Wall clock time and date at job start Tue Mar 31 2020 22:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87320 * 2 1 4 4 C 1.54323 * 110.01080 * 121.10645 * 2 1 3 5 5 C 1.55149 * 102.94487 * 97.29682 * 4 2 1 6 6 H 1.09003 * 111.00597 * 277.42523 * 5 4 2 7 7 N 1.46902 * 111.00692 * 153.61428 * 5 4 2 8 8 C 1.46899 * 111.00448 * 154.99867 * 7 5 4 9 9 C 1.50695 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.29447 * 117.96288 * 95.00163 * 9 8 7 11 11 C 1.50069 * 124.07741 * 180.44922 * 10 9 8 12 12 C 1.53024 * 110.14536 * 342.86684 * 11 10 9 13 13 C 1.53393 * 108.43783 * 49.43458 * 12 11 10 14 14 C 1.50071 * 117.96370 * 274.73333 * 9 8 7 15 15 C 1.54689 * 101.68030 * 35.33357 * 5 4 2 16 16 N 1.47027 * 109.88237 * 238.98673 * 2 1 3 17 17 C 1.34776 * 125.64365 * 59.33186 * 16 2 1 18 18 O 1.21280 * 120.00458 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99564 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.46925 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99642 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00322 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99700 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99693 * 25 23 21 29 29 H 1.09000 * 109.47123 * 179.55507 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.55341 * 1 2 3 31 31 H 1.08994 * 109.47409 * 59.55827 * 1 2 3 32 32 H 1.09005 * 110.71657 * 215.65965 * 4 2 1 33 33 H 1.09003 * 110.71866 * 338.92809 * 4 2 1 34 34 H 1.00904 * 110.99995 * 278.95164 * 7 5 4 35 35 H 1.09002 * 109.46702 * 300.00014 * 8 7 5 36 36 H 1.09000 * 109.47034 * 59.99874 * 8 7 5 37 37 H 1.07999 * 117.96131 * 0.46058 * 10 9 8 38 38 H 1.08996 * 109.35720 * 103.07180 * 11 10 9 39 39 H 1.08992 * 109.35642 * 222.79754 * 11 10 9 40 40 H 1.08996 * 109.64508 * 169.12514 * 12 11 10 41 41 H 1.09005 * 109.64045 * 289.54294 * 12 11 10 42 42 H 1.08993 * 109.64103 * 52.25389 * 13 12 11 43 43 H 1.09000 * 109.63950 * 172.67040 * 13 12 11 44 44 H 1.08995 * 109.35794 * 283.10316 * 14 9 8 45 45 H 1.09001 * 109.35005 * 42.68363 * 14 9 8 46 46 H 1.09004 * 110.39478 * 204.36457 * 15 5 4 47 47 H 1.09004 * 110.23554 * 82.11509 * 15 5 4 48 48 H 1.08998 * 109.47573 * 60.00437 * 19 17 16 49 49 H 1.09000 * 109.46955 * 299.99406 * 19 17 16 50 50 H 0.97004 * 120.00251 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7491 1.2416 5 6 2.3575 -2.1681 0.6901 6 1 1.4521 -2.7742 0.6589 7 7 3.4040 -2.8302 1.4802 8 6 3.2911 -4.2917 1.3840 9 6 4.3782 -4.9347 2.2059 10 6 4.0932 -5.2904 3.4175 11 6 5.0712 -5.9318 4.3577 12 6 6.2685 -6.4809 3.5788 13 6 6.7836 -5.3809 2.6421 14 6 5.7221 -5.1286 1.5669 15 6 2.8553 -1.8498 -0.7395 16 7 2.0300 -0.7124 -1.1850 17 6 1.7718 -0.3834 -2.4662 18 8 1.0714 0.5744 -2.7171 19 6 2.3525 -1.2065 -3.5871 20 16 1.8284 -0.5165 -5.1764 21 6 2.6273 -1.6385 -6.2753 22 1 3.2215 -2.4496 -5.8811 23 6 2.4928 -1.4798 -7.6477 24 7 1.7682 -0.4916 -8.1281 25 14 3.3391 -2.6697 -8.8128 26 1 4.0867 -3.6843 -8.0273 27 1 4.2835 -1.9234 -9.6826 28 1 2.3205 -3.3470 -9.6547 29 1 -0.3633 -1.0276 -0.0080 30 1 -0.3633 0.5069 0.8940 31 1 -0.3634 0.5206 -0.8859 32 1 2.9684 -0.2810 1.6161 33 1 1.2961 -0.7907 2.0199 34 1 4.3215 -2.5191 1.1981 35 1 2.3175 -4.6064 1.7599 36 1 3.3942 -4.5962 0.3425 37 1 3.0889 -5.1146 3.7739 38 1 5.4180 -5.1916 5.0787 39 1 4.5811 -6.7492 4.8865 40 1 7.0569 -6.7691 4.2740 41 1 5.9594 -7.3482 2.9954 42 1 6.9586 -4.4676 3.2108 43 1 7.7131 -5.7043 2.1734 44 1 5.6802 -5.9809 0.8888 45 1 5.9866 -4.2338 1.0035 46 1 2.7038 -2.7079 -1.3944 47 1 3.9084 -1.5691 -0.7183 48 1 2.0004 -2.2346 -3.5032 49 1 3.4406 -1.1887 -3.5249 50 1 1.3284 0.1261 -7.5232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507301270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:52 Heat of formation + Delta-G solvation = -41.714416 kcal Electronic energy + Delta-G solvation = -26792.766395 eV Core-core repulsion = 23138.059613 eV Total energy + Delta-G solvation = -3654.706782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27512 -39.15237 -37.71233 -35.40460 -32.54912 -32.29508 -32.08220 -31.09938 -29.18418 -28.76101 -25.95021 -25.14782 -24.85378 -23.52452 -22.49553 -21.78257 -20.92733 -19.07444 -18.23300 -17.95929 -16.91383 -16.63521 -16.08890 -15.68879 -15.16979 -14.87547 -14.69579 -14.38259 -14.14028 -13.99707 -13.88886 -13.82797 -13.40104 -13.32464 -13.18982 -12.94765 -12.65401 -12.62151 -12.44506 -12.38751 -12.26117 -12.09083 -11.88086 -11.74478 -11.57191 -11.19813 -11.11523 -10.92066 -10.87959 -10.76012 -10.45538 -10.22721 -9.60854 -9.49910 -9.18475 -9.03069 -8.78970 -8.56408 -8.23915 -6.69293 -6.64276 -4.02193 1.87530 2.76240 2.95308 3.30500 3.38710 3.40521 3.52490 3.86736 4.21394 4.24305 4.29272 4.36904 4.43040 4.53829 4.70372 4.82658 4.87979 4.95755 4.96570 5.01642 5.07240 5.12306 5.20191 5.20596 5.21385 5.28158 5.37446 5.40665 5.44875 5.47830 5.51407 5.55493 5.57140 5.60677 5.66594 5.70137 5.74543 5.77723 5.81431 5.94733 5.97498 6.03538 6.25047 6.31625 6.49147 6.62930 6.70224 6.96081 7.58871 7.90714 8.46123 8.48294 9.25093 10.79783 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.002490 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.421742 B =11241.509676 C =13576.727480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.113 4.113 5 C 0.076 3.924 6 H 0.093 0.907 7 N -0.668 5.668 8 C 0.088 3.912 9 C -0.125 4.125 10 C -0.134 4.134 11 C -0.091 4.091 12 C -0.122 4.122 13 C -0.119 4.119 14 C -0.084 4.084 15 C 0.074 3.926 16 N -0.618 5.618 17 C 0.548 3.452 18 O -0.513 6.513 19 C -0.124 4.124 20 S -0.116 6.116 21 C -0.607 4.607 22 H 0.066 0.934 23 C 0.035 3.965 24 N -0.885 5.885 25 Si 1.090 2.910 26 H -0.288 1.288 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.344 0.656 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -10.517 27.335 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.035 4.035 6 H 0.111 0.889 7 N -0.298 5.298 8 C -0.040 4.040 9 C -0.125 4.125 10 C -0.153 4.153 11 C -0.128 4.128 12 C -0.159 4.159 13 C -0.156 4.156 14 C -0.121 4.121 15 C -0.051 4.051 16 N -0.356 5.356 17 C 0.336 3.664 18 O -0.387 6.387 19 C -0.275 4.275 20 S 0.111 5.889 21 C -0.755 4.755 22 H 0.084 0.916 23 C -0.176 4.176 24 N -0.519 5.519 25 Si 0.916 3.084 26 H -0.214 1.214 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.803 -9.359 25.858 28.105 hybrid contribution 1.015 -1.109 0.945 1.776 sum 6.818 -10.468 26.803 29.572 Atomic orbital electron populations 1.22153 0.94713 1.02223 1.03056 1.21548 0.94854 0.96437 0.84083 0.90763 1.22694 1.02050 0.94075 0.96325 1.22750 0.95468 0.95794 0.89514 0.88871 1.60631 1.06873 1.05111 1.57214 1.21134 0.97746 0.87240 0.97885 1.20692 0.95653 1.00404 0.95749 1.21920 0.99675 0.99206 0.94514 1.20454 0.95175 0.99766 0.97377 1.21612 0.97510 0.98281 0.98505 1.21605 0.97791 0.99155 0.97086 1.20416 0.92045 1.01863 0.97750 1.22992 0.95327 0.89930 0.96887 1.48453 1.51737 1.30473 1.04911 1.19968 0.80177 0.84749 0.81507 1.90691 1.37193 1.28199 1.82577 1.23295 1.03678 1.02263 0.98285 1.84821 1.68087 1.42185 0.93848 1.23743 1.39317 1.17361 0.95045 0.91620 1.26062 0.96206 0.99318 0.95977 1.70735 1.28024 1.14139 1.38981 0.83247 0.75872 0.74484 0.74753 1.21428 1.20852 1.20853 0.92720 0.91908 0.90751 0.90178 0.89661 0.83661 0.90468 0.94305 0.87814 0.90852 0.91247 0.91858 0.91803 0.91625 0.91734 0.90942 0.91295 0.90644 0.91438 0.89277 0.89246 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.07 37.16 0.34 -1.67 16 2 C 0.13 1.63 3.49 -66.95 -0.23 1.40 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.00 6.20 -24.90 -0.15 -1.15 16 5 C 0.08 0.66 3.36 -65.69 -0.22 0.44 16 6 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 7 N -0.67 -5.15 6.40 -105.85 -0.68 -5.82 16 8 C 0.09 0.66 5.55 -4.98 -0.03 0.64 16 9 C -0.12 -0.91 5.35 -100.94 -0.54 -1.45 16 10 C -0.13 -0.95 9.37 -35.90 -0.34 -1.29 16 11 C -0.09 -0.54 6.12 -28.18 -0.17 -0.71 16 12 C -0.12 -0.70 6.00 -26.52 -0.16 -0.86 16 13 C -0.12 -0.73 6.02 -26.44 -0.16 -0.88 16 14 C -0.08 -0.56 5.80 -28.10 -0.16 -0.73 16 15 C 0.07 0.81 6.29 -2.65 -0.02 0.79 16 16 N -0.62 -8.96 3.08 -163.15 -0.50 -9.46 16 17 C 0.55 10.65 7.65 -10.98 -0.08 10.56 16 18 O -0.51 -11.79 14.74 5.56 0.08 -11.71 16 19 C -0.12 -2.60 5.17 36.01 0.19 -2.41 16 20 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 21 C -0.61 -17.60 9.50 30.94 0.29 -17.31 16 22 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 23 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 24 N -0.88 -27.66 13.67 55.49 0.76 -26.90 16 25 Si 1.09 25.14 29.92 -169.99 -5.09 20.05 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.67 7.83 -51.93 -0.41 0.27 16 34 H 0.34 2.53 8.18 -39.29 -0.32 2.20 16 35 H 0.08 0.59 7.74 -51.93 -0.40 0.18 16 36 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 37 H 0.10 0.74 7.74 -52.49 -0.41 0.33 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 42 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 46 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 47 H 0.07 0.68 7.74 -51.93 -0.40 0.28 16 48 H 0.09 1.75 7.84 -51.92 -0.41 1.34 16 49 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 50 H 0.28 8.90 7.13 -40.82 -0.29 8.61 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -33.94 407.11 -11.84 -45.78 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.90 Total: 0.90 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.55 Total: -13.71 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.42 Total: -42.19 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.94 -11.84 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.065 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds