Wall clock time and date at job start Tue Mar 31 2020 20:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 H 1.08998 * 109.46972 * 305.88415 * 3 2 1 5 5 O 1.42898 * 109.47363 * 65.88512 * 3 2 1 6 6 C 1.35962 * 116.99675 * 262.47091 * 5 3 2 7 7 C 1.38662 * 120.06597 * 359.74231 * 6 5 3 8 8 C 1.38183 * 119.96757 * 179.72011 * 7 6 5 9 9 C 1.38257 * 120.09647 * 0.54939 * 8 7 6 10 10 C 1.38254 * 120.12456 * 359.72440 * 9 8 7 11 11 C 1.38337 * 120.03384 * 359.97438 * 10 9 8 12 12 F 1.35100 * 120.04907 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46926 * 185.88781 * 3 2 1 14 14 O 1.21288 * 119.99776 * 250.98880 * 13 3 2 15 15 N 1.34782 * 120.00517 * 70.99375 * 13 3 2 16 16 C 1.46498 * 120.00132 * 185.12877 * 15 13 3 17 17 C 1.46499 * 119.99675 * 5.12805 * 15 13 3 18 18 H 1.09000 * 109.47046 * 357.72546 * 17 15 13 19 19 C 1.52998 * 109.47035 * 237.72060 * 17 15 13 20 20 C 1.53002 * 109.47016 * 117.71978 * 17 15 13 21 21 N 1.46492 * 109.47289 * 305.00256 * 20 17 15 22 22 C 1.36940 * 120.00125 * 179.97438 * 21 20 17 23 23 H 1.08003 * 119.99907 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00202 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00282 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00217 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46857 * 60.00200 * 26 24 22 28 28 H 1.48498 * 109.47253 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46987 * 300.00510 * 26 24 22 30 30 H 1.08995 * 109.46708 * 59.99891 * 1 2 3 31 31 H 1.08994 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46715 * 300.00541 * 1 2 3 33 33 H 1.09002 * 109.46715 * 239.99459 * 2 1 3 34 34 H 1.09000 * 109.46971 * 119.99734 * 2 1 3 35 35 H 1.08001 * 120.01327 * 359.96842 * 7 6 5 36 36 H 1.07993 * 119.94621 * 180.27235 * 8 7 6 37 37 H 1.07995 * 119.94213 * 179.74604 * 9 8 7 38 38 H 1.08010 * 119.98490 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47006 * 85.04031 * 16 15 13 40 40 H 1.08999 * 109.47032 * 325.03988 * 16 15 13 41 41 H 1.08996 * 109.46799 * 205.03816 * 16 15 13 42 42 H 1.09000 * 109.47600 * 300.00146 * 19 17 15 43 43 H 1.09003 * 109.47064 * 60.00315 * 19 17 15 44 44 H 1.08998 * 109.46747 * 179.97438 * 19 17 15 45 45 H 1.09004 * 109.46538 * 65.00014 * 20 17 15 46 46 H 1.09003 * 109.46706 * 184.99573 * 20 17 15 47 47 H 0.97002 * 120.00338 * 359.97438 * 21 20 17 48 48 H 0.96992 * 120.00514 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5933 1.9858 -0.8326 5 8 1.6799 2.0751 1.2297 6 6 0.5612 2.8476 1.2218 7 6 -0.1711 2.9978 0.0539 8 6 -1.3111 3.7788 0.0496 9 6 -1.7165 4.4200 1.2054 10 6 -0.9862 4.2776 2.3706 11 6 0.1524 3.4920 2.3825 12 9 0.8660 3.3522 3.5211 13 6 3.5400 1.4449 -0.1457 14 8 4.2402 1.7539 0.7952 15 7 4.1035 1.1038 -1.3217 16 6 5.5604 0.9970 -1.4322 17 6 3.2589 0.8399 -2.4893 18 1 2.2100 0.9283 -2.2064 19 6 3.5305 -0.5744 -3.0059 20 6 3.5778 1.8546 -3.5891 21 7 3.4326 3.2122 -3.0581 22 6 3.6689 4.2923 -3.8659 23 1 3.9620 4.1434 -4.8947 24 6 3.5309 5.5787 -3.3629 25 7 3.1733 5.7603 -2.1093 26 14 3.8540 7.0521 -4.4647 27 1 2.9243 7.0179 -5.6222 28 1 3.6396 8.3031 -3.6938 29 1 5.2554 7.0066 -4.9539 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.1471 2.5014 -0.8509 36 1 -1.8836 3.8919 -0.8591 37 1 -2.6056 5.0331 1.1982 38 1 -1.3048 4.7799 3.2722 39 1 5.8772 0.0043 -1.1124 40 1 6.0289 1.7497 -0.7982 41 1 5.8588 1.1576 -2.4681 42 1 4.5795 -0.6628 -3.2887 43 1 3.3033 -1.2973 -2.2223 44 1 2.9018 -0.7709 -3.8743 45 1 4.6012 1.7069 -3.9341 46 1 2.8896 1.7149 -4.4228 47 1 3.1691 3.3460 -2.1342 48 1 3.0772 6.6591 -1.7577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496206359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:13 Heat of formation + Delta-G solvation = -88.282791 kcal Electronic energy + Delta-G solvation = -31568.332834 eV Core-core repulsion = 27345.393520 eV Total energy + Delta-G solvation = -4222.939314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84408 -42.03949 -40.57258 -38.55371 -38.07757 -35.84201 -34.75980 -33.24770 -31.69658 -31.60850 -31.03197 -29.65600 -27.41369 -26.97671 -24.59104 -24.38653 -23.51055 -23.11902 -22.25726 -20.33681 -19.84066 -19.18654 -18.34285 -18.06320 -17.55986 -17.24905 -17.00741 -16.58162 -16.54403 -16.15508 -15.91197 -15.52533 -15.48659 -15.29397 -15.10727 -14.83422 -14.27237 -14.14583 -13.90420 -13.80198 -13.64232 -13.43172 -13.31475 -13.27940 -13.08440 -12.95500 -12.77531 -12.73400 -12.67413 -12.49523 -12.34251 -12.19141 -12.06724 -11.83718 -11.76812 -11.59827 -10.94474 -10.81589 -9.90323 -9.72507 -9.20455 -8.99659 -7.93168 -5.22905 0.13955 0.26981 1.34924 1.45137 1.47816 1.53968 1.54749 2.30998 2.55270 2.60989 3.19115 3.24697 3.40928 3.49111 3.66056 3.72669 3.80259 3.92991 4.04188 4.12739 4.16967 4.27242 4.30018 4.34803 4.42161 4.42647 4.52286 4.63502 4.67704 4.81617 4.88674 4.91943 4.93466 4.98742 5.00636 5.04982 5.08913 5.11291 5.24908 5.27956 5.35170 5.43196 5.47790 5.54460 5.69202 6.16206 6.25162 6.30520 7.02263 7.32849 8.08821 8.29156 9.28452 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.005311 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.966855 B = 5270.940034 C = 7166.132491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.067 3.933 4 H 0.106 0.894 5 O -0.308 6.308 6 C 0.080 3.920 7 C -0.183 4.183 8 C -0.083 4.083 9 C -0.123 4.123 10 C -0.115 4.115 11 C 0.028 3.972 12 F -0.153 7.153 13 C 0.508 3.492 14 O -0.576 6.576 15 N -0.588 5.588 16 C 0.092 3.908 17 C 0.117 3.883 18 H 0.097 0.903 19 C -0.151 4.151 20 C 0.134 3.866 21 N -0.743 5.743 22 C -0.241 4.241 23 H 0.080 0.920 24 C -0.073 4.073 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.272 1.272 28 H -0.303 1.303 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.029 0.971 46 H 0.051 0.949 47 H 0.368 0.632 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -14.422 0.169 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.007 3.993 4 H 0.123 0.877 5 O -0.221 6.221 6 C 0.034 3.966 7 C -0.202 4.202 8 C -0.101 4.101 9 C -0.141 4.141 10 C -0.133 4.133 11 C 0.009 3.991 12 F -0.132 7.132 13 C 0.296 3.704 14 O -0.456 6.456 15 N -0.321 5.321 16 C -0.050 4.050 17 C 0.014 3.986 18 H 0.115 0.885 19 C -0.209 4.209 20 C 0.007 3.993 21 N -0.385 5.385 22 C -0.373 4.373 23 H 0.098 0.902 24 C -0.266 4.266 25 N -0.615 5.615 26 Si 0.798 3.202 27 H -0.198 1.198 28 H -0.229 1.229 29 H -0.209 1.209 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.199 0.801 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.586 -14.251 0.675 17.765 hybrid contribution 0.912 1.478 0.237 1.753 sum -9.673 -12.774 0.912 16.049 Atomic orbital electron populations 1.21892 0.92703 1.03941 1.02237 1.22090 0.98791 0.91090 1.04925 1.22585 0.91953 0.97446 0.87268 0.87715 1.86176 1.41010 1.60685 1.34213 1.19357 0.88232 0.94150 0.94863 1.21391 0.97999 1.04604 0.96178 1.21430 0.94830 0.93902 0.99964 1.21366 1.01363 1.00429 0.90920 1.21346 0.92418 0.97576 1.01965 1.17522 0.95782 1.04932 0.80895 1.91430 1.78168 1.95001 1.48571 1.20712 0.90411 0.76369 0.82928 1.90667 1.64999 1.48828 1.41081 1.47757 1.07939 1.67345 1.09023 1.21583 0.78903 1.01583 1.02910 1.21862 0.94876 0.97047 0.84774 0.88533 1.22104 1.03947 0.92147 1.02725 1.21341 0.99120 0.83710 0.95132 1.42484 1.83212 1.01051 1.11785 1.19552 1.37353 0.86062 0.94323 0.90187 1.25526 1.03404 1.00244 0.97412 1.69839 1.55790 1.20786 1.15123 0.85295 0.78084 0.78903 0.77952 1.19760 1.22928 1.20853 0.91006 0.89236 0.93891 0.86952 0.90959 0.83933 0.82207 0.81060 0.81755 0.90286 0.94365 0.89486 0.91224 0.90554 0.88577 0.95290 0.93124 0.80052 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.53 71.98 0.61 -2.27 16 2 C -0.13 -3.09 5.23 30.60 0.16 -2.93 16 3 C 0.07 2.27 1.68 29.85 0.05 2.32 16 4 H 0.11 3.56 4.11 -2.39 -0.01 3.55 16 5 O -0.31 -12.50 9.05 -74.31 -0.67 -13.17 16 6 C 0.08 2.90 5.49 22.53 0.12 3.02 16 7 C -0.18 -5.56 7.42 22.36 0.17 -5.39 16 8 C -0.08 -2.02 10.04 22.26 0.22 -1.80 16 9 C -0.12 -2.67 10.04 22.28 0.22 -2.44 16 10 C -0.11 -2.97 10.02 22.30 0.22 -2.75 16 11 C 0.03 0.99 7.31 22.45 0.16 1.15 16 12 F -0.15 -5.94 17.11 44.97 0.77 -5.17 16 13 C 0.51 20.36 6.56 87.65 0.58 20.93 16 14 O -0.58 -28.89 16.17 15.75 0.25 -28.63 16 15 N -0.59 -19.38 2.28 -822.60 -1.87 -21.25 16 16 C 0.09 2.88 9.37 127.77 1.20 4.07 16 17 C 0.12 3.08 1.87 44.99 0.08 3.17 16 18 H 0.10 2.39 4.73 -2.39 -0.01 2.38 16 19 C -0.15 -2.46 8.92 71.98 0.64 -1.82 16 20 C 0.13 4.55 5.57 86.38 0.48 5.03 16 21 N -0.74 -35.54 5.43 -343.46 -1.87 -37.40 16 22 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 25 N -0.96 -60.03 13.06 21.65 0.28 -59.74 16 26 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 29 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 30 H 0.07 1.22 7.00 -2.39 -0.02 1.20 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.99 6.49 -2.39 -0.02 0.98 16 33 H 0.11 2.03 5.27 -2.39 -0.01 2.01 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.14 4.09 4.59 -2.91 -0.01 4.07 16 36 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.46 7.51 -2.39 -0.02 1.44 16 41 H 0.09 2.46 6.62 -2.39 -0.02 2.45 16 42 H 0.07 1.11 7.59 -2.39 -0.02 1.09 16 43 H 0.08 1.04 7.22 -2.39 -0.02 1.02 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.03 0.99 6.95 -2.39 -0.02 0.97 16 46 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.37 19.55 6.94 -92.71 -0.64 18.90 16 48 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -81.64 383.53 5.51 -76.13 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.35 Total: 36.69 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.23 Total: 4.48 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -3.46 Total: -118.40 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.42 Total: -41.81 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.77 Total: -5.17 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -81.64 5.51 -76.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496206359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.155 kcal (2) G-P(sol) polarization free energy of solvation -81.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds