Wall clock time and date at job start Tue Mar 31 2020 20:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 H 1.08997 * 109.47136 * 303.15553 * 3 2 1 5 5 O 1.42901 * 109.46793 * 63.15920 * 3 2 1 6 6 C 1.35956 * 116.99871 * 259.82336 * 5 3 2 7 7 C 1.38661 * 120.06132 * 5.61518 * 6 5 3 8 8 C 1.38182 * 119.96470 * 179.71658 * 7 6 5 9 9 C 1.38258 * 120.09727 * 0.55757 * 8 7 6 10 10 C 1.38254 * 120.12529 * 359.71954 * 9 8 7 11 11 C 1.38331 * 120.03017 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.04715 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46844 * 183.15789 * 3 2 1 14 14 O 1.21286 * 119.99819 * 254.28838 * 13 3 2 15 15 N 1.34775 * 120.00007 * 74.28943 * 13 3 2 16 16 C 1.46497 * 119.99907 * 5.13238 * 15 13 3 17 17 C 1.52998 * 109.47213 * 94.09649 * 16 15 13 18 18 C 1.46504 * 120.00068 * 185.12747 * 15 13 3 19 19 C 1.53004 * 109.46595 * 90.00251 * 18 15 13 20 20 N 1.46504 * 109.46595 * 180.02562 * 19 18 15 21 21 C 1.36939 * 119.99656 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00335 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00006 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00120 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47101 * 60.00263 * 25 23 21 27 27 H 1.48506 * 109.47060 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47298 * 300.00186 * 25 23 21 29 29 H 1.09003 * 109.46649 * 59.99896 * 1 2 3 30 30 H 1.08994 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47055 * 300.00339 * 1 2 3 32 32 H 1.09003 * 109.47404 * 240.00165 * 2 1 3 33 33 H 1.09001 * 109.47036 * 119.99743 * 2 1 3 34 34 H 1.08002 * 120.01459 * 359.97121 * 7 6 5 35 35 H 1.08006 * 119.95159 * 180.27043 * 8 7 6 36 36 H 1.08001 * 119.93898 * 179.74104 * 9 8 7 37 37 H 1.07999 * 119.98127 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.47276 * 214.09119 * 16 15 13 39 39 H 1.08996 * 109.47424 * 334.09699 * 16 15 13 40 40 H 1.09000 * 109.47575 * 59.99557 * 17 16 15 41 41 H 1.08996 * 109.47274 * 179.97438 * 17 16 15 42 42 H 1.09003 * 109.47474 * 299.99889 * 17 16 15 43 43 H 1.08992 * 109.47333 * 210.00284 * 18 15 13 44 44 H 1.08998 * 109.46956 * 330.00801 * 18 15 13 45 45 H 1.09000 * 109.47050 * 299.99930 * 19 18 15 46 46 H 1.08991 * 109.47048 * 60.00184 * 19 18 15 47 47 H 0.97001 * 120.00198 * 0.02562 * 20 19 18 48 48 H 0.97001 * 120.00237 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6312 1.9724 -0.8603 5 8 1.6252 2.0944 1.2022 6 6 0.5407 2.9100 1.1194 7 6 -0.1800 2.9896 -0.0626 8 6 -1.2854 3.8148 -0.1427 9 6 -1.6674 4.5702 0.9505 10 6 -0.9484 4.4981 2.1291 11 6 0.1560 3.6698 2.2168 12 9 0.8586 3.5988 3.3685 13 6 3.5450 1.4432 -0.0783 14 8 4.2032 1.7093 0.9051 15 7 4.1594 1.1482 -1.2409 16 6 3.3673 0.9372 -2.4551 17 6 3.2730 2.2490 -3.2369 18 6 5.6195 1.0385 -1.2906 19 6 6.0324 -0.4061 -1.0014 20 7 7.4926 -0.5157 -1.0505 21 6 8.0966 -1.7230 -0.8210 22 1 7.4967 -2.5945 -0.6044 23 6 9.4800 -1.8270 -0.8681 24 7 10.2112 -0.7651 -1.1326 25 14 10.3040 -3.4741 -0.5558 26 1 9.8357 -4.4606 -1.5623 27 1 11.7770 -3.3188 -0.6623 28 1 9.9543 -3.9524 0.8059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.1202 2.4038 -0.9189 35 1 -1.8491 3.8734 -1.0621 36 1 -2.5294 5.2174 0.8837 37 1 -1.2486 5.0895 2.9815 38 1 3.8465 0.1789 -3.0744 39 1 2.3660 0.6041 -2.1824 40 1 4.2743 2.5823 -3.5096 41 1 2.6841 2.0920 -4.1404 42 1 2.7939 3.0075 -2.6177 43 1 5.9720 1.3257 -2.2812 44 1 6.0591 1.6986 -0.5429 45 1 5.6800 -0.6933 -0.0107 46 1 5.5928 -1.0662 -1.7490 47 1 8.0314 0.2671 -1.2447 48 1 11.1779 -0.8378 -1.1658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497484371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:39 Heat of formation + Delta-G solvation = -70.109110 kcal Electronic energy + Delta-G solvation = -29956.588664 eV Core-core repulsion = 25734.437419 eV Total energy + Delta-G solvation = -4222.151244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.93830 -41.10309 -39.59887 -37.76473 -36.25171 -34.78667 -33.88034 -31.77660 -31.08754 -30.40478 -30.32281 -28.61898 -26.83531 -23.99974 -23.62686 -23.62144 -22.82987 -21.92889 -21.27698 -19.26181 -19.11256 -17.37404 -17.31977 -17.10640 -16.68422 -16.41767 -15.94616 -15.51536 -15.37120 -15.11329 -14.89557 -14.46455 -14.21023 -14.05896 -13.96105 -13.62327 -13.39271 -13.25177 -13.12458 -12.98062 -12.79862 -12.76288 -12.37471 -12.32461 -12.08095 -11.89556 -11.79238 -11.46610 -11.29933 -11.16255 -10.99225 -10.92079 -10.86562 -10.66457 -10.13874 -9.78031 -9.62866 -9.29771 -8.86283 -8.61377 -8.50256 -6.92970 -5.75044 -3.04588 0.74025 0.87805 2.34452 2.53355 3.19101 3.21218 3.45789 3.50061 3.51391 3.91508 4.13209 4.23601 4.38878 4.44493 4.47054 4.61698 4.65821 4.77411 4.84047 4.87250 4.95912 5.00053 5.11857 5.15894 5.29856 5.44843 5.49918 5.52416 5.55403 5.61883 5.64100 5.66315 5.73488 5.78172 5.78688 5.89533 5.96277 5.98302 6.02038 6.12081 6.25745 6.50546 6.70519 6.86605 6.95669 7.38179 7.70467 8.16702 8.43266 9.54125 10.09881 10.44914 11.47750 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002405 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.302433 B =11639.275267 C =12073.531462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.066 3.934 4 H 0.101 0.899 5 O -0.273 6.273 6 C 0.102 3.898 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.132 4.132 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.129 7.129 13 C 0.511 3.489 14 O -0.506 6.506 15 N -0.603 5.603 16 C 0.092 3.908 17 C -0.173 4.173 18 C 0.108 3.892 19 C 0.143 3.857 20 N -0.730 5.730 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.022 0.978 46 H 0.019 0.981 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.597 10.185 -3.341 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.006 3.994 4 H 0.118 0.882 5 O -0.185 6.185 6 C 0.055 3.945 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.150 4.150 10 C -0.135 4.135 11 C 0.051 3.949 12 F -0.107 7.107 13 C 0.296 3.704 14 O -0.379 6.379 15 N -0.338 5.338 16 C -0.031 4.031 17 C -0.232 4.232 18 C -0.014 4.014 19 C 0.015 3.985 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -29.029 10.105 -2.539 30.842 hybrid contribution 0.793 -0.710 0.025 1.065 sum -28.236 9.395 -2.514 29.864 Atomic orbital electron populations 1.21915 0.94322 1.02803 1.02174 1.22046 0.97286 0.93656 1.04968 1.22518 0.93474 0.95421 0.87985 0.88172 1.86316 1.42321 1.56850 1.32976 1.19135 0.89062 0.92221 0.94066 1.21279 0.98293 1.03982 0.97163 1.21001 0.95716 0.95022 0.98952 1.20931 1.00777 1.00940 0.92396 1.21057 0.93914 0.98589 0.99981 1.17044 0.94897 1.00901 0.82089 1.91540 1.77670 1.95249 1.46266 1.20156 0.88821 0.77907 0.83550 1.90788 1.66174 1.45844 1.35063 1.47837 1.07785 1.70202 1.07956 1.21794 0.96273 0.98403 0.86596 1.22235 1.03161 0.97538 1.00231 1.21741 0.77208 0.99451 1.02983 1.20902 0.86948 0.92615 0.98070 1.42195 0.99417 1.10018 1.85829 1.19148 0.89799 0.87665 1.40416 0.91257 1.24753 0.96169 0.97416 1.02611 1.69652 1.04906 1.27845 1.55777 0.86235 0.78421 0.83254 0.78074 1.21260 1.21631 1.21215 0.92334 0.91537 0.92096 0.89052 0.89546 0.84137 0.84985 0.84850 0.84041 0.89283 0.90308 0.91568 0.91211 0.92778 0.90192 0.89504 0.96034 0.96370 0.78233 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.51 37.16 0.32 -0.82 16 2 C -0.14 -1.36 5.28 -26.73 -0.14 -1.50 16 3 C 0.07 0.77 1.69 -27.88 -0.05 0.72 16 4 H 0.10 0.86 4.29 -51.93 -0.22 0.64 16 5 O -0.27 -3.87 8.96 -39.09 -0.35 -4.22 16 6 C 0.10 1.17 5.62 -39.18 -0.22 0.95 16 7 C -0.19 -1.51 7.45 -39.45 -0.29 -1.81 16 8 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 9 C -0.13 -0.84 10.04 -39.57 -0.40 -1.23 16 10 C -0.12 -0.96 10.02 -39.54 -0.40 -1.36 16 11 C 0.07 0.83 7.31 -39.30 -0.29 0.54 16 12 F -0.13 -1.83 17.11 2.25 0.04 -1.79 16 13 C 0.51 8.01 6.97 -10.99 -0.08 7.93 16 14 O -0.51 -10.61 16.12 -13.94 -0.22 -10.84 16 15 N -0.60 -8.33 2.47 -173.69 -0.43 -8.76 16 16 C 0.09 0.85 5.58 -4.04 -0.02 0.83 16 17 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 18 C 0.11 1.86 5.58 -4.04 -0.02 1.83 16 19 C 0.14 3.02 6.58 -4.04 -0.03 2.99 16 20 N -0.73 -19.15 5.60 -59.91 -0.34 -19.49 16 21 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 25 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.06 0.31 6.71 -51.93 -0.35 -0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 32 H 0.09 0.74 6.26 -51.93 -0.33 0.42 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.14 0.86 4.38 -52.49 -0.23 0.63 16 35 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.08 0.53 4.56 -51.93 -0.24 0.30 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 43 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -36.46 391.74 -8.58 -45.04 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.01 Total: 4.73 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.88 Total: -0.39 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.04 Total: -56.29 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.58 Total: -15.05 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.46 -8.58 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497484371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.064 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds