Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46719 * 2 1 4 4 C 1.52993 * 109.46974 * 240.00425 * 2 1 3 5 5 C 1.53001 * 109.47523 * 64.99857 * 4 2 1 6 6 C 1.50696 * 109.47556 * 179.97438 * 5 4 2 7 7 C 1.38221 * 120.01004 * 99.99595 * 6 5 4 8 8 C 1.38229 * 120.02594 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.04920 * 359.97438 * 8 7 6 10 10 C 1.38175 * 120.02891 * 0.02562 * 9 8 7 11 11 C 1.38435 * 120.01469 * 280.00255 * 6 5 4 12 12 F 1.35093 * 120.02480 * 0.02562 * 11 6 5 13 13 C 1.50697 * 109.47057 * 120.00251 * 2 1 3 14 14 O 1.21281 * 119.99960 * 120.00110 * 13 2 1 15 15 N 1.34774 * 119.99937 * 300.00037 * 13 2 1 16 16 C 1.46501 * 119.99820 * 180.02562 * 15 13 2 17 17 C 1.53001 * 109.47201 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47065 * 304.99906 * 17 16 15 19 19 O 1.42905 * 109.46832 * 64.99666 * 17 16 15 20 20 C 1.52998 * 109.47253 * 184.99979 * 17 16 15 21 21 N 1.46500 * 109.47069 * 180.02562 * 20 17 16 22 22 C 1.36936 * 119.99930 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00436 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00044 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00165 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00183 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47552 * 89.99740 * 26 24 22 28 28 H 1.48498 * 109.47446 * 210.00285 * 26 24 22 29 29 H 1.48504 * 109.47031 * 329.99878 * 26 24 22 30 30 H 1.08997 * 109.47184 * 299.99428 * 1 2 3 31 31 H 1.08996 * 109.47403 * 59.99945 * 1 2 3 32 32 H 1.09006 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47398 * 304.99825 * 4 2 1 34 34 H 1.09001 * 109.47279 * 185.00000 * 4 2 1 35 35 H 1.09001 * 109.46810 * 59.99608 * 5 4 2 36 36 H 1.09001 * 109.46960 * 300.00339 * 5 4 2 37 37 H 1.08002 * 119.98827 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.97486 * 180.02562 * 8 7 6 39 39 H 1.07998 * 119.99008 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.01835 * 179.74986 * 10 9 8 41 41 H 0.96998 * 120.00204 * 0.02562 * 15 13 2 42 42 H 1.09006 * 109.47148 * 299.99435 * 16 15 13 43 43 H 1.09001 * 109.47536 * 59.99808 * 16 15 13 44 44 H 0.96702 * 113.99724 * 60.00824 * 19 17 16 45 45 H 1.09004 * 109.46646 * 299.99910 * 20 17 16 46 46 H 1.08990 * 109.47127 * 60.00051 * 20 17 16 47 47 H 0.96996 * 120.00411 * 0.02562 * 21 20 17 48 48 H 0.96994 * 120.00339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6353 0.0691 -2.4953 6 6 2.1381 -0.6409 -3.7258 7 6 1.2790 -1.4280 -4.4694 8 6 1.7400 -2.0798 -5.5978 9 6 3.0606 -1.9449 -5.9843 10 6 3.9213 -1.1586 -5.2426 11 6 3.4606 -0.5052 -4.1118 12 9 4.3013 0.2633 -3.3854 13 6 2.0324 -0.7105 1.2304 14 8 2.7297 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4545 16 6 2.1956 -0.9404 3.6506 17 6 1.6850 -0.2197 4.9000 18 1 1.9725 0.8308 4.8564 19 8 0.2608 -0.3216 4.9600 20 6 2.2954 -0.8643 6.1460 21 7 1.8060 -0.1746 7.3422 22 6 2.2188 -0.5800 8.5833 23 1 2.9055 -1.4079 8.6804 24 6 1.7555 0.0739 9.7168 25 7 0.9190 1.0832 9.5986 26 14 2.3192 -0.4786 11.4098 27 1 3.5492 0.2623 11.7884 28 1 1.2497 -0.2022 12.4023 29 1 2.6067 -1.9353 11.3849 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2953 34 1 3.1264 -0.7994 -1.2056 35 1 2.0699 1.0676 -2.4493 36 1 0.5489 0.1473 -2.5389 37 1 0.2471 -1.5338 -4.1686 38 1 1.0679 -2.6943 -6.1784 39 1 3.4197 -2.4542 -6.8664 40 1 4.9538 -1.0565 -5.5424 41 1 1.1488 0.5384 2.5436 42 1 1.8326 -1.9682 3.6508 43 1 3.2856 -0.9400 3.6505 44 1 -0.0671 -1.2304 5.0009 45 1 2.0078 -1.9149 6.1895 46 1 3.3816 -0.7866 6.1002 47 1 1.1890 0.5687 7.2552 48 1 0.5950 1.5398 10.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497052243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = -119.065116 kcal Electronic energy + Delta-G solvation = -28023.299858 eV Core-core repulsion = 23799.025722 eV Total energy + Delta-G solvation = -4224.274136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.20156 -40.13692 -39.44200 -37.72237 -35.94536 -34.41460 -33.99416 -32.72750 -31.28789 -30.94198 -29.30389 -28.39131 -25.90738 -25.17098 -23.26732 -23.07727 -22.23022 -21.43358 -21.16976 -19.81603 -18.00117 -17.42355 -17.12977 -16.87457 -16.43229 -16.19277 -16.04386 -15.85837 -15.36307 -15.22594 -14.60525 -14.49627 -14.34770 -14.01930 -13.98359 -13.59683 -13.58116 -13.18389 -13.09616 -12.93125 -12.80481 -12.55026 -12.32639 -12.24812 -12.01968 -11.86342 -11.68408 -11.55896 -11.09230 -10.96366 -10.93908 -10.82825 -10.62309 -10.17948 -9.95141 -9.79259 -9.47650 -9.36458 -9.08378 -9.01876 -8.90963 -6.94707 -5.76946 -3.06648 0.74333 0.78333 2.60517 3.07036 3.20406 3.43245 3.48333 3.50083 3.88853 4.15667 4.30008 4.46365 4.50007 4.55053 4.61108 4.70154 4.72226 4.78638 4.87742 4.90031 5.02783 5.11646 5.16736 5.25244 5.27426 5.47103 5.52867 5.53430 5.55149 5.61197 5.64047 5.64285 5.77124 5.82144 5.86695 5.95160 5.96062 6.03365 6.05520 6.19402 6.41210 6.48560 6.50447 6.66790 7.47537 7.67823 7.93100 8.19582 8.41225 9.52968 10.09524 10.45546 11.45346 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.001545 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.415054 B =18121.643638 C =18430.456938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.112 4.112 7 C -0.090 4.090 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.154 4.154 11 C 0.101 3.899 12 F -0.136 7.136 13 C 0.514 3.486 14 O -0.544 6.544 15 N -0.721 5.721 16 C 0.089 3.911 17 C 0.089 3.911 18 H 0.104 0.896 19 O -0.552 6.552 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.404 0.596 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.373 0.627 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -2.837 -34.241 34.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.172 4.172 11 C 0.081 3.919 12 F -0.115 7.115 13 C 0.300 3.700 14 O -0.421 6.421 15 N -0.372 5.372 16 C -0.035 4.035 17 C 0.029 3.971 18 H 0.122 0.878 19 O -0.357 6.357 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.239 0.761 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.220 0.780 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.066 -2.959 -34.148 34.276 hybrid contribution 0.131 -0.156 1.179 1.196 sum 0.065 -3.116 -32.970 33.116 Atomic orbital electron populations 1.21850 0.92723 1.02943 1.02908 1.21314 0.97734 1.00980 0.93129 0.88377 1.21355 1.02237 0.98877 0.90690 1.20659 1.01685 0.98768 0.90870 1.19969 0.92312 1.00475 0.98512 1.20998 0.99691 0.95622 0.94455 1.21226 0.96003 1.00227 0.97294 1.21016 0.93394 0.97698 0.99456 1.21184 1.01341 0.99427 0.95282 1.17610 0.87866 0.94367 0.92023 1.91506 1.70487 1.72901 1.76562 1.20619 0.80058 0.84633 0.84673 1.90703 1.38033 1.26475 1.86904 1.45958 1.53550 1.32327 1.05406 1.22102 1.00177 0.96801 0.84437 1.22381 0.81480 1.00859 0.92331 0.87844 1.86571 1.19967 1.32540 1.96621 1.21194 0.96849 0.95328 0.86870 1.42222 1.55533 1.39152 1.00121 1.19227 1.22114 1.12565 0.83661 0.91215 1.24758 0.99816 0.98372 0.97874 1.69676 1.35813 1.23883 1.28416 0.86178 0.77662 0.77962 0.84294 1.21682 1.21718 1.20761 0.91705 0.91261 0.91964 0.90954 0.90832 0.90468 0.89987 0.84986 0.85343 0.85133 0.84803 0.76070 0.91154 0.90528 0.77956 0.95966 0.95388 0.77653 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.85 37.16 0.33 -0.67 16 2 C -0.11 -0.95 2.72 -91.77 -0.25 -1.20 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.09 -0.85 4.01 -26.73 -0.11 -0.96 16 5 C -0.08 -0.59 4.82 -27.88 -0.13 -0.72 16 6 C -0.11 -0.89 5.14 -104.56 -0.54 -1.43 16 7 C -0.09 -0.58 9.67 -39.59 -0.38 -0.96 16 8 C -0.13 -0.74 10.04 -39.58 -0.40 -1.14 16 9 C -0.10 -0.58 10.04 -39.60 -0.40 -0.98 16 10 C -0.15 -1.13 10.03 -39.51 -0.40 -1.53 16 11 C 0.10 0.91 7.24 -39.42 -0.29 0.62 16 12 F -0.14 -1.43 16.66 2.25 0.04 -1.39 16 13 C 0.51 6.34 7.15 -10.99 -0.08 6.27 16 14 O -0.54 -8.89 15.92 5.56 0.09 -8.80 16 15 N -0.72 -8.30 5.40 -60.29 -0.33 -8.62 16 16 C 0.09 1.18 5.31 -4.04 -0.02 1.16 16 17 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 18 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 19 O -0.55 -8.66 13.03 -35.23 -0.46 -9.12 16 20 C 0.13 2.45 5.92 -4.04 -0.02 2.43 16 21 N -0.73 -18.37 5.49 -59.91 -0.33 -18.70 16 22 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 26 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 31 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.84 7.96 -51.93 -0.41 0.42 16 35 H 0.08 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.08 0.43 6.43 -51.93 -0.33 0.10 16 37 H 0.13 0.59 8.04 -52.49 -0.42 0.17 16 38 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.40 3.99 7.89 -40.82 -0.32 3.67 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.37 4.93 9.05 45.56 0.41 5.35 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.39 10.53 7.54 -40.82 -0.31 10.23 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -34.69 404.39 -8.94 -43.63 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.73 Total: 12.35 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.01 Total: -5.31 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.07 Total: -54.94 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.37 Total: -17.92 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.69 -8.94 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497052243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.436 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds