Wall clock time and date at job start Tue Mar 31 2020 20:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 H 1.08994 * 109.47402 * 305.00008 * 3 2 1 5 5 O 1.42905 * 109.46807 * 65.00386 * 3 2 1 6 6 C 1.35956 * 116.99490 * 260.96757 * 5 3 2 7 7 C 1.38661 * 120.06506 * 5.39637 * 6 5 3 8 8 C 1.38186 * 119.96602 * 179.72072 * 7 6 5 9 9 C 1.38256 * 120.09702 * 0.55227 * 8 7 6 10 10 C 1.38265 * 120.12579 * 359.72516 * 9 8 7 11 11 C 1.38330 * 120.03031 * 359.97438 * 10 9 8 12 12 F 1.35096 * 120.04790 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47182 * 184.99817 * 3 2 1 14 14 O 1.21280 * 120.00447 * 245.00193 * 13 3 2 15 15 N 1.34781 * 119.99622 * 65.00160 * 13 3 2 16 16 C 1.46508 * 119.99878 * 179.97438 * 15 13 3 17 17 C 1.52999 * 109.46838 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46821 * 180.02562 * 17 16 15 19 19 N 1.46502 * 109.47119 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99707 * 90.00083 * 19 18 17 21 21 C 1.36937 * 119.99935 * 269.99476 * 19 18 17 22 22 H 1.08004 * 119.99703 * 23.73823 * 21 19 18 23 23 C 1.38812 * 120.00035 * 203.72572 * 21 19 18 24 24 N 1.31619 * 119.99714 * 9.71122 * 23 21 19 25 25 Si 1.86799 * 120.00057 * 189.70141 * 23 21 19 26 26 H 1.48505 * 109.46612 * 90.00434 * 25 23 21 27 27 H 1.48494 * 109.47229 * 210.00276 * 25 23 21 28 28 H 1.48494 * 109.47062 * 330.00759 * 25 23 21 29 29 H 1.09003 * 109.47255 * 299.99787 * 1 2 3 30 30 H 1.08996 * 109.47336 * 59.99732 * 1 2 3 31 31 H 1.09008 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47336 * 120.00268 * 2 1 3 33 33 H 1.09005 * 109.47049 * 240.00702 * 2 1 3 34 34 H 1.07994 * 120.01465 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.94813 * 180.27561 * 8 7 6 36 36 H 1.08005 * 119.94060 * 179.74498 * 9 8 7 37 37 H 1.08001 * 119.98238 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00312 * 0.02562 * 15 13 3 39 39 H 1.08995 * 109.47320 * 300.00574 * 16 15 13 40 40 H 1.09003 * 109.46742 * 60.00043 * 16 15 13 41 41 H 1.08999 * 109.47130 * 299.99844 * 17 16 15 42 42 H 1.08994 * 109.47061 * 60.00328 * 17 16 15 43 43 H 1.09006 * 109.47208 * 299.99681 * 18 17 16 44 44 H 1.09003 * 109.47038 * 59.99618 * 18 17 16 45 45 H 1.08997 * 109.47137 * 94.99945 * 20 19 18 46 46 H 1.09000 * 109.46811 * 214.99787 * 20 19 18 47 47 H 1.08998 * 109.47040 * 334.99383 * 20 19 18 48 48 H 0.96999 * 119.99577 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 0.5613 2.8788 1.1855 7 6 -0.2040 2.9553 0.0317 8 6 -1.3255 3.7620 -0.0004 9 6 -1.6794 4.5019 1.1126 10 6 -0.9159 4.4330 2.2633 11 6 0.2043 3.6224 2.3032 12 9 0.9503 3.5544 3.4275 13 6 3.5418 1.4444 -0.1238 14 8 4.2249 1.8612 0.7875 15 7 4.1259 0.9829 -1.2474 16 6 5.5860 0.9852 -1.3680 17 6 5.9860 0.4150 -2.7302 18 6 7.5109 0.4168 -2.8559 19 7 7.8940 -0.1298 -4.1600 20 6 8.0429 0.7619 -5.3129 21 6 8.1131 -1.4741 -4.3014 22 1 7.6568 -2.1708 -3.6137 23 6 8.9214 -1.9414 -5.3286 24 7 9.6283 -1.0947 -6.0467 25 14 9.0060 -3.7719 -5.6915 26 1 7.9618 -4.1281 -6.6856 27 1 10.3452 -4.1066 -6.2387 28 1 8.7779 -4.5359 -4.4388 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 0.0740 2.3816 -0.8400 35 1 -1.9239 3.8179 -0.8977 36 1 -2.5541 5.1347 1.0834 37 1 -1.1942 5.0123 3.1312 38 1 3.5796 0.6499 -1.9764 39 1 5.9563 2.0065 -1.2790 40 1 6.0169 0.3723 -0.5763 41 1 5.6157 -0.6063 -2.8195 42 1 5.5551 1.0283 -3.5215 43 1 7.8816 1.4380 -2.7665 44 1 7.9414 -0.1967 -2.0645 45 1 9.0891 1.0493 -5.4172 46 1 7.7161 0.2460 -6.2157 47 1 7.4342 1.6536 -5.1634 48 1 10.1934 -1.4213 -6.7642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490269447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:55 Heat of formation + Delta-G solvation = -92.572542 kcal Electronic energy + Delta-G solvation = -28764.557033 eV Core-core repulsion = 24541.431701 eV Total energy + Delta-G solvation = -4223.125332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84917 -41.85412 -40.39314 -38.49772 -37.91041 -36.27392 -34.90441 -33.68850 -31.81204 -31.61065 -30.97454 -28.79050 -27.91342 -26.63345 -24.45931 -23.76369 -23.48760 -22.77340 -22.14370 -21.17454 -19.81880 -18.71845 -18.65310 -18.00880 -17.48247 -17.17942 -17.12274 -16.69356 -16.64751 -16.18683 -15.94719 -15.59891 -15.54585 -15.31839 -14.99059 -14.79399 -14.64688 -14.48731 -14.12803 -13.81469 -13.43590 -13.38857 -13.13507 -13.03125 -12.94133 -12.78098 -12.64952 -12.63968 -12.49325 -12.37558 -12.28421 -12.08973 -12.03458 -11.84234 -11.60733 -11.47530 -10.94153 -10.62474 -10.20599 -9.92081 -9.23386 -8.76007 -7.81055 -5.31824 0.12574 0.24093 1.38817 1.47647 1.48006 1.50020 1.57576 2.39792 2.52597 2.60526 3.23873 3.32517 3.43161 3.55315 3.65661 3.66139 3.80700 3.93399 4.11514 4.15911 4.26511 4.29789 4.34679 4.38336 4.45742 4.53088 4.64239 4.69538 4.79637 4.87661 4.92695 4.92967 5.00223 5.08246 5.09732 5.24956 5.26194 5.29243 5.30818 5.35346 5.43349 5.51361 5.65048 5.67118 5.74688 6.18430 6.34843 6.44591 7.08650 7.17299 7.88906 8.32677 9.22009 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.001862 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.472254 B =15032.786532 C =15258.774457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.068 3.932 4 H 0.136 0.864 5 O -0.309 6.309 6 C 0.076 3.924 7 C -0.186 4.186 8 C -0.080 4.080 9 C -0.124 4.124 10 C -0.118 4.118 11 C 0.026 3.974 12 F -0.156 7.156 13 C 0.506 3.494 14 O -0.574 6.574 15 N -0.705 5.705 16 C 0.131 3.869 17 C -0.126 4.126 18 C 0.148 3.852 19 N -0.621 5.621 20 C 0.177 3.823 21 C -0.259 4.259 22 H 0.073 0.927 23 C -0.058 4.058 24 N -0.942 5.942 25 Si 0.970 3.030 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.268 1.268 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.001 0.999 46 H 0.017 0.983 47 H 0.032 0.968 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.480 9.277 10.326 32.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.009 3.991 4 H 0.153 0.847 5 O -0.223 6.223 6 C 0.030 3.970 7 C -0.204 4.204 8 C -0.098 4.098 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.006 3.994 12 F -0.135 7.135 13 C 0.292 3.708 14 O -0.453 6.453 15 N -0.359 5.359 16 C 0.007 3.993 17 C -0.166 4.166 18 C 0.022 3.978 19 N -0.345 5.345 20 C 0.032 3.968 21 C -0.389 4.389 22 H 0.091 0.909 23 C -0.253 4.253 24 N -0.590 5.590 25 Si 0.799 3.201 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.193 1.193 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.256 0.744 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.036 0.964 47 H 0.050 0.950 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.698 9.493 11.053 32.184 hybrid contribution 0.885 -1.122 -0.295 1.459 sum -27.812 8.371 10.757 30.973 Atomic orbital electron populations 1.21928 0.92862 1.03568 1.02592 1.22027 0.98659 0.91986 1.04617 1.22604 0.90944 0.97161 0.88376 0.84724 1.86244 1.42601 1.59202 1.34204 1.19395 0.89021 0.93175 0.95365 1.21585 0.97635 1.04306 0.96922 1.21504 0.95027 0.93361 0.99882 1.21404 1.00786 1.00491 0.91515 1.21351 0.92610 0.97940 1.01752 1.17633 0.95577 1.03637 0.82511 1.91448 1.76368 1.95650 1.50075 1.20862 0.90534 0.77211 0.82236 1.90736 1.66207 1.47722 1.40634 1.45826 1.08144 1.63878 1.18037 1.21229 0.79243 1.01049 0.97807 1.22150 0.98491 1.01235 0.94747 1.20784 0.92978 0.97157 0.86890 1.44150 1.80608 1.04368 1.05342 1.20545 0.96653 0.90683 0.88925 1.19537 1.22637 0.83830 1.12883 0.90927 1.25876 0.97245 1.01777 1.00386 1.70239 1.30795 1.34255 1.23664 0.85213 0.76402 0.80354 0.78158 1.21045 1.22458 1.19310 0.93706 0.89802 0.90693 0.91984 0.87135 0.81979 0.81370 0.81524 0.82606 0.74409 0.91980 0.92439 0.91731 0.91189 0.93391 0.93948 0.98088 0.96424 0.94963 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.48 71.98 0.61 -0.94 16 2 C -0.14 -1.89 5.61 30.59 0.17 -1.72 16 3 C 0.07 1.28 2.54 29.85 0.08 1.36 16 4 H 0.14 1.57 5.43 -2.39 -0.01 1.55 16 5 O -0.31 -8.07 8.99 -74.07 -0.67 -8.74 16 6 C 0.08 1.60 5.65 22.53 0.13 1.73 16 7 C -0.19 -2.28 7.34 22.36 0.16 -2.12 16 8 C -0.08 -0.62 10.04 22.26 0.22 -0.40 16 9 C -0.12 -1.05 10.04 22.28 0.22 -0.83 16 10 C -0.12 -1.67 10.02 22.30 0.22 -1.45 16 11 C 0.03 0.58 7.31 22.45 0.16 0.75 16 12 F -0.16 -4.50 17.11 44.97 0.77 -3.73 16 13 C 0.51 13.23 7.18 87.66 0.63 13.86 16 14 O -0.57 -21.55 16.51 15.96 0.26 -21.29 16 15 N -0.71 -15.12 5.46 -463.04 -2.53 -17.64 16 16 C 0.13 3.48 5.67 86.38 0.49 3.97 16 17 C -0.13 -3.70 5.65 30.59 0.17 -3.52 16 18 C 0.15 5.71 5.64 86.38 0.49 6.19 16 19 N -0.62 -30.39 2.92 -726.91 -2.13 -32.51 16 20 C 0.18 8.60 8.96 127.77 1.15 9.75 16 21 C -0.26 -13.88 9.66 84.03 0.81 -13.07 16 22 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 23 C -0.06 -3.24 5.16 84.86 0.44 -2.80 16 24 N -0.94 -55.73 10.58 21.65 0.23 -55.50 16 25 Si 0.97 44.51 29.56 68.60 2.03 46.53 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.04 0.62 6.51 -2.39 -0.02 0.61 16 30 H 0.08 0.45 6.71 -2.39 -0.02 0.43 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.03 7.77 -2.38 -0.02 1.02 16 34 H 0.16 1.15 4.27 -2.91 -0.01 1.14 16 35 H 0.17 0.15 8.06 -2.91 -0.02 0.12 16 36 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.42 5.96 8.18 -92.71 -0.76 5.21 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.74 8.07 -2.38 -0.02 1.72 16 44 H 0.04 1.67 8.04 -2.39 -0.02 1.66 16 45 H 0.00 0.04 7.34 -2.39 -0.02 0.03 16 46 H 0.02 0.91 7.29 -2.39 -0.02 0.89 16 47 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 48 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -78.92 394.24 4.35 -74.57 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.21 Total: 7.55 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.16 Total: 10.75 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.42 Total: -105.66 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.40 Total: -30.02 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.77 Total: -3.73 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -78.92 4.35 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490269447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -78.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds