Wall clock time and date at job start Tue Mar 31 2020 22:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87320 * 2 1 4 4 C 1.54323 * 110.01080 * 121.10645 * 2 1 3 5 5 C 1.55149 * 102.94487 * 97.29682 * 4 2 1 6 6 H 1.09003 * 111.00597 * 277.42523 * 5 4 2 7 7 N 1.46902 * 111.00692 * 153.61428 * 5 4 2 8 8 C 1.46899 * 111.00448 * 154.99867 * 7 5 4 9 9 C 1.50695 * 109.47348 * 180.02562 * 8 7 5 10 10 C 1.29447 * 117.96288 * 95.00163 * 9 8 7 11 11 C 1.50069 * 124.07741 * 180.44922 * 10 9 8 12 12 C 1.53024 * 110.14536 * 342.86684 * 11 10 9 13 13 C 1.53393 * 108.43783 * 49.43458 * 12 11 10 14 14 C 1.50071 * 117.96370 * 274.73333 * 9 8 7 15 15 C 1.54689 * 101.68030 * 35.33357 * 5 4 2 16 16 N 1.47027 * 109.88237 * 238.98673 * 2 1 3 17 17 C 1.34776 * 125.64365 * 59.33186 * 16 2 1 18 18 O 1.21280 * 120.00458 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99564 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.46925 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99642 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00322 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99700 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99693 * 25 23 21 29 29 H 1.09000 * 109.47123 * 179.55507 * 1 2 3 30 30 H 1.09001 * 109.47093 * 299.55341 * 1 2 3 31 31 H 1.08994 * 109.47409 * 59.55827 * 1 2 3 32 32 H 1.09005 * 110.71657 * 215.65965 * 4 2 1 33 33 H 1.09003 * 110.71866 * 338.92809 * 4 2 1 34 34 H 1.00904 * 110.99995 * 278.95164 * 7 5 4 35 35 H 1.09002 * 109.46702 * 300.00014 * 8 7 5 36 36 H 1.09000 * 109.47034 * 59.99874 * 8 7 5 37 37 H 1.07999 * 117.96131 * 0.46058 * 10 9 8 38 38 H 1.08996 * 109.35720 * 103.07180 * 11 10 9 39 39 H 1.08992 * 109.35642 * 222.79754 * 11 10 9 40 40 H 1.08996 * 109.64508 * 169.12514 * 12 11 10 41 41 H 1.09005 * 109.64045 * 289.54294 * 12 11 10 42 42 H 1.08993 * 109.64103 * 52.25389 * 13 12 11 43 43 H 1.09000 * 109.63950 * 172.67040 * 13 12 11 44 44 H 1.08995 * 109.35794 * 283.10316 * 14 9 8 45 45 H 1.09001 * 109.35005 * 42.68363 * 14 9 8 46 46 H 1.09004 * 110.39478 * 204.36457 * 15 5 4 47 47 H 1.09004 * 110.23554 * 82.11509 * 15 5 4 48 48 H 1.08998 * 109.47573 * 60.00437 * 19 17 16 49 49 H 1.09000 * 109.46955 * 299.99406 * 19 17 16 50 50 H 0.97004 * 120.00251 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7491 1.2416 5 6 2.3575 -2.1681 0.6901 6 1 1.4521 -2.7742 0.6589 7 7 3.4040 -2.8302 1.4802 8 6 3.2911 -4.2917 1.3840 9 6 4.3782 -4.9347 2.2059 10 6 4.0932 -5.2904 3.4175 11 6 5.0712 -5.9318 4.3577 12 6 6.2685 -6.4809 3.5788 13 6 6.7836 -5.3809 2.6421 14 6 5.7221 -5.1286 1.5669 15 6 2.8553 -1.8498 -0.7395 16 7 2.0300 -0.7124 -1.1850 17 6 1.7718 -0.3834 -2.4662 18 8 1.0714 0.5744 -2.7171 19 6 2.3525 -1.2065 -3.5871 20 16 1.8284 -0.5165 -5.1764 21 6 2.6273 -1.6385 -6.2753 22 1 3.2215 -2.4496 -5.8811 23 6 2.4928 -1.4798 -7.6477 24 7 1.7682 -0.4916 -8.1281 25 14 3.3391 -2.6697 -8.8128 26 1 4.0867 -3.6843 -8.0273 27 1 4.2835 -1.9234 -9.6826 28 1 2.3205 -3.3470 -9.6547 29 1 -0.3633 -1.0276 -0.0080 30 1 -0.3633 0.5069 0.8940 31 1 -0.3634 0.5206 -0.8859 32 1 2.9684 -0.2810 1.6161 33 1 1.2961 -0.7907 2.0199 34 1 4.3215 -2.5191 1.1981 35 1 2.3175 -4.6064 1.7599 36 1 3.3942 -4.5962 0.3425 37 1 3.0889 -5.1146 3.7739 38 1 5.4180 -5.1916 5.0787 39 1 4.5811 -6.7492 4.8865 40 1 7.0569 -6.7691 4.2740 41 1 5.9594 -7.3482 2.9954 42 1 6.9586 -4.4676 3.2108 43 1 7.7131 -5.7043 2.1734 44 1 5.6802 -5.9809 0.8888 45 1 5.9866 -4.2338 1.0035 46 1 2.7038 -2.7079 -1.3944 47 1 3.9084 -1.5691 -0.7183 48 1 2.0004 -2.2346 -3.5032 49 1 3.4406 -1.1887 -3.5249 50 1 1.3284 0.1261 -7.5232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507301270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:52 Heat of formation + Delta-G solvation = -62.262148 kcal Electronic energy + Delta-G solvation = -26793.657411 eV Core-core repulsion = 23138.059613 eV Total energy + Delta-G solvation = -3655.597798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42983 -39.77910 -38.87087 -36.19945 -34.78381 -33.50536 -32.75965 -31.58443 -30.46859 -29.78922 -27.13056 -26.87098 -25.76729 -24.06879 -23.51260 -22.28256 -21.81715 -20.65802 -19.99889 -18.53489 -18.14713 -17.57800 -17.11529 -16.85841 -16.36784 -16.02774 -15.85492 -15.67826 -15.22491 -14.90320 -14.73106 -14.63843 -14.53571 -14.36686 -14.27626 -14.10879 -14.00818 -13.80537 -13.54767 -13.20998 -13.16807 -13.03023 -12.93912 -12.78385 -12.68997 -12.36687 -11.98995 -11.95100 -11.66573 -11.65007 -11.59914 -11.28257 -11.14695 -11.02789 -10.96935 -10.37011 -9.86925 -9.72357 -9.38736 -8.96231 -8.92141 -6.31957 1.09338 1.33545 1.42779 1.48944 1.59897 1.76009 1.93083 2.30043 2.99121 2.99775 3.16463 3.44548 3.51964 3.75831 3.78342 3.88636 3.96303 4.04025 4.06685 4.08766 4.20751 4.25315 4.31472 4.34180 4.39337 4.48995 4.53566 4.63150 4.63630 4.68982 4.73846 4.75541 4.83816 4.91175 5.01169 5.03194 5.07093 5.08059 5.10743 5.22215 5.25013 5.35168 5.42545 5.48886 5.60444 5.78828 5.96888 6.11223 6.17224 6.26401 6.36906 6.99414 7.02798 8.47211 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.002490 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.421742 B =11241.509676 C =13576.727480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.098 4.098 5 C 0.089 3.911 6 H 0.095 0.905 7 N -0.661 5.661 8 C 0.090 3.910 9 C -0.132 4.132 10 C -0.137 4.137 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.085 4.085 15 C 0.066 3.934 16 N -0.608 5.608 17 C 0.545 3.455 18 O -0.559 6.559 19 C -0.100 4.100 20 S -0.192 6.192 21 C -0.612 4.612 22 H 0.073 0.927 23 C -0.019 4.019 24 N -0.912 5.912 25 Si 1.142 2.858 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.349 0.651 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 -12.582 29.530 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.084 0.916 4 C -0.136 4.136 5 C -0.023 4.023 6 H 0.113 0.887 7 N -0.292 5.292 8 C -0.038 4.038 9 C -0.132 4.132 10 C -0.156 4.156 11 C -0.128 4.128 12 C -0.159 4.159 13 C -0.156 4.156 14 C -0.122 4.122 15 C -0.058 4.058 16 N -0.343 5.343 17 C 0.333 3.667 18 O -0.438 6.438 19 C -0.251 4.251 20 S 0.035 5.965 21 C -0.760 4.760 22 H 0.091 0.909 23 C -0.222 4.222 24 N -0.547 5.547 25 Si 0.960 3.040 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.392 -11.446 28.132 31.258 hybrid contribution 0.536 -0.481 0.447 0.848 sum 7.928 -11.928 28.579 31.967 Atomic orbital electron populations 1.22104 0.94804 1.02255 1.02499 1.21803 0.94879 0.96478 0.84358 0.91612 1.22640 1.02931 0.93316 0.94745 1.22631 0.95771 0.95907 0.87943 0.88720 1.60642 1.06853 1.05251 1.56426 1.21124 0.97923 0.86984 0.97789 1.20730 0.95815 1.00789 0.95869 1.22065 0.99942 0.98961 0.94672 1.20484 0.95068 1.00040 0.97256 1.21616 0.97717 0.97979 0.98565 1.21605 0.97825 0.99186 0.96986 1.20429 0.92029 1.01814 0.97896 1.23329 0.95619 0.88537 0.98328 1.48397 1.50900 1.31142 1.03872 1.19674 0.80035 0.84145 0.82847 1.90677 1.39412 1.30100 1.83562 1.23155 1.04417 1.02622 0.94947 1.85053 1.69130 1.43822 0.98532 1.24048 1.38959 1.17338 0.95617 0.90859 1.27869 0.95894 1.00060 0.98410 1.70860 1.29846 1.15351 1.38686 0.82647 0.75373 0.72873 0.73114 1.18715 1.19888 1.19897 0.92280 0.89087 0.94717 0.89061 0.87797 0.83145 0.90447 0.94589 0.87867 0.90527 0.90526 0.90977 0.92193 0.91846 0.91274 0.91197 0.91188 0.90638 0.89967 0.87794 0.87770 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.07 71.98 0.65 -3.11 16 2 C 0.13 2.91 3.49 45.34 0.16 3.07 16 3 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.10 -1.42 6.20 31.78 0.20 -1.22 16 5 C 0.09 1.29 3.36 46.23 0.16 1.45 16 6 H 0.09 1.43 7.83 -2.39 -0.02 1.41 16 7 N -0.66 -8.22 6.40 -488.81 -3.13 -11.35 16 8 C 0.09 1.14 5.55 85.56 0.48 1.62 16 9 C -0.13 -1.65 5.35 -15.10 -0.08 -1.73 16 10 C -0.14 -1.68 9.37 27.03 0.25 -1.43 16 11 C -0.09 -0.91 6.12 29.66 0.18 -0.73 16 12 C -0.12 -1.17 6.00 30.73 0.18 -0.99 16 13 C -0.12 -1.23 6.02 30.78 0.19 -1.05 16 14 C -0.08 -0.99 5.80 29.71 0.17 -0.81 16 15 C 0.07 1.29 6.29 86.78 0.55 1.84 16 16 N -0.61 -16.96 3.08 -788.48 -2.43 -19.40 16 17 C 0.55 21.35 7.65 87.66 0.67 22.03 16 18 O -0.56 -26.74 14.74 -3.03 -0.04 -26.78 16 19 C -0.10 -4.17 5.17 71.24 0.37 -3.80 16 20 S -0.19 -10.82 19.60 -56.49 -1.11 -11.92 16 21 C -0.61 -35.72 9.50 67.95 0.65 -35.08 16 22 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 23 C -0.02 -1.12 5.49 84.86 0.47 -0.66 16 24 N -0.91 -58.38 13.67 21.65 0.30 -58.08 16 25 Si 1.14 49.69 29.92 68.60 2.05 51.74 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.11 6.73 -2.39 -0.02 1.09 16 32 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.10 1.22 7.83 -2.39 -0.02 1.20 16 34 H 0.35 4.03 8.18 -89.69 -0.73 3.30 16 35 H 0.08 0.99 7.74 -2.39 -0.02 0.97 16 36 H 0.04 0.48 8.11 -2.39 -0.02 0.47 16 37 H 0.10 1.26 7.74 -2.91 -0.02 1.23 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.63 8.13 -2.38 -0.02 0.61 16 42 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 46 H 0.08 1.51 7.48 -2.38 -0.02 1.49 16 47 H 0.08 1.42 7.74 -2.39 -0.02 1.40 16 48 H 0.10 4.00 7.84 -2.40 -0.02 3.98 16 49 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 50 H 0.26 17.39 7.13 -92.70 -0.66 16.73 16 Total: -1.00 -76.22 407.11 1.15 -75.07 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.28 Total: 21.33 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 5.23 Total: -20.60 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -5.26 Total: -88.83 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.11 Total: -11.92 kcal Total: -76.22 1.15 -75.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507301270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.810 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds