Wall clock time and date at job start Tue Mar 31 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.53004 * 109.46899 * 119.99370 * 2 1 3 5 5 C 1.52995 * 109.47195 * 295.00005 * 4 2 1 6 6 C 1.50703 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.38220 * 120.01132 * 99.99989 * 6 5 4 8 8 C 1.38224 * 120.02729 * 179.97438 * 7 6 5 9 9 C 1.38269 * 120.04868 * 0.02772 * 8 7 6 10 10 C 1.38177 * 120.02669 * 359.97438 * 9 8 7 11 11 C 1.38434 * 120.01448 * 279.72884 * 6 5 4 12 12 F 1.35104 * 120.02499 * 359.97438 * 11 6 5 13 13 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 14 14 O 1.21283 * 119.99803 * 239.99993 * 13 2 1 15 15 N 1.34777 * 119.99675 * 60.27868 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.08993 * 109.47209 * 59.99808 * 17 16 15 19 19 O 1.42902 * 109.47445 * 299.99981 * 17 16 15 20 20 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 21 21 N 1.46500 * 109.47207 * 185.00094 * 20 17 16 22 22 C 1.36944 * 119.99915 * 179.97438 * 21 20 17 23 23 H 1.07992 * 120.00257 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99728 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00032 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99769 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47384 * 90.00103 * 26 24 22 28 28 H 1.48505 * 109.47085 * 210.00122 * 26 24 22 29 29 H 1.48501 * 109.47245 * 329.99655 * 26 24 22 30 30 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 31 31 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 32 32 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46993 * 55.00275 * 4 2 1 34 34 H 1.09000 * 109.47217 * 175.00141 * 4 2 1 35 35 H 1.08992 * 109.47370 * 300.00039 * 5 4 2 36 36 H 1.09000 * 109.46927 * 59.99958 * 5 4 2 37 37 H 1.08001 * 119.98679 * 359.95778 * 7 6 5 38 38 H 1.07998 * 119.97725 * 180.02562 * 8 7 6 39 39 H 1.07999 * 119.98504 * 179.97438 * 9 8 7 40 40 H 1.08004 * 120.01303 * 179.97438 * 10 9 8 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 0.96703 * 114.00038 * 300.00192 * 19 17 16 45 45 H 1.09002 * 109.47390 * 305.00007 * 20 17 16 46 46 H 1.09005 * 109.47466 * 65.00400 * 20 17 16 47 47 H 0.96998 * 120.00088 * 359.97438 * 21 20 17 48 48 H 0.96998 * 119.99254 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 0.0691 2.4953 6 6 2.1369 -0.6415 3.7259 7 6 3.2917 -0.2099 4.3509 8 6 3.7519 -0.8611 5.4800 9 6 3.0581 -1.9452 5.9851 10 6 1.9034 -2.3785 5.3619 11 6 1.4384 -1.7233 4.2341 12 9 0.3062 -2.1423 3.6274 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1189 15 7 1.7114 -0.2468 -2.4545 16 6 2.2048 -0.9340 -3.6505 17 6 1.6990 -0.2100 -4.8998 18 1 2.0614 0.8179 -4.8959 19 8 0.2700 -0.2111 -4.9053 20 6 2.2137 -0.9280 -6.1490 21 7 1.8301 -0.1687 -7.3417 22 6 2.1842 -0.6212 -8.5847 23 1 2.7459 -1.5380 -8.6858 24 6 1.8202 0.0980 -9.7148 25 7 1.1343 1.2146 -9.5917 26 14 2.3027 -0.5196 -11.4105 27 1 1.2351 -1.4079 -11.9360 28 1 2.4805 0.6360 -12.3261 29 1 3.5762 -1.2777 -11.3173 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7196 1.2953 34 1 3.1262 -0.7994 1.2058 35 1 2.0697 1.0676 2.4494 36 1 0.5488 0.1474 2.5389 37 1 3.8348 0.6363 3.9568 38 1 4.6541 -0.5230 5.9679 39 1 3.4188 -2.4536 6.8671 40 1 1.3619 -3.2256 5.7565 41 1 1.1537 0.5418 -2.5435 42 1 3.2948 -0.9335 -3.6463 43 1 1.8419 -1.9618 -3.6548 44 1 -0.1227 -1.0948 -4.9090 45 1 3.2999 -1.0059 -6.1017 46 1 1.7796 -1.9267 -6.1989 47 1 1.3252 0.6546 -7.2509 48 1 0.8798 1.7169 -10.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497052240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:08 Heat of formation + Delta-G solvation = -143.543023 kcal Electronic energy + Delta-G solvation = -28046.609208 eV Core-core repulsion = 23821.273630 eV Total energy + Delta-G solvation = -4225.335578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87509 -41.09753 -39.98655 -39.01161 -36.68233 -36.08882 -35.30993 -33.40274 -33.12474 -31.43557 -30.63540 -29.14424 -27.21125 -26.16040 -24.63274 -23.69440 -23.25996 -22.77104 -21.87003 -20.73976 -19.24911 -18.59726 -18.26338 -17.65902 -17.41673 -17.21337 -16.86467 -16.52803 -16.47019 -16.26388 -16.24492 -15.48298 -15.30010 -15.09751 -14.94089 -14.72046 -14.49546 -14.20417 -14.12970 -13.91725 -13.74841 -13.64009 -13.33881 -13.19498 -12.96270 -12.76207 -12.70671 -12.57987 -12.42850 -12.16598 -12.09654 -11.97897 -11.81897 -11.66898 -11.61342 -11.12507 -10.98536 -10.70888 -10.12601 -9.87419 -9.56222 -9.02188 -7.95905 -5.25463 0.22023 0.28960 1.47374 1.49042 1.57531 1.63137 2.12728 2.55655 2.67343 3.35121 3.35289 3.46419 3.57853 3.58850 3.71515 3.80432 3.94938 3.99945 4.04723 4.16476 4.20536 4.31603 4.37193 4.42095 4.47922 4.50270 4.55505 4.61387 4.71222 4.73613 4.91051 4.92286 4.95911 5.01429 5.03991 5.14857 5.20125 5.23726 5.32772 5.36410 5.40895 5.47361 5.47538 5.51481 5.99904 6.25268 6.53917 6.77643 7.23702 7.32526 8.07303 8.30864 9.27190 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034874 B = 0.001535 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.689885 B =18235.750317 C =18425.242690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.127 0.873 4 C -0.086 4.086 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.165 4.165 11 C 0.069 3.931 12 F -0.152 7.152 13 C 0.511 3.489 14 O -0.588 6.588 15 N -0.711 5.711 16 C 0.101 3.899 17 C 0.110 3.890 18 H 0.102 0.898 19 O -0.562 6.562 20 C 0.122 3.878 21 N -0.739 5.739 22 C -0.251 4.251 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.967 5.967 26 Si 0.975 3.025 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.270 1.270 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.415 0.585 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.384 0.616 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -1.235 35.456 35.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.145 0.855 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.184 4.184 11 C 0.050 3.950 12 F -0.131 7.131 13 C 0.299 3.701 14 O -0.469 6.469 15 N -0.363 5.363 16 C -0.024 4.024 17 C 0.050 3.950 18 H 0.120 0.880 19 O -0.368 6.368 20 C -0.006 4.006 21 N -0.382 5.382 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.804 3.196 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.195 1.195 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.252 0.748 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.233 0.767 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.370 -1.431 35.378 35.486 hybrid contribution -0.554 -0.657 -1.456 1.691 sum 1.816 -2.088 33.922 34.035 Atomic orbital electron populations 1.21844 0.91595 1.02447 1.04232 1.21343 0.98532 1.01594 0.90733 0.85487 1.21243 1.00846 0.98235 0.92120 1.20631 1.02047 0.99241 0.89421 1.20161 0.97105 0.96477 0.98950 1.21326 0.94300 1.00447 0.95356 1.21615 1.00973 0.95798 0.96349 1.21374 0.93564 0.96592 1.00206 1.21426 0.99327 1.01891 0.95768 1.17982 0.85032 0.97119 0.94897 1.91455 1.49048 1.89638 1.82918 1.21297 0.79137 0.84082 0.85586 1.90686 1.40169 1.28526 1.87500 1.45846 1.53311 1.32412 1.04731 1.21813 0.99818 0.96557 0.84222 1.22078 0.81289 1.00368 0.91288 0.88018 1.86551 1.18630 1.34867 1.96758 1.21412 0.97830 0.94634 0.86678 1.42402 1.66651 1.27906 1.01231 1.19651 1.28112 1.05504 0.85038 0.90651 1.25588 1.01532 0.97824 1.01658 1.69834 1.44839 1.17863 1.29163 0.85127 0.78047 0.76823 0.79653 1.21384 1.22061 1.19454 0.89364 0.90862 0.93563 0.93752 0.92209 0.87947 0.90026 0.83042 0.82801 0.82661 0.84007 0.74763 0.90863 0.91367 0.76676 0.94955 0.95310 0.79102 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.85 71.98 0.64 -1.29 16 2 C -0.10 -1.60 2.72 -11.54 -0.03 -1.63 16 3 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.09 -1.55 4.01 30.59 0.12 -1.43 16 5 C -0.08 -0.99 4.83 29.85 0.14 -0.85 16 6 C -0.13 -1.93 5.14 -19.82 -0.10 -2.03 16 7 C -0.10 -1.11 9.67 22.26 0.22 -0.89 16 8 C -0.13 -1.23 10.04 22.27 0.22 -1.01 16 9 C -0.10 -1.02 10.04 22.26 0.22 -0.80 16 10 C -0.17 -2.37 10.03 22.31 0.22 -2.15 16 11 C 0.07 1.25 7.24 22.38 0.16 1.41 16 12 F -0.15 -3.26 16.66 44.97 0.75 -2.51 16 13 C 0.51 12.19 7.15 87.66 0.63 12.82 16 14 O -0.59 -19.32 15.92 -3.04 -0.05 -19.37 16 15 N -0.71 -15.41 5.34 -463.07 -2.47 -17.88 16 16 C 0.10 2.56 5.34 86.38 0.46 3.03 16 17 C 0.11 3.23 3.09 30.59 0.09 3.33 16 18 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 19 O -0.56 -16.77 13.03 -148.98 -1.94 -18.71 16 20 C 0.12 4.64 5.90 86.38 0.51 5.15 16 21 N -0.74 -37.31 5.55 -343.44 -1.91 -39.22 16 22 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 26 Si 0.97 46.19 29.55 68.60 2.03 48.21 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.09 0.87 6.56 -2.39 -0.02 0.85 16 31 H 0.07 0.86 7.57 -2.38 -0.02 0.85 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 35 H 0.10 0.84 8.00 -2.39 -0.02 0.82 16 36 H 0.08 1.03 6.36 -2.39 -0.02 1.01 16 37 H 0.15 1.05 8.04 -2.91 -0.02 1.03 16 38 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.42 7.41 7.77 -92.71 -0.72 6.69 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.38 9.51 9.05 -74.05 -0.67 8.84 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.38 20.52 7.67 -92.71 -0.71 19.81 16 48 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -75.32 404.40 0.40 -74.92 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -1.11 Total: 37.08 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.82 Total: -3.37 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -4.10 Total: -116.25 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.99 Total: -38.09 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.75 Total: -2.51 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.32 0.40 -74.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497052240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.620 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds