Wall clock time and date at job start Tue Mar 31 2020 20:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08999 * 109.47146 * 304.99233 * 3 2 1 5 5 O 1.42897 * 109.47160 * 64.99489 * 3 2 1 6 6 C 1.35953 * 117.00222 * 261.12953 * 5 3 2 7 7 C 1.38660 * 120.06052 * 5.23312 * 6 5 3 8 8 C 1.38186 * 119.96691 * 179.71431 * 7 6 5 9 9 C 1.38257 * 120.09541 * 0.55787 * 8 7 6 10 10 C 1.38255 * 120.12592 * 359.71717 * 9 8 7 11 11 C 1.38329 * 120.03251 * 0.02562 * 10 9 8 12 12 F 1.35090 * 120.05023 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46877 * 184.99667 * 3 2 1 14 14 O 1.21282 * 119.99740 * 244.99447 * 13 3 2 15 15 N 1.34772 * 120.00230 * 65.00182 * 13 3 2 16 16 C 1.46502 * 120.00281 * 180.02562 * 15 13 3 17 17 C 1.52998 * 109.47273 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47242 * 64.99494 * 17 16 15 19 19 C 1.52998 * 109.47094 * 184.99705 * 17 16 15 20 20 N 1.46503 * 109.46832 * 304.99580 * 17 16 15 21 21 C 1.46496 * 120.00346 * 299.99892 * 20 17 16 22 22 C 1.36941 * 119.99696 * 120.00399 * 20 17 16 23 23 H 1.07995 * 119.99912 * 321.70582 * 22 20 17 24 24 C 1.38809 * 120.00215 * 141.71292 * 22 20 17 25 25 N 1.31619 * 120.00228 * 156.11403 * 24 22 20 26 26 Si 1.86801 * 119.99757 * 336.11144 * 24 22 20 27 27 H 1.48501 * 109.47308 * 94.15968 * 26 24 22 28 28 H 1.48497 * 109.47206 * 214.16060 * 26 24 22 29 29 H 1.48507 * 109.47233 * 334.16075 * 26 24 22 30 30 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47729 * 300.00149 * 1 2 3 32 32 H 1.09001 * 109.46561 * 60.00509 * 1 2 3 33 33 H 1.08992 * 109.47580 * 239.99319 * 2 1 3 34 34 H 1.09008 * 109.46915 * 119.99369 * 2 1 3 35 35 H 1.08002 * 120.01456 * 359.96988 * 7 6 5 36 36 H 1.08001 * 119.94913 * 180.26992 * 8 7 6 37 37 H 1.08003 * 119.93551 * 179.74061 * 9 8 7 38 38 H 1.07999 * 119.98575 * 179.97438 * 10 9 8 39 39 H 0.97007 * 120.00066 * 359.97438 * 15 13 3 40 40 H 1.09001 * 109.47030 * 299.99514 * 16 15 13 41 41 H 1.08994 * 109.47111 * 59.99204 * 16 15 13 42 42 H 1.09000 * 109.47057 * 299.99751 * 19 17 16 43 43 H 1.09008 * 109.46962 * 60.00003 * 19 17 16 44 44 H 1.09006 * 109.47233 * 179.97438 * 19 17 16 45 45 H 1.09000 * 109.47247 * 84.61508 * 21 20 17 46 46 H 1.08990 * 109.47421 * 204.61629 * 21 20 17 47 47 H 1.09001 * 109.47060 * 324.61743 * 21 20 17 48 48 H 0.97001 * 119.99775 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6618 2.0814 1.2210 6 6 0.5593 2.8762 1.1860 7 6 -0.2056 2.9526 0.0320 8 6 -1.3291 3.7564 0.0006 9 6 -1.6854 4.4938 1.1145 10 6 -0.9223 4.4250 2.2654 11 6 0.2004 3.6179 2.3044 12 9 0.9460 3.5500 3.4289 13 6 3.5419 1.4443 -0.1238 14 8 4.2249 1.8612 0.7876 15 7 4.1260 0.9828 -1.2472 16 6 5.5861 0.9840 -1.3673 17 6 5.9863 0.4128 -2.7290 18 1 5.6314 1.0745 -3.5192 19 6 7.5101 0.2980 -2.8060 20 7 5.3876 -0.9137 -2.8972 21 6 5.7096 -1.9877 -1.9544 22 6 4.5268 -1.1496 -3.9358 23 1 3.8212 -0.3891 -4.2357 24 6 4.5612 -2.3663 -4.6030 25 7 3.4959 -2.7941 -5.2470 26 14 6.1193 -3.3965 -4.5871 27 1 6.0467 -4.3868 -3.4829 28 1 6.2549 -4.1091 -5.8829 29 1 7.2951 -2.5127 -4.3828 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 0.0743 2.3808 -0.8405 36 1 -1.9271 3.8123 -0.8970 37 1 -2.5617 5.1245 1.0857 38 1 -1.2025 5.0023 3.1341 39 1 3.5797 0.6491 -1.9761 40 1 5.9572 2.0051 -1.2780 41 1 6.0163 0.3706 -0.5756 42 1 7.9556 1.2849 -2.6809 43 1 7.8650 -0.3638 -2.0159 44 1 7.7952 -0.1094 -3.7760 45 1 5.0595 -1.9131 -1.0827 46 1 5.5596 -2.9528 -2.4380 47 1 6.7496 -1.8961 -1.6408 48 1 3.5201 -3.6442 -5.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506039232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:09 Heat of formation + Delta-G solvation = -66.095851 kcal Electronic energy + Delta-G solvation = -30291.636094 eV Core-core repulsion = 26069.658877 eV Total energy + Delta-G solvation = -4221.977216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.83449 -40.76879 -39.21344 -37.64019 -36.83251 -34.18227 -33.54549 -32.10632 -30.93107 -30.28164 -30.12993 -27.89190 -26.26418 -25.41453 -23.60598 -23.24635 -22.66271 -21.78687 -20.02538 -19.45010 -18.86291 -17.46547 -17.09023 -16.99925 -16.42959 -16.11032 -15.75460 -15.70113 -15.30276 -15.03862 -14.77085 -14.57813 -14.15168 -13.99949 -13.84679 -13.31633 -13.22896 -12.95040 -12.77353 -12.54737 -12.41284 -12.32269 -12.26113 -12.13247 -11.94246 -11.87592 -11.60517 -11.56814 -11.32576 -11.07974 -10.92952 -10.67202 -10.55286 -10.22325 -10.06528 -9.74632 -9.53339 -9.14301 -8.70410 -8.60607 -8.34329 -6.95704 -6.14619 -3.56323 0.89142 1.03220 2.59571 2.78143 3.24710 3.35251 3.40430 3.45388 3.65312 4.07720 4.42287 4.46501 4.54145 4.62366 4.69515 4.83970 4.90985 4.98129 4.99501 5.13816 5.16150 5.31870 5.33861 5.39497 5.59969 5.71885 5.74963 5.81735 5.91397 5.93515 5.95794 5.97464 5.98782 6.11316 6.14367 6.16521 6.18658 6.32364 6.42074 6.49034 6.62197 6.66449 6.74195 6.87018 7.12098 7.84755 7.90950 8.20123 8.46412 8.83958 9.56817 9.98837 11.00231 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.002901 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.369544 B = 9649.651935 C =10496.233009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.103 0.897 5 O -0.274 6.274 6 C 0.104 3.896 7 C -0.187 4.187 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.118 4.118 11 C 0.067 3.933 12 F -0.131 7.131 13 C 0.509 3.491 14 O -0.533 6.533 15 N -0.701 5.701 16 C 0.110 3.890 17 C 0.155 3.845 18 H 0.079 0.921 19 C -0.163 4.163 20 N -0.603 5.603 21 C 0.110 3.890 22 C -0.278 4.278 23 H 0.079 0.921 24 C 0.041 3.959 25 N -0.894 5.894 26 Si 0.879 3.121 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.268 1.268 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 11.589 9.435 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.120 0.880 5 O -0.186 6.186 6 C 0.057 3.943 7 C -0.206 4.206 8 C -0.106 4.106 9 C -0.152 4.152 10 C -0.137 4.137 11 C 0.047 3.953 12 F -0.110 7.110 13 C 0.293 3.707 14 O -0.410 6.410 15 N -0.354 5.354 16 C -0.015 4.015 17 C 0.048 3.952 18 H 0.097 0.903 19 C -0.222 4.222 20 N -0.328 5.328 21 C -0.035 4.035 22 C -0.406 4.406 23 H 0.096 0.904 24 C -0.160 4.160 25 N -0.534 5.534 26 Si 0.709 3.291 27 H -0.215 1.215 28 H -0.231 1.231 29 H -0.192 1.192 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.250 0.750 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.237 11.693 10.174 17.553 hybrid contribution 0.743 -1.041 -0.445 1.355 sum -7.493 10.652 9.729 16.256 Atomic orbital electron populations 1.21921 0.94591 1.02812 1.01834 1.22009 0.97235 0.93406 1.05084 1.22491 0.93867 0.95672 0.87360 0.88003 1.86277 1.40832 1.58289 1.33224 1.19123 0.88715 0.92391 0.94024 1.21387 0.97537 1.03863 0.97798 1.21028 0.95806 0.95034 0.98731 1.20916 1.00609 1.01137 0.92558 1.21015 0.93633 0.98880 1.00169 1.17018 0.94048 1.01580 0.82635 1.91516 1.75502 1.95272 1.48693 1.20109 0.88913 0.78658 0.83051 1.90710 1.64743 1.46542 1.38964 1.45805 1.08613 1.63015 1.17985 1.21937 0.79248 1.00265 1.00080 1.20779 0.91998 0.88699 0.93773 0.90315 1.22214 0.97284 1.00509 1.02217 1.44155 1.52566 1.06595 1.29451 1.21296 0.96843 0.92358 0.92954 1.18708 1.10658 1.02114 1.09149 0.90363 1.25493 0.96510 0.97893 0.96144 1.69873 1.27110 1.20740 1.35720 0.86941 0.86418 0.80044 0.75738 1.21506 1.23060 1.19242 0.91595 0.92527 0.92171 0.88360 0.90158 0.83777 0.84937 0.84940 0.84201 0.75043 0.92112 0.92107 0.93289 0.93161 0.92077 0.96735 0.93237 0.95376 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.47 37.16 0.31 -1.35 16 2 C -0.14 -1.79 5.61 -26.73 -0.15 -1.94 16 3 C 0.07 0.91 2.54 -27.88 -0.07 0.84 16 4 H 0.10 1.18 5.44 -51.93 -0.28 0.89 16 5 O -0.27 -4.29 8.99 -39.45 -0.35 -4.64 16 6 C 0.10 1.38 5.64 -39.18 -0.22 1.16 16 7 C -0.19 -1.94 7.33 -39.44 -0.29 -2.23 16 8 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 9 C -0.13 -1.06 10.04 -39.57 -0.40 -1.46 16 10 C -0.12 -1.13 10.02 -39.54 -0.40 -1.52 16 11 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 12 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 13 C 0.51 8.59 7.18 -10.99 -0.08 8.51 16 14 O -0.53 -11.02 16.51 -14.31 -0.24 -11.26 16 15 N -0.70 -11.30 5.29 -60.30 -0.32 -11.62 16 16 C 0.11 1.80 4.97 -4.04 -0.02 1.78 16 17 C 0.16 2.71 2.88 -67.93 -0.20 2.51 16 18 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 19 C -0.16 -2.60 9.16 37.16 0.34 -2.26 16 20 N -0.60 -12.60 1.82 -173.49 -0.32 -12.92 16 21 C 0.11 2.25 8.55 59.84 0.51 2.76 16 22 C -0.28 -6.84 9.53 -15.06 -0.14 -6.98 16 23 H 0.08 2.02 8.06 -52.49 -0.42 1.59 16 24 C 0.04 1.09 5.23 -17.43 -0.09 1.00 16 25 N -0.89 -25.22 13.97 55.49 0.78 -24.44 16 26 Si 0.88 21.02 25.25 -169.99 -4.29 16.72 16 27 H -0.29 -6.79 6.62 56.52 0.37 -6.42 16 28 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 32 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 33 H 0.10 1.31 7.77 -51.93 -0.40 0.91 16 34 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.14 1.33 4.27 -52.49 -0.22 1.10 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.41 6.61 7.59 -40.82 -0.31 6.30 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.79 6.70 -51.92 -0.35 0.45 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.05 1.11 3.74 -51.93 -0.19 0.91 16 47 H 0.03 0.52 6.45 -51.93 -0.34 0.19 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -31.18 384.55 -7.47 -38.65 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.99 Total: 5.35 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.57 Total: 0.28 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.14 Total: -48.98 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.59 Total: -15.90 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.29 Total: 16.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.18 -7.47 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506039232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.448 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds