Wall clock time and date at job start Tue Mar 31 2020 22:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46719 * 2 1 4 4 C 1.52993 * 109.46974 * 240.00425 * 2 1 3 5 5 C 1.53001 * 109.47523 * 64.99857 * 4 2 1 6 6 C 1.50696 * 109.47556 * 179.97438 * 5 4 2 7 7 C 1.38221 * 120.01004 * 99.99595 * 6 5 4 8 8 C 1.38229 * 120.02594 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.04920 * 359.97438 * 8 7 6 10 10 C 1.38175 * 120.02891 * 0.02562 * 9 8 7 11 11 C 1.38435 * 120.01469 * 280.00255 * 6 5 4 12 12 F 1.35093 * 120.02480 * 0.02562 * 11 6 5 13 13 C 1.50697 * 109.47057 * 120.00251 * 2 1 3 14 14 O 1.21281 * 119.99960 * 120.00110 * 13 2 1 15 15 N 1.34774 * 119.99937 * 300.00037 * 13 2 1 16 16 C 1.46501 * 119.99820 * 180.02562 * 15 13 2 17 17 C 1.53001 * 109.47201 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47065 * 304.99906 * 17 16 15 19 19 O 1.42905 * 109.46832 * 64.99666 * 17 16 15 20 20 C 1.52998 * 109.47253 * 184.99979 * 17 16 15 21 21 N 1.46500 * 109.47069 * 180.02562 * 20 17 16 22 22 C 1.36936 * 119.99930 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00436 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00044 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00165 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00183 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47552 * 89.99740 * 26 24 22 28 28 H 1.48498 * 109.47446 * 210.00285 * 26 24 22 29 29 H 1.48504 * 109.47031 * 329.99878 * 26 24 22 30 30 H 1.08997 * 109.47184 * 299.99428 * 1 2 3 31 31 H 1.08996 * 109.47403 * 59.99945 * 1 2 3 32 32 H 1.09006 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47398 * 304.99825 * 4 2 1 34 34 H 1.09001 * 109.47279 * 185.00000 * 4 2 1 35 35 H 1.09001 * 109.46810 * 59.99608 * 5 4 2 36 36 H 1.09001 * 109.46960 * 300.00339 * 5 4 2 37 37 H 1.08002 * 119.98827 * 0.02562 * 7 6 5 38 38 H 1.08000 * 119.97486 * 180.02562 * 8 7 6 39 39 H 1.07998 * 119.99008 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.01835 * 179.74986 * 10 9 8 41 41 H 0.96998 * 120.00204 * 0.02562 * 15 13 2 42 42 H 1.09006 * 109.47148 * 299.99435 * 16 15 13 43 43 H 1.09001 * 109.47536 * 59.99808 * 16 15 13 44 44 H 0.96702 * 113.99724 * 60.00824 * 19 17 16 45 45 H 1.09004 * 109.46646 * 299.99910 * 20 17 16 46 46 H 1.08990 * 109.47127 * 60.00051 * 20 17 16 47 47 H 0.96996 * 120.00411 * 0.02562 * 21 20 17 48 48 H 0.96994 * 120.00339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6353 0.0691 -2.4953 6 6 2.1381 -0.6409 -3.7258 7 6 1.2790 -1.4280 -4.4694 8 6 1.7400 -2.0798 -5.5978 9 6 3.0606 -1.9449 -5.9843 10 6 3.9213 -1.1586 -5.2426 11 6 3.4606 -0.5052 -4.1118 12 9 4.3013 0.2633 -3.3854 13 6 2.0324 -0.7105 1.2304 14 8 2.7297 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4545 16 6 2.1956 -0.9404 3.6506 17 6 1.6850 -0.2197 4.9000 18 1 1.9725 0.8308 4.8564 19 8 0.2608 -0.3216 4.9600 20 6 2.2954 -0.8643 6.1460 21 7 1.8060 -0.1746 7.3422 22 6 2.2188 -0.5800 8.5833 23 1 2.9055 -1.4079 8.6804 24 6 1.7555 0.0739 9.7168 25 7 0.9190 1.0832 9.5986 26 14 2.3192 -0.4786 11.4098 27 1 3.5492 0.2623 11.7884 28 1 1.2497 -0.2022 12.4023 29 1 2.6067 -1.9353 11.3849 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2953 34 1 3.1264 -0.7994 -1.2056 35 1 2.0699 1.0676 -2.4493 36 1 0.5489 0.1473 -2.5389 37 1 0.2471 -1.5338 -4.1686 38 1 1.0679 -2.6943 -6.1784 39 1 3.4197 -2.4542 -6.8664 40 1 4.9538 -1.0565 -5.5424 41 1 1.1488 0.5384 2.5436 42 1 1.8326 -1.9682 3.6508 43 1 3.2856 -0.9400 3.6505 44 1 -0.0671 -1.2304 5.0009 45 1 2.0078 -1.9149 6.1895 46 1 3.3816 -0.7866 6.1002 47 1 1.1890 0.5687 7.2552 48 1 0.5950 1.5398 10.3906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497052243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:16 Heat of formation + Delta-G solvation = -143.607035 kcal Electronic energy + Delta-G solvation = -28024.364075 eV Core-core repulsion = 23799.025722 eV Total energy + Delta-G solvation = -4225.338354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.88934 -41.10102 -39.98840 -39.01281 -36.68389 -36.07509 -35.32964 -33.39393 -33.11485 -31.44193 -30.63921 -29.13758 -27.20726 -26.13729 -24.64025 -23.70975 -23.24440 -22.77413 -21.87305 -20.74211 -19.25071 -18.62012 -18.24598 -17.66524 -17.42826 -17.22864 -16.85324 -16.55106 -16.46651 -16.25522 -16.22028 -15.49278 -15.27707 -15.10511 -14.93769 -14.72659 -14.53775 -14.25312 -14.13120 -13.89597 -13.73066 -13.56786 -13.34883 -13.17994 -12.95677 -12.76638 -12.75191 -12.60908 -12.31643 -12.17021 -12.12421 -11.97407 -11.81718 -11.70185 -11.58767 -11.13008 -10.98457 -10.69711 -10.13303 -9.87598 -9.56725 -9.02085 -7.95710 -5.25317 0.21856 0.28979 1.47309 1.48959 1.57448 1.62797 2.12565 2.55598 2.67330 3.35177 3.35370 3.45039 3.57943 3.59300 3.70391 3.80629 3.96586 4.02087 4.02640 4.16672 4.19622 4.33772 4.36530 4.42147 4.46757 4.51004 4.55916 4.60747 4.70596 4.74073 4.91633 4.96234 4.97567 4.98228 5.06462 5.14522 5.19516 5.28063 5.29479 5.37633 5.40809 5.47412 5.47802 5.51982 5.99907 6.25332 6.53003 6.78207 7.23028 7.32753 8.07699 8.31541 9.27330 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.001545 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.415054 B =18121.643638 C =18430.456938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.116 0.884 4 C -0.086 4.086 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.129 4.129 9 C -0.099 4.099 10 C -0.166 4.166 11 C 0.067 3.933 12 F -0.154 7.154 13 C 0.510 3.490 14 O -0.589 6.589 15 N -0.711 5.711 16 C 0.101 3.899 17 C 0.110 3.890 18 H 0.102 0.898 19 O -0.561 6.561 20 C 0.121 3.879 21 N -0.738 5.738 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.975 3.025 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.270 1.270 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.415 0.585 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.385 0.615 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -3.371 -35.734 35.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.134 0.866 4 C -0.124 4.124 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.147 4.147 9 C -0.117 4.117 10 C -0.185 4.185 11 C 0.048 3.952 12 F -0.132 7.132 13 C 0.298 3.702 14 O -0.469 6.469 15 N -0.363 5.363 16 C -0.024 4.024 17 C 0.050 3.950 18 H 0.120 0.880 19 O -0.367 6.367 20 C -0.006 4.006 21 N -0.382 5.382 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.803 3.197 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.195 1.195 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.233 0.767 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.210 0.790 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.076 -3.507 -35.670 35.858 hybrid contribution 0.466 -0.065 1.540 1.610 sum -0.609 -3.573 -34.130 34.322 Atomic orbital electron populations 1.21859 0.90696 1.02992 1.04418 1.21344 0.99203 1.01100 0.90730 0.86576 1.21239 1.00160 0.98901 0.92121 1.20625 1.03072 0.98098 0.89461 1.20167 0.92187 1.01207 0.99144 1.21332 1.00528 0.94968 0.94424 1.21624 0.96301 0.99707 0.97035 1.21374 0.93442 0.97031 0.99871 1.21424 1.02209 0.99680 0.95156 1.18022 0.88531 0.95608 0.93069 1.91450 1.71091 1.73566 1.77134 1.21315 0.79124 0.84099 0.85616 1.90685 1.40091 1.28619 1.87509 1.45864 1.53311 1.32395 1.04772 1.21827 0.99734 0.96612 0.84205 1.22070 0.81206 1.00473 0.91273 0.88039 1.86551 1.19901 1.33732 1.96551 1.21400 0.97082 0.95443 0.86692 1.42385 1.55416 1.39249 1.01114 1.19649 1.21442 1.12194 0.85030 0.90678 1.25585 1.00510 0.98865 1.01628 1.69830 1.37462 1.25331 1.29045 0.85129 0.76902 0.78044 0.79582 1.21369 1.22067 1.19476 0.91173 0.88804 0.92631 0.92036 0.93926 0.90597 0.87506 0.82816 0.82681 0.82658 0.84116 0.74812 0.91159 0.91082 0.76665 0.95260 0.95065 0.79009 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.85 71.99 0.64 -0.94 16 2 C -0.10 -1.64 2.72 -11.54 -0.03 -1.68 16 3 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.09 -1.56 4.01 30.59 0.12 -1.43 16 5 C -0.08 -0.99 4.82 29.85 0.14 -0.84 16 6 C -0.13 -1.94 5.14 -19.82 -0.10 -2.04 16 7 C -0.09 -1.04 9.67 22.26 0.22 -0.83 16 8 C -0.13 -1.18 10.04 22.27 0.22 -0.95 16 9 C -0.10 -1.02 10.04 22.26 0.22 -0.79 16 10 C -0.17 -2.43 10.03 22.31 0.22 -2.21 16 11 C 0.07 1.24 7.24 22.38 0.16 1.40 16 12 F -0.15 -3.45 16.66 44.97 0.75 -2.70 16 13 C 0.51 12.34 7.15 87.66 0.63 12.97 16 14 O -0.59 -19.55 15.92 -3.03 -0.05 -19.60 16 15 N -0.71 -15.60 5.40 -463.05 -2.50 -18.10 16 16 C 0.10 2.59 5.31 86.38 0.46 3.05 16 17 C 0.11 3.25 3.09 30.59 0.09 3.34 16 18 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 19 O -0.56 -16.93 13.03 -148.98 -1.94 -18.87 16 20 C 0.12 4.64 5.92 86.38 0.51 5.15 16 21 N -0.74 -37.36 5.49 -343.46 -1.89 -39.24 16 22 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 25 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 26 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 30 H 0.07 0.73 7.56 -2.39 -0.02 0.71 16 31 H 0.09 0.61 6.56 -2.39 -0.02 0.59 16 32 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.03 7.96 -2.39 -0.02 1.01 16 35 H 0.08 1.01 7.95 -2.39 -0.02 0.99 16 36 H 0.11 0.83 6.43 -2.39 -0.02 0.81 16 37 H 0.15 0.93 8.04 -2.91 -0.02 0.91 16 38 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 40 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.41 7.45 7.89 -92.71 -0.73 6.72 16 42 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.38 9.65 9.05 -74.06 -0.67 8.99 16 45 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.38 20.60 7.54 -92.71 -0.70 19.90 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -75.87 404.39 0.39 -75.47 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -1.11 Total: 36.80 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.82 Total: -2.84 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -4.10 Total: -116.53 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.99 Total: -38.47 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.70 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.87 0.39 -75.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497052243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.133 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds