Wall clock time and date at job start Tue Mar 31 2020 20:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 N 1.46500 * 109.47130 * 119.99732 * 2 1 3 5 5 C 1.36934 * 120.00173 * 294.90803 * 4 2 1 6 6 H 1.07995 * 120.00474 * 37.13902 * 5 4 2 7 7 C 1.38818 * 119.99796 * 217.14593 * 5 4 2 8 8 N 1.31615 * 120.00102 * 21.26153 * 7 5 4 9 9 Si 1.86801 * 119.99717 * 201.25962 * 7 5 4 10 10 H 1.48498 * 109.47293 * 59.99977 * 9 7 5 11 11 H 1.48496 * 109.47212 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47222 * 299.99695 * 9 7 5 13 13 C 1.46504 * 120.00109 * 114.90152 * 4 2 1 14 14 C 1.53001 * 109.47100 * 270.00474 * 13 4 2 15 15 C 1.53004 * 109.47098 * 179.97438 * 14 13 4 16 16 N 1.46501 * 109.46795 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99423 * 179.97438 * 16 15 14 18 18 O 1.21276 * 120.00142 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99702 * 180.02562 * 17 16 15 20 20 O 1.42902 * 109.46839 * 179.97438 * 19 17 16 21 21 C 1.35942 * 116.99514 * 180.02562 * 20 19 17 22 22 C 1.38706 * 120.03548 * 0.27418 * 21 20 19 23 23 C 1.38151 * 119.97251 * 180.25131 * 22 21 20 24 24 C 1.38452 * 120.02645 * 359.47521 * 23 22 21 25 25 F 1.35106 * 119.96792 * 180.29738 * 24 23 22 26 26 C 1.38448 * 120.06650 * 0.27361 * 24 23 22 27 27 C 1.38153 * 120.02831 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.47111 * 303.31329 * 1 2 3 29 29 H 1.09001 * 109.47190 * 63.31355 * 1 2 3 30 30 H 1.09000 * 109.47305 * 183.30939 * 1 2 3 31 31 H 1.09003 * 109.47385 * 239.99830 * 2 1 3 32 32 H 1.08997 * 109.47129 * 181.61845 * 3 2 1 33 33 H 1.08996 * 109.47084 * 301.61645 * 3 2 1 34 34 H 1.08998 * 109.47155 * 61.61806 * 3 2 1 35 35 H 0.96999 * 119.99948 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47381 * 150.00524 * 13 4 2 37 37 H 1.09002 * 109.46961 * 30.00104 * 13 4 2 38 38 H 1.08997 * 109.47457 * 59.99206 * 14 13 4 39 39 H 1.09002 * 109.46911 * 299.99661 * 14 13 4 40 40 H 1.08997 * 109.46804 * 59.99926 * 15 14 13 41 41 H 1.08993 * 109.47233 * 299.99822 * 15 14 13 42 42 H 0.96993 * 120.00540 * 0.02562 * 16 15 14 43 43 H 1.08997 * 109.46841 * 60.00006 * 19 17 16 44 44 H 1.08993 * 109.47079 * 300.00105 * 19 17 16 45 45 H 1.08004 * 120.01396 * 0.03236 * 22 21 20 46 46 H 1.07998 * 119.98464 * 179.75265 * 23 22 21 47 47 H 1.07995 * 119.99250 * 179.97438 * 26 24 23 48 48 H 1.07994 * 120.02071 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7756 -0.1650 2.4372 6 1 0.8339 0.3219 2.6428 7 6 2.7403 -0.2581 3.4311 8 7 4.0013 -0.4529 3.1081 9 14 2.2488 -0.1068 5.2268 10 1 1.2790 -1.1788 5.5667 11 1 3.4547 -0.2399 6.0831 12 1 1.6219 1.2194 5.4584 13 6 2.7661 -1.9435 1.0648 14 6 1.7929 -3.1237 1.0929 15 6 2.5739 -4.4321 0.9550 16 7 1.6420 -5.5622 0.9826 17 6 2.1077 -6.8224 0.8754 18 8 3.2981 -7.0208 0.7557 19 6 1.1491 -7.9849 0.9032 20 8 1.8784 -9.2069 0.7734 21 6 1.1575 -10.3594 0.7794 22 6 -0.2234 -10.3140 0.9019 23 6 -0.9542 -11.4863 0.9131 24 6 -0.3099 -12.7056 0.7911 25 9 -1.0264 -13.8510 0.7961 26 6 1.0679 -12.7523 0.6635 27 6 1.8017 -11.5818 0.6571 28 1 -0.3633 0.5644 0.8588 29 1 -0.3634 0.4615 -0.9182 30 1 -0.3634 -1.0259 0.0593 31 1 1.8933 -0.5139 -0.8900 32 1 3.1296 1.4426 -0.0290 33 1 1.6532 1.9646 -0.8751 34 1 1.7006 1.9479 0.9041 35 1 4.6753 -0.5183 3.8026 36 1 3.4712 -2.0342 1.8910 37 1 3.3108 -1.9442 0.1206 38 1 1.0877 -3.0330 0.2668 39 1 1.2483 -3.1230 2.0371 40 1 3.2792 -4.5230 1.7810 41 1 3.1182 -4.4326 0.0107 42 1 0.6898 -5.4035 1.0773 43 1 0.4435 -7.8938 0.0775 44 1 0.6050 -7.9847 1.8477 45 1 -0.7267 -9.3626 0.9921 46 1 -2.0291 -11.4513 1.0125 47 1 1.5693 -13.7041 0.5688 48 1 2.8764 -11.6184 0.5572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493876726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:06 Heat of formation + Delta-G solvation = -80.684626 kcal Electronic energy + Delta-G solvation = -28086.340733 eV Core-core repulsion = 23863.730900 eV Total energy + Delta-G solvation = -4222.609833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.16863 -40.69864 -39.41265 -37.46389 -36.79206 -35.06699 -32.57568 -31.86925 -31.60977 -30.27827 -29.15264 -27.99550 -26.21340 -25.22410 -23.69272 -23.12630 -22.47552 -21.00806 -20.37382 -19.54277 -18.84017 -17.75837 -17.52500 -16.72847 -16.45062 -16.38714 -15.87647 -15.60490 -15.27895 -15.06458 -14.85437 -14.43558 -14.10881 -14.04316 -13.94392 -13.45856 -13.40202 -13.38100 -12.89637 -12.65836 -12.65080 -12.43963 -11.77487 -11.54970 -11.48653 -11.34417 -11.31465 -11.30132 -11.00056 -10.78235 -10.69169 -10.47672 -10.24618 -9.99460 -9.85382 -9.63822 -9.62402 -9.53284 -8.99337 -8.51669 -8.49199 -6.57863 -5.79725 -3.37552 0.71007 0.79445 2.31741 2.49970 3.14143 3.33596 3.41072 3.41715 3.48192 3.91195 4.20637 4.32134 4.44846 4.48086 4.62752 4.69408 4.71388 4.88527 5.12645 5.18569 5.33805 5.43007 5.59677 5.66874 5.72594 5.72988 5.77769 5.91418 5.97311 6.13680 6.24275 6.25978 6.32770 6.35484 6.41809 6.61498 6.68177 6.69903 6.76086 6.76482 6.88930 7.07449 7.18599 7.31874 7.46506 7.65895 7.82085 8.14369 8.51474 9.18483 9.81316 10.39849 11.20166 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.001794 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.720237 B =15600.541067 C =16050.426012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 C -0.145 4.145 4 N -0.578 5.578 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.894 3.106 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.150 3.850 14 C -0.145 4.145 15 C 0.122 3.878 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.519 6.519 19 C 0.039 3.961 20 O -0.284 6.284 21 C 0.124 3.876 22 C -0.184 4.184 23 C -0.111 4.111 24 C 0.056 3.944 25 F -0.142 7.142 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.400 0.600 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -19.102 -6.235 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.298 5.298 5 C -0.383 4.383 6 H 0.077 0.923 7 C -0.189 4.189 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.023 3.977 14 C -0.186 4.186 15 C -0.001 4.001 16 N -0.373 5.373 17 C 0.294 3.706 18 O -0.394 6.394 19 C -0.040 4.040 20 O -0.196 6.196 21 C 0.078 3.922 22 C -0.203 4.203 23 C -0.130 4.130 24 C 0.036 3.964 25 F -0.121 7.121 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.234 0.766 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.441 -19.221 -6.241 21.901 hybrid contribution -1.169 0.035 1.123 1.621 sum -9.610 -19.186 -5.118 22.060 Atomic orbital electron populations 1.22202 0.98929 1.00436 0.99726 1.20419 0.91938 0.92349 0.89839 1.22033 1.00843 0.97830 0.99715 1.43844 1.64344 1.20443 1.01217 1.18851 0.97460 1.34714 0.87261 0.92328 1.25164 0.94533 1.00500 0.98669 1.69967 0.99379 1.51433 1.32053 0.86525 0.77429 0.78193 0.85532 1.21034 1.21685 1.20830 1.20821 0.93073 0.82864 1.00979 1.22516 1.00459 0.94035 1.01572 1.21543 0.92184 0.84224 1.02135 1.46033 1.11577 1.05437 1.74278 1.19926 0.89134 0.83772 0.77801 1.90764 1.16218 1.84827 1.47624 1.22581 0.94623 0.83057 1.03758 1.86204 1.34332 1.11539 1.87545 1.19105 0.90135 0.86606 0.96347 1.21162 0.92710 0.99410 1.06993 1.20942 1.00958 0.90600 1.00492 1.17592 0.89760 0.81997 1.07023 1.91497 1.78106 1.48113 1.94380 1.20979 0.91976 0.99335 1.00752 1.20335 1.01227 0.88630 1.03679 0.92974 0.94639 0.93814 0.93724 0.93328 0.95213 0.92366 0.93507 0.88501 0.95694 0.93195 0.91586 0.91242 0.91744 0.76606 0.88824 0.88761 0.84278 0.84348 0.83937 0.83794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.19 37.16 0.34 -2.33 16 2 C 0.16 3.19 3.37 -67.93 -0.23 2.97 16 3 C -0.15 -2.86 9.11 37.16 0.34 -2.52 16 4 N -0.58 -13.17 2.37 -165.66 -0.39 -13.57 16 5 C -0.25 -6.40 8.04 -15.06 -0.12 -6.52 16 6 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 8 N -0.89 -24.42 11.43 55.49 0.63 -23.79 16 9 Si 0.89 20.80 29.60 -169.99 -5.03 15.76 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.15 3.20 5.28 -4.04 -0.02 3.18 16 14 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 15 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16 16 N -0.72 -8.83 5.56 -60.29 -0.33 -9.16 16 17 C 0.51 6.80 7.91 -10.98 -0.09 6.71 16 18 O -0.52 -9.48 16.50 -14.35 -0.24 -9.71 16 19 C 0.04 0.35 5.22 36.01 0.19 0.54 16 20 O -0.28 -3.31 9.67 -39.47 -0.38 -3.69 16 21 C 0.12 1.19 6.69 -39.23 -0.26 0.93 16 22 C -0.18 -1.40 9.04 -39.44 -0.36 -1.76 16 23 C -0.11 -0.84 10.02 -39.53 -0.40 -1.23 16 24 C 0.06 0.48 7.30 -39.43 -0.29 0.19 16 25 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 26 C -0.11 -0.87 10.02 -39.54 -0.40 -1.27 16 27 C -0.12 -1.05 9.99 -39.44 -0.39 -1.44 16 28 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.84 7.77 -51.93 -0.40 0.44 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.23 7.50 -51.93 -0.39 0.85 16 35 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.10 2.40 5.48 -51.93 -0.28 2.12 16 37 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.40 3.64 8.47 -40.82 -0.35 3.29 16 43 H 0.09 0.58 7.65 -51.93 -0.40 0.19 16 44 H 0.09 0.62 7.67 -51.93 -0.40 0.22 16 45 H 0.14 0.73 6.30 -52.48 -0.33 0.40 16 46 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -31.27 401.96 -9.09 -40.36 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.50 Total: 2.11 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.94 Total: -3.08 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.09 Total: -46.52 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.62 Total: -13.40 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.27 -9.09 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493876726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.324 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds