3.936 4 H 0.104 0.896 5 O -0.273 6.273 6 C 0.101 3.899 7 C -0.188 4.188 8 C -0.089 4.089 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.070 3.930 12 F -0.130 7.130 13 C 0.508 3.492 14 O -0.517 6.517 15 N -0.721 5.721 16 C 0.121 3.879 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.604 5.604 20 C 0.163 3.837 21 C -0.255 4.255 22 H 0.068 0.932 23 C 0.001 3.999 24 N -0.909 5.909 25 Si 0.906 3.094 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.030 0.970 46 H 0.041 0.959 47 H -0.004 1.004 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.076 9.238 11.524 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.004 3.996 4 H 0.121 0.879 5 O -0.185 6.185 6 C 0.054 3.946 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.149 4.149 10 C -0.136 4.136 11 C 0.051 3.949 12 F -0.108 7.108 13 C 0.292 3.708 14 O -0.392 6.392 15 N -0.374 5.374 16 C -0.002 4.002 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.326 5.326 20 C 0.019 3.981 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.198 4.198 24 N -0.554 5.554 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.014 0.986 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.235 9.460 12.248 29.602 hybrid contribution -0.100 -1.205 -0.710 1.402 sum -25.335 8.255 11.538 29.037 Atomic orbital electron populations 1.21948 0.94363 1.02862 1.02249 1.22002 0.97423 0.93592 1.04669 1.22493 0.93669 0.95580 0.87875 0.87863 1.86297 1.41216 1.58279 1.32729 1.19107 0.88706 0.92607 0.94149 1.21320 0.97670 1.04055 0.97610 1.21022 0.95827 0.95063 0.98765 1.20950 1.00579 1.00908 0.92495 1.21060 0.93560 0.98686 1.00253 1.17031 0.93986 1.01275 0.82656 1.91532 1.75409 1.95229 1.48646 1.20175 0.89002 0.78589 0.83027 1.90761 1.64647 1.45114 1.38647 1.46050 1.08978 1.64593 1.17765 1.21522 0.77763 1.01672 0.99285 1.22544 1.01874 1.01045 0.93629 1.20599 0.90364 0.97090 0.89294 1.43893 1.80263 1.04805 1.03656 1.20800 0.97882 0.89801 0.89641 1.19190 1.23504 0.82449 1.13308 0.91438 1.25085 0.96981 0.97707 0.99987 1.70062 1.29721 1.32602 1.23049 0.86232 0.76975 0.85055 0.78129 1.21542 1.21698 1.20479 0.92094 0.92177 0.91564 0.89768 0.89280 0.83992 0.84919 0.84801 0.84023 0.76544 0.91576 0.91360 0.91476 0.92172 0.94364 0.93225 0.95127 0.93985 0.98582 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.48 37.16 0.31 -0.68 16 2 C -0.14 -1.08 5.61 -26.73 -0.15 -1.23 16 3 C 0.06 0.63 2.54 -27.88 -0.07 0.56 16 4 H 0.10 0.75 5.43 -51.93 -0.28 0.47 16 5 O -0.27 -3.47 8.99 -39.46 -0.35 -3.83 16 6 C 0.10 1.07 5.65 -39.17 -0.22 0.85 16 7 C -0.19 -1.41 7.34 -39.44 -0.29 -1.69 16 8 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 9 C -0.13 -0.77 10.04 -39.56 -0.40 -1.17 16 10 C -0.12 -0.89 10.02 -39.54 -0.40 -1.29 16 11 C 0.07 0.76 7.31 -39.30 -0.29 0.48 16 12 F -0.13 -1.70 17.11 2.25 0.04 -1.66 16 13 C 0.51 6.76 7.18 -10.98 -0.08 6.68 16 14 O -0.52 -9.38 16.51 -14.30 -0.24 -9.62 16 15 N -0.72 -8.34 5.46 -60.29 -0.33 -8.67 16 16 C 0.12 1.68 5.67 -4.04 -0.02 1.65 16 17 C -0.15 -2.35 5.65 -26.73 -0.15 -2.50 16 18 C 0.15 3.06 5.64 -4.04 -0.02 3.03 16 19 N -0.60 -14.92 2.92 -181.11 -0.53 -15.45 16 20 C 0.16 3.98 8.96 59.85 0.54 4.52 16 21 C -0.25 -6.89 9.66 -15.06 -0.15 -7.04 16 22 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 23 C 0.00 0.01 5.16 -17.43 -0.09 -0.08 16 24 N -0.91 -26.45 10.58 55.49 0.59 -25.86 16 25 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.06 0.46 6.51 -51.93 -0.34 0.13 16 30 H 0.06 0.29 6.71 -51.93 -0.35 -0.06 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.55 7.77 -51.93 -0.40 0.15 16 34 H 0.14 0.79 4.27 -52.49 -0.22 0.57 16 35 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 36 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.40 3.47 8.18 -40.82 -0.33 3.13 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 45 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 46 H 0.04 1.09 7.29 -51.93 -0.38 0.72 16 47 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -34.44 394.24 -9.07 -43.51 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.30 Total: -2.14 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.87 Total: 1.17 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.27 Total: -49.99 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.59 Total: -13.45 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.44 -9.07 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490269447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.169 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds