Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 H 1.08997 * 109.47136 * 303.15553 * 3 2 1 5 5 O 1.42901 * 109.46793 * 63.15920 * 3 2 1 6 6 C 1.35956 * 116.99871 * 259.82336 * 5 3 2 7 7 C 1.38661 * 120.06132 * 5.61518 * 6 5 3 8 8 C 1.38182 * 119.96470 * 179.71658 * 7 6 5 9 9 C 1.38258 * 120.09727 * 0.55757 * 8 7 6 10 10 C 1.38254 * 120.12529 * 359.71954 * 9 8 7 11 11 C 1.38331 * 120.03017 * 0.02562 * 10 9 8 12 12 F 1.35097 * 120.04715 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46844 * 183.15789 * 3 2 1 14 14 O 1.21286 * 119.99819 * 254.28838 * 13 3 2 15 15 N 1.34775 * 120.00007 * 74.28943 * 13 3 2 16 16 C 1.46497 * 119.99907 * 5.13238 * 15 13 3 17 17 C 1.52998 * 109.47213 * 94.09649 * 16 15 13 18 18 C 1.46504 * 120.00068 * 185.12747 * 15 13 3 19 19 C 1.53004 * 109.46595 * 90.00251 * 18 15 13 20 20 N 1.46504 * 109.46595 * 180.02562 * 19 18 15 21 21 C 1.36939 * 119.99656 * 179.97438 * 20 19 18 22 22 H 1.07998 * 120.00335 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00006 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00120 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47101 * 60.00263 * 25 23 21 27 27 H 1.48506 * 109.47060 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47298 * 300.00186 * 25 23 21 29 29 H 1.09003 * 109.46649 * 59.99896 * 1 2 3 30 30 H 1.08994 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47055 * 300.00339 * 1 2 3 32 32 H 1.09003 * 109.47404 * 240.00165 * 2 1 3 33 33 H 1.09001 * 109.47036 * 119.99743 * 2 1 3 34 34 H 1.08002 * 120.01459 * 359.97121 * 7 6 5 35 35 H 1.08006 * 119.95159 * 180.27043 * 8 7 6 36 36 H 1.08001 * 119.93898 * 179.74104 * 9 8 7 37 37 H 1.07999 * 119.98127 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.47276 * 214.09119 * 16 15 13 39 39 H 1.08996 * 109.47424 * 334.09699 * 16 15 13 40 40 H 1.09000 * 109.47575 * 59.99557 * 17 16 15 41 41 H 1.08996 * 109.47274 * 179.97438 * 17 16 15 42 42 H 1.09003 * 109.47474 * 299.99889 * 17 16 15 43 43 H 1.08992 * 109.47333 * 210.00284 * 18 15 13 44 44 H 1.08998 * 109.46956 * 330.00801 * 18 15 13 45 45 H 1.09000 * 109.47050 * 299.99930 * 19 18 15 46 46 H 1.08991 * 109.47048 * 60.00184 * 19 18 15 47 47 H 0.97001 * 120.00198 * 0.02562 * 20 19 18 48 48 H 0.97001 * 120.00237 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6312 1.9724 -0.8603 5 8 1.6252 2.0944 1.2022 6 6 0.5407 2.9100 1.1194 7 6 -0.1800 2.9896 -0.0626 8 6 -1.2854 3.8148 -0.1427 9 6 -1.6674 4.5702 0.9505 10 6 -0.9484 4.4981 2.1291 11 6 0.1560 3.6698 2.2168 12 9 0.8586 3.5988 3.3685 13 6 3.5450 1.4432 -0.0783 14 8 4.2032 1.7093 0.9051 15 7 4.1594 1.1482 -1.2409 16 6 3.3673 0.9372 -2.4551 17 6 3.2730 2.2490 -3.2369 18 6 5.6195 1.0385 -1.2906 19 6 6.0324 -0.4061 -1.0014 20 7 7.4926 -0.5157 -1.0505 21 6 8.0966 -1.7230 -0.8210 22 1 7.4967 -2.5945 -0.6044 23 6 9.4800 -1.8270 -0.8681 24 7 10.2112 -0.7651 -1.1326 25 14 10.3040 -3.4741 -0.5558 26 1 9.8357 -4.4606 -1.5623 27 1 11.7770 -3.3188 -0.6623 28 1 9.9543 -3.9524 0.8059 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.1202 2.4038 -0.9189 35 1 -1.8491 3.8734 -1.0621 36 1 -2.5294 5.2174 0.8837 37 1 -1.2486 5.0895 2.9815 38 1 3.8465 0.1789 -3.0744 39 1 2.3660 0.6041 -2.1824 40 1 4.2743 2.5823 -3.5096 41 1 2.6841 2.0920 -4.1404 42 1 2.7939 3.0075 -2.6177 43 1 5.9720 1.3257 -2.2812 44 1 6.0591 1.6986 -0.5429 45 1 5.6800 -0.6933 -0.0107 46 1 5.5928 -1.0662 -1.7490 47 1 8.0314 0.2671 -1.2447 48 1 11.1779 -0.8378 -1.1658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497484371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = -93.428426 kcal Electronic energy + Delta-G solvation = -29957.599865 eV Core-core repulsion = 25734.437419 eV Total energy + Delta-G solvation = -4223.162446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.85434 -42.04769 -40.58646 -38.53694 -37.59132 -36.51307 -34.83068 -33.53904 -31.69819 -31.62419 -31.01740 -29.89050 -28.09342 -25.67375 -24.53770 -24.39083 -23.53861 -23.41630 -22.29929 -20.40889 -19.92525 -19.19407 -18.32344 -18.12631 -17.56500 -17.34375 -17.08047 -16.72302 -16.41399 -16.15630 -15.90981 -15.54634 -15.50202 -15.24771 -15.03674 -14.96792 -14.78225 -14.50176 -14.20723 -13.87088 -13.73673 -13.47483 -13.16559 -13.08664 -12.98024 -12.90486 -12.81444 -12.66921 -12.61465 -12.43401 -12.33503 -12.19520 -12.18869 -11.90102 -11.82530 -11.59695 -10.99851 -10.86183 -9.92082 -9.85795 -9.23677 -9.09763 -7.99912 -5.31179 0.13051 0.24255 1.33360 1.38503 1.44883 1.48832 1.54961 2.24654 2.54014 2.60924 3.17031 3.24682 3.33243 3.45658 3.61766 3.78511 3.91288 3.92854 4.03322 4.08149 4.12382 4.17554 4.29377 4.32783 4.35720 4.36777 4.49538 4.51632 4.52885 4.69541 4.83199 4.88717 4.92718 4.99654 5.02502 5.05235 5.08212 5.10325 5.26936 5.30323 5.36099 5.39281 5.43251 5.46809 5.68441 6.14956 6.21180 6.30820 6.97695 7.27241 7.98468 8.23731 9.23260 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002405 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.302433 B =11639.275267 C =12073.531462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.075 3.925 4 H 0.137 0.863 5 O -0.313 6.313 6 C 0.073 3.927 7 C -0.185 4.185 8 C -0.076 4.076 9 C -0.123 4.123 10 C -0.118 4.118 11 C 0.023 3.977 12 F -0.159 7.159 13 C 0.500 3.500 14 O -0.575 6.575 15 N -0.595 5.595 16 C 0.082 3.918 17 C -0.170 4.170 18 C 0.122 3.878 19 C 0.150 3.850 20 N -0.743 5.743 21 C -0.252 4.252 22 H 0.074 0.926 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.979 3.021 26 H -0.271 1.271 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.054 0.946 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.054 0.946 45 H -0.005 1.005 46 H 0.038 0.962 47 H 0.375 0.625 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.293 9.912 -6.470 35.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.016 3.984 4 H 0.154 0.846 5 O -0.226 6.226 6 C 0.028 3.972 7 C -0.203 4.203 8 C -0.094 4.094 9 C -0.141 4.141 10 C -0.136 4.136 11 C 0.003 3.997 12 F -0.138 7.138 13 C 0.288 3.712 14 O -0.454 6.454 15 N -0.329 5.329 16 C -0.039 4.039 17 C -0.228 4.228 18 C -0.001 4.001 19 C 0.022 3.978 20 N -0.387 5.387 21 C -0.384 4.384 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.807 3.193 26 H -0.196 1.196 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.072 0.928 45 H 0.013 0.987 46 H 0.056 0.944 47 H 0.207 0.793 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -32.804 9.822 -5.716 34.717 hybrid contribution 1.811 -0.553 0.974 2.129 sum -30.993 9.269 -4.742 32.695 Atomic orbital electron populations 1.21896 0.91982 1.03798 1.02845 1.22088 0.99212 0.92026 1.04393 1.22585 0.90036 0.96990 0.88806 0.84556 1.86265 1.43984 1.57963 1.34410 1.19468 0.89355 0.92823 0.95584 1.21559 0.98275 1.04301 0.96179 1.21524 0.94590 0.93005 1.00253 1.21420 1.00878 1.00520 0.91270 1.21353 0.92869 0.97760 1.01645 1.17699 0.96729 1.03425 0.81800 1.91448 1.78682 1.95705 1.47948 1.21115 0.90812 0.76392 0.82854 1.90749 1.67988 1.49076 1.37544 1.47928 1.06552 1.69031 1.09344 1.22236 0.97087 0.99824 0.84712 1.22224 1.02899 0.96381 1.01276 1.21348 0.79748 0.96161 1.02876 1.20947 0.84330 0.95477 0.97011 1.42389 1.01454 1.09062 1.85747 1.19551 0.90406 0.88648 1.39749 0.90810 1.25650 0.96834 1.01187 1.02952 1.69815 1.04863 1.30009 1.57120 0.85143 0.76944 0.79064 0.78176 1.19641 1.21767 1.20816 0.89176 0.90405 0.93816 0.87042 0.92737 0.81917 0.80904 0.81330 0.82689 0.88557 0.87128 0.93205 0.87899 0.92650 0.88096 0.92755 0.98656 0.94368 0.79291 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.51 71.98 0.61 -1.17 16 2 C -0.14 -2.53 5.28 30.60 0.16 -2.37 16 3 C 0.07 1.71 1.69 29.85 0.05 1.76 16 4 H 0.14 1.95 4.29 -2.39 -0.01 1.94 16 5 O -0.31 -9.35 8.96 -74.42 -0.67 -10.02 16 6 C 0.07 1.69 5.62 22.53 0.13 1.82 16 7 C -0.19 -2.39 7.45 22.36 0.17 -2.22 16 8 C -0.08 -0.58 10.04 22.26 0.22 -0.36 16 9 C -0.12 -1.09 10.04 22.28 0.22 -0.87 16 10 C -0.12 -1.82 10.02 22.30 0.22 -1.60 16 11 C 0.02 0.57 7.31 22.45 0.16 0.73 16 12 F -0.16 -5.05 17.11 44.97 0.77 -4.28 16 13 C 0.50 16.33 6.97 87.66 0.61 16.94 16 14 O -0.58 -26.31 16.12 15.59 0.25 -26.06 16 15 N -0.60 -16.36 2.47 -821.82 -2.03 -18.39 16 16 C 0.08 1.27 5.58 86.38 0.48 1.75 16 17 C -0.17 -2.06 10.24 71.98 0.74 -1.33 16 18 C 0.12 4.33 5.58 86.38 0.48 4.81 16 19 C 0.15 6.49 6.58 86.38 0.57 7.05 16 20 N -0.74 -40.12 5.60 -343.45 -1.92 -42.04 16 21 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 22 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 23 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 24 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 25 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 29 H 0.09 0.51 6.71 -2.39 -0.02 0.49 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.70 6.63 -2.39 -0.02 0.69 16 32 H 0.11 1.51 6.26 -2.39 -0.01 1.49 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.16 1.19 4.38 -2.91 -0.01 1.18 16 35 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.10 1.42 8.10 -2.38 -0.02 1.40 16 39 H 0.11 1.01 4.56 -2.39 -0.01 1.00 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.68 7.94 -2.39 -0.02 0.66 16 43 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 44 H 0.05 2.29 7.36 -2.39 -0.02 2.27 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.38 21.27 7.67 -92.71 -0.71 20.55 16 48 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -87.33 391.74 5.12 -82.21 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.27 Total: 22.67 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.14 Total: 7.13 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -3.67 Total: -121.01 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.42 Total: -36.08 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -87.33 5.12 -82.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497484371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.220 kcal (2) G-P(sol) polarization free energy of solvation -87.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds