Wall clock time and date at job start Tue Mar 31 2020 20:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 H 1.08999 * 109.47146 * 304.99233 * 3 2 1 5 5 O 1.42897 * 109.47160 * 64.99489 * 3 2 1 6 6 C 1.35953 * 117.00222 * 261.12953 * 5 3 2 7 7 C 1.38660 * 120.06052 * 5.23312 * 6 5 3 8 8 C 1.38186 * 119.96691 * 179.71431 * 7 6 5 9 9 C 1.38257 * 120.09541 * 0.55787 * 8 7 6 10 10 C 1.38255 * 120.12592 * 359.71717 * 9 8 7 11 11 C 1.38329 * 120.03251 * 0.02562 * 10 9 8 12 12 F 1.35090 * 120.05023 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46877 * 184.99667 * 3 2 1 14 14 O 1.21282 * 119.99740 * 244.99447 * 13 3 2 15 15 N 1.34772 * 120.00230 * 65.00182 * 13 3 2 16 16 C 1.46502 * 120.00281 * 180.02562 * 15 13 3 17 17 C 1.52998 * 109.47273 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47242 * 64.99494 * 17 16 15 19 19 C 1.52998 * 109.47094 * 184.99705 * 17 16 15 20 20 N 1.46503 * 109.46832 * 304.99580 * 17 16 15 21 21 C 1.46496 * 120.00346 * 299.99892 * 20 17 16 22 22 C 1.36941 * 119.99696 * 120.00399 * 20 17 16 23 23 H 1.07995 * 119.99912 * 321.70582 * 22 20 17 24 24 C 1.38809 * 120.00215 * 141.71292 * 22 20 17 25 25 N 1.31619 * 120.00228 * 156.11403 * 24 22 20 26 26 Si 1.86801 * 119.99757 * 336.11144 * 24 22 20 27 27 H 1.48501 * 109.47308 * 94.15968 * 26 24 22 28 28 H 1.48497 * 109.47206 * 214.16060 * 26 24 22 29 29 H 1.48507 * 109.47233 * 334.16075 * 26 24 22 30 30 H 1.09002 * 109.46659 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47729 * 300.00149 * 1 2 3 32 32 H 1.09001 * 109.46561 * 60.00509 * 1 2 3 33 33 H 1.08992 * 109.47580 * 239.99319 * 2 1 3 34 34 H 1.09008 * 109.46915 * 119.99369 * 2 1 3 35 35 H 1.08002 * 120.01456 * 359.96988 * 7 6 5 36 36 H 1.08001 * 119.94913 * 180.26992 * 8 7 6 37 37 H 1.08003 * 119.93551 * 179.74061 * 9 8 7 38 38 H 1.07999 * 119.98575 * 179.97438 * 10 9 8 39 39 H 0.97007 * 120.00066 * 359.97438 * 15 13 3 40 40 H 1.09001 * 109.47030 * 299.99514 * 16 15 13 41 41 H 1.08994 * 109.47111 * 59.99204 * 16 15 13 42 42 H 1.09000 * 109.47057 * 299.99751 * 19 17 16 43 43 H 1.09008 * 109.46962 * 60.00003 * 19 17 16 44 44 H 1.09006 * 109.47233 * 179.97438 * 19 17 16 45 45 H 1.09000 * 109.47247 * 84.61508 * 21 20 17 46 46 H 1.08990 * 109.47421 * 204.61629 * 21 20 17 47 47 H 1.09001 * 109.47060 * 324.61743 * 21 20 17 48 48 H 0.97001 * 119.99775 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6618 2.0814 1.2210 6 6 0.5593 2.8762 1.1860 7 6 -0.2056 2.9526 0.0320 8 6 -1.3291 3.7564 0.0006 9 6 -1.6854 4.4938 1.1145 10 6 -0.9223 4.4250 2.2654 11 6 0.2004 3.6179 2.3044 12 9 0.9460 3.5500 3.4289 13 6 3.5419 1.4443 -0.1238 14 8 4.2249 1.8612 0.7876 15 7 4.1260 0.9828 -1.2472 16 6 5.5861 0.9840 -1.3673 17 6 5.9863 0.4128 -2.7290 18 1 5.6314 1.0745 -3.5192 19 6 7.5101 0.2980 -2.8060 20 7 5.3876 -0.9137 -2.8972 21 6 5.7096 -1.9877 -1.9544 22 6 4.5268 -1.1496 -3.9358 23 1 3.8212 -0.3891 -4.2357 24 6 4.5612 -2.3663 -4.6030 25 7 3.4959 -2.7941 -5.2470 26 14 6.1193 -3.3965 -4.5871 27 1 6.0467 -4.3868 -3.4829 28 1 6.2549 -4.1091 -5.8829 29 1 7.2951 -2.5127 -4.3828 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 0.0743 2.3808 -0.8405 36 1 -1.9271 3.8123 -0.8970 37 1 -2.5617 5.1245 1.0857 38 1 -1.2025 5.0023 3.1341 39 1 3.5797 0.6491 -1.9761 40 1 5.9572 2.0051 -1.2780 41 1 6.0163 0.3706 -0.5756 42 1 7.9556 1.2849 -2.6809 43 1 7.8650 -0.3638 -2.0159 44 1 7.7952 -0.1094 -3.7760 45 1 5.0595 -1.9131 -1.0827 46 1 5.5596 -2.9528 -2.4380 47 1 6.7496 -1.8961 -1.6408 48 1 3.5201 -3.6442 -5.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506039232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:08 Heat of formation + Delta-G solvation = -84.233040 kcal Electronic energy + Delta-G solvation = -30292.422581 eV Core-core repulsion = 26069.658877 eV Total energy + Delta-G solvation = -4222.763704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.83674 -41.82911 -40.40555 -38.75325 -38.21525 -35.58652 -34.80147 -33.79740 -31.89229 -31.66337 -30.99048 -28.98603 -28.02461 -26.66686 -25.03255 -24.41170 -23.47906 -22.86363 -21.31752 -20.88981 -19.80292 -18.98957 -18.52567 -17.98931 -17.49160 -17.45251 -17.09854 -16.95641 -16.43816 -16.16694 -15.92910 -15.56806 -15.42420 -15.40358 -15.03240 -14.78856 -14.35153 -14.26831 -14.11502 -13.97620 -13.83421 -13.71963 -13.39195 -13.14362 -12.97466 -12.93436 -12.82181 -12.64659 -12.60827 -12.38459 -12.29335 -12.04153 -12.02136 -11.65731 -11.61376 -11.58214 -10.86429 -10.58684 -10.07608 -9.91430 -9.22364 -8.75384 -8.17025 -5.53399 0.13242 0.25020 1.34204 1.42678 1.46044 1.54540 1.56142 2.45962 2.49123 2.61352 3.09967 3.23939 3.32684 3.48625 3.59152 3.66909 3.81711 3.93825 3.98490 4.15158 4.30041 4.32910 4.35353 4.37260 4.52917 4.53279 4.56059 4.67038 4.70055 4.79908 4.86301 4.92995 4.96795 5.00853 5.04995 5.05439 5.10520 5.24054 5.25845 5.27818 5.34989 5.43996 5.50919 5.68608 5.96982 6.19540 6.22658 6.51414 6.99640 7.13380 7.64949 8.09969 9.01187 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017448 B = 0.002901 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.369544 B = 9649.651935 C =10496.233009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.072 3.928 4 H 0.127 0.873 5 O -0.305 6.305 6 C 0.075 3.925 7 C -0.190 4.190 8 C -0.080 4.080 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.029 3.971 12 F -0.154 7.154 13 C 0.507 3.493 14 O -0.575 6.575 15 N -0.696 5.696 16 C 0.116 3.884 17 C 0.157 3.843 18 H 0.079 0.921 19 C -0.157 4.157 20 N -0.610 5.610 21 C 0.110 3.890 22 C -0.252 4.252 23 H 0.063 0.937 24 C -0.009 4.009 25 N -0.938 5.938 26 Si 0.927 3.073 27 H -0.285 1.285 28 H -0.316 1.316 29 H -0.258 1.258 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.031 0.969 47 H 0.049 0.951 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 13.186 9.234 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.013 3.987 4 H 0.144 0.856 5 O -0.218 6.218 6 C 0.029 3.971 7 C -0.208 4.208 8 C -0.098 4.098 9 C -0.140 4.140 10 C -0.133 4.133 11 C 0.010 3.990 12 F -0.133 7.133 13 C 0.293 3.707 14 O -0.455 6.455 15 N -0.348 5.348 16 C -0.009 4.009 17 C 0.051 3.949 18 H 0.097 0.903 19 C -0.216 4.216 20 N -0.334 5.334 21 C -0.035 4.035 22 C -0.381 4.381 23 H 0.080 0.920 24 C -0.207 4.207 25 N -0.582 5.582 26 Si 0.757 3.243 27 H -0.213 1.213 28 H -0.245 1.245 29 H -0.182 1.182 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.188 0.812 38 H 0.178 0.822 39 H 0.251 0.749 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.154 13.310 9.985 18.991 hybrid contribution 0.945 -1.386 -0.338 1.711 sum -8.210 11.924 9.647 17.397 Atomic orbital electron populations 1.21884 0.92737 1.03366 1.02505 1.21943 0.98809 0.92528 1.03857 1.22459 0.91656 0.96479 0.88107 0.85589 1.86224 1.42406 1.59289 1.33898 1.19430 0.88969 0.93258 0.95421 1.21563 0.97914 1.04368 0.96961 1.21484 0.94850 0.93446 1.00052 1.21397 1.00842 1.00387 0.91362 1.21356 0.92373 0.97884 1.01734 1.17575 0.95574 1.03581 0.82291 1.91444 1.76378 1.95636 1.49873 1.20657 0.90232 0.77524 0.82317 1.90682 1.65998 1.48505 1.40320 1.45807 1.08661 1.62509 1.17839 1.21856 0.79399 1.00754 0.98926 1.20869 0.93124 0.86648 0.94287 0.90259 1.22133 0.95671 1.02370 1.01470 1.44211 1.52637 1.07974 1.28610 1.21293 0.98288 0.91227 0.92644 1.18701 1.09966 1.00938 1.08533 0.91975 1.25964 0.98259 0.99467 0.97011 1.69970 1.28663 1.21425 1.38107 0.86146 0.84192 0.79041 0.74907 1.21252 1.24515 1.18163 0.91094 0.92926 0.90343 0.88995 0.91856 0.82888 0.81640 0.81247 0.82161 0.74896 0.90786 0.92892 0.90238 0.92868 0.93474 0.96317 0.95087 0.93204 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.47 71.98 0.61 -2.44 16 2 C -0.13 -3.43 5.61 30.59 0.17 -3.26 16 3 C 0.07 2.01 2.54 29.85 0.08 2.09 16 4 H 0.13 2.79 5.44 -2.39 -0.01 2.77 16 5 O -0.30 -9.80 8.99 -74.03 -0.67 -10.47 16 6 C 0.08 1.97 5.64 22.53 0.13 2.10 16 7 C -0.19 -3.56 7.33 22.36 0.16 -3.39 16 8 C -0.08 -1.04 10.04 22.26 0.22 -0.82 16 9 C -0.12 -1.47 10.04 22.28 0.22 -1.25 16 10 C -0.11 -1.97 10.02 22.30 0.22 -1.75 16 11 C 0.03 0.76 7.31 22.45 0.16 0.93 16 12 F -0.15 -4.85 17.11 44.97 0.77 -4.08 16 13 C 0.51 17.23 7.18 87.66 0.63 17.86 16 14 O -0.58 -24.27 16.51 15.95 0.26 -24.01 16 15 N -0.70 -22.04 5.29 -463.07 -2.45 -24.49 16 16 C 0.12 3.64 4.97 86.38 0.43 4.07 16 17 C 0.16 5.19 2.88 44.99 0.13 5.32 16 18 H 0.08 2.64 7.89 -2.39 -0.02 2.62 16 19 C -0.16 -4.60 9.16 71.98 0.66 -3.94 16 20 N -0.61 -24.69 1.82 -702.81 -1.28 -25.97 16 21 C 0.11 4.33 8.55 127.77 1.09 5.42 16 22 C -0.25 -12.27 9.53 84.03 0.80 -11.47 16 23 H 0.06 3.21 8.06 -2.91 -0.02 3.18 16 24 C -0.01 -0.50 5.23 84.86 0.44 -0.06 16 25 N -0.94 -53.68 13.97 21.65 0.30 -53.38 16 26 Si 0.93 43.27 25.25 68.60 1.73 45.01 16 27 H -0.28 -13.05 6.62 99.48 0.66 -12.39 16 28 H -0.32 -15.34 7.11 99.48 0.71 -14.64 16 29 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.14 6.50 -2.39 -0.02 1.12 16 32 H 0.08 1.31 6.71 -2.39 -0.02 1.30 16 33 H 0.09 2.46 7.77 -2.39 -0.02 2.44 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.80 16 35 H 0.15 2.46 4.27 -2.91 -0.01 2.45 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 38 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.41 13.01 7.59 -92.70 -0.70 12.31 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.77 7.84 -2.39 -0.02 1.75 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.52 6.70 -2.38 -0.02 1.51 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.03 1.34 3.74 -2.39 -0.01 1.33 16 47 H 0.05 1.74 6.45 -2.39 -0.02 1.73 16 48 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -69.51 384.55 5.08 -64.44 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.23 Total: 23.54 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.17 Total: 9.41 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -3.43 Total: -103.84 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.40 Total: -34.48 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.77 Total: -4.08 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.73 Total: 45.01 kcal Total: -69.51 5.08 -64.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506039232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.796 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds