Wall clock time and date at job start Tue Mar 31 2020 22:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 S 1.81397 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.81396 * 102.99966 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.48163 * 127.83922 * 359.96351 * 8 6 5 10 10 C 1.54771 * 104.35283 * 140.28169 * 9 8 6 11 11 H 1.09000 * 111.60533 * 264.22834 * 10 9 8 12 12 C 1.54160 * 104.96849 * 24.45543 * 10 9 8 13 13 H 1.09006 * 111.36162 * 239.38175 * 12 10 9 14 14 C 1.48145 * 127.83833 * 180.27304 * 8 6 5 15 15 C 1.53033 * 109.71728 * 116.31881 * 12 10 9 16 16 H 1.08998 * 109.64225 * 179.87198 * 15 12 10 17 17 C 1.53075 * 109.16051 * 300.62901 * 15 12 10 18 18 C 1.52909 * 110.00962 * 59.27792 * 17 15 12 19 19 C 1.53202 * 108.86158 * 141.54693 * 10 9 8 20 20 H 1.09006 * 110.97540 * 67.83999 * 19 10 9 21 21 N 1.47638 * 108.08693 * 189.19349 * 19 10 9 22 22 C 1.36935 * 122.04206 * 238.63642 * 21 19 10 23 23 H 1.08000 * 120.00009 * 359.97304 * 22 21 19 24 24 C 1.38817 * 119.99968 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00222 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99799 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47141 * 59.99912 * 26 24 22 28 28 H 1.48502 * 109.46892 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46944 * 299.99471 * 26 24 22 30 30 C 1.47578 * 115.91896 * 58.61085 * 21 19 10 31 31 H 1.08993 * 109.47508 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.46876 * 60.00353 * 1 2 3 33 33 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47054 * 239.99763 * 2 1 3 35 35 H 1.09002 * 109.46876 * 119.99647 * 2 1 3 36 36 H 1.09007 * 109.47059 * 59.99610 * 3 2 1 37 37 H 1.08994 * 109.47214 * 299.99815 * 3 2 1 38 38 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 39 39 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 40 40 H 1.09006 * 110.41847 * 259.09747 * 9 8 6 41 41 H 1.09002 * 110.41673 * 21.55611 * 9 8 6 42 42 H 1.09001 * 110.39998 * 338.24930 * 14 8 6 43 43 H 1.08998 * 110.39609 * 100.65498 * 14 8 6 44 44 H 1.09001 * 109.37623 * 179.44954 * 17 15 12 45 45 H 1.09004 * 109.37906 * 299.10822 * 17 15 12 46 46 H 1.09003 * 109.44962 * 240.73580 * 18 17 15 47 47 H 1.09006 * 109.41884 * 120.81925 * 18 17 15 48 48 H 0.96993 * 119.99716 * 180.02562 * 25 24 22 49 49 H 1.09003 * 109.99405 * 240.97420 * 30 21 19 50 50 H 1.09003 * 110.07245 * 119.64439 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3799 0.0010 7 8 6.4804 2.4047 0.0019 8 7 6.2974 4.6156 -0.0050 9 6 5.5874 5.9160 -0.0139 10 6 6.4139 6.8110 0.9408 11 1 5.9969 6.8160 1.9478 12 6 7.8291 6.1997 0.9341 13 1 8.1336 5.8923 1.9346 14 6 7.7329 4.9818 -0.0106 15 6 8.8230 7.2049 0.3479 16 1 9.8235 6.7723 0.3458 17 6 8.3978 7.5575 -1.0797 18 6 6.9914 8.1575 -1.0737 19 6 6.4687 8.2300 0.3660 20 1 5.4855 8.6999 0.3923 21 7 7.4368 9.0100 1.1623 22 6 7.0790 10.1549 1.8229 23 1 6.0615 10.5131 1.7703 24 6 8.0241 10.8551 2.5602 25 7 9.2640 10.4183 2.6247 26 14 7.5360 12.4172 3.4607 27 1 6.4694 12.1077 4.4464 28 1 8.7187 12.9710 4.1677 29 1 7.0323 13.4152 2.4832 30 6 8.8136 8.4802 1.2035 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.8427 3.6802 0.8895 39 1 3.8435 3.6792 -0.8905 40 1 5.5767 6.3366 -1.0195 41 1 4.5705 5.7966 0.3601 42 1 8.3367 4.1576 0.3692 43 1 8.0513 5.2551 -1.0165 44 1 9.0981 8.2810 -1.4973 45 1 8.4039 6.6558 -1.6921 46 1 6.3272 7.5317 -1.6698 47 1 7.0235 9.1606 -1.4990 48 1 9.9242 10.9074 3.1402 49 1 9.0908 8.2422 2.2304 50 1 9.5084 9.2115 0.7902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565994998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:04 Heat of formation + Delta-G solvation = -1.698138 kcal Electronic energy + Delta-G solvation = -28044.058050 eV Core-core repulsion = 24391.086504 eV Total energy + Delta-G solvation = -3652.971546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.86269 -38.92877 -35.81444 -35.02331 -33.30625 -31.85787 -31.03221 -29.97008 -29.48340 -27.67387 -27.21663 -25.43087 -23.81935 -22.06399 -22.03176 -21.07061 -20.78826 -19.45170 -17.46708 -17.09331 -16.71083 -16.39843 -15.92917 -15.75464 -15.33520 -15.08799 -14.82710 -14.61489 -14.12115 -13.91099 -13.86458 -13.53201 -13.34792 -12.90847 -12.62012 -12.40177 -12.24313 -12.19289 -12.14822 -11.84337 -11.57866 -11.50033 -11.34391 -11.21066 -11.17460 -10.95395 -10.84067 -10.59593 -10.45787 -10.23820 -10.12163 -10.03972 -9.76252 -9.70706 -9.36073 -9.26621 -8.59542 -8.52309 -7.84027 -6.89192 -5.69209 -3.06590 1.22005 2.31878 2.55772 3.00295 3.37489 3.42357 3.43631 4.33612 4.44168 4.45488 4.49765 4.75174 4.82035 4.88148 4.97026 4.99015 5.03369 5.09945 5.23099 5.29185 5.31345 5.36402 5.43675 5.50472 5.53138 5.60608 5.65247 5.68753 5.73027 5.74958 5.83705 5.95063 6.03389 6.08214 6.11125 6.15723 6.29297 6.43533 6.47488 6.64496 6.72691 6.80065 6.89222 6.96890 7.55933 7.59939 7.67377 7.88123 8.09276 8.29042 9.22564 9.83434 10.37119 11.35814 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002468 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.649275 B =11344.153607 C =12169.085448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.107 4.107 4 S -0.188 6.188 5 C -0.121 4.121 6 C 0.548 3.452 7 O -0.529 6.529 8 N -0.616 5.616 9 C 0.094 3.906 10 C -0.105 4.105 11 H 0.080 0.920 12 C -0.079 4.079 13 H 0.077 0.923 14 C 0.103 3.897 15 C -0.111 4.111 16 H 0.066 0.934 17 C -0.105 4.105 18 C -0.135 4.135 19 C 0.181 3.819 20 H 0.068 0.932 21 N -0.599 5.599 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.008 4.008 25 N -0.922 5.922 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.203 3.797 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.252 0.748 49 H 0.049 0.951 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.815 -14.437 -7.634 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.038 5.962 5 C -0.272 4.272 6 C 0.335 3.665 7 O -0.406 6.406 8 N -0.350 5.350 9 C -0.029 4.029 10 C -0.126 4.126 11 H 0.099 0.901 12 C -0.098 4.098 13 H 0.095 0.905 14 C -0.018 4.018 15 C -0.130 4.130 16 H 0.085 0.915 17 C -0.143 4.143 18 C -0.174 4.174 19 C 0.071 3.929 20 H 0.086 0.914 21 N -0.322 5.322 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.079 3.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.614 -15.778 -7.507 20.981 hybrid contribution -1.069 2.149 0.583 2.470 sum -12.683 -13.629 -6.924 19.864 Atomic orbital electron populations 1.21766 0.94683 1.02128 1.02068 1.21223 0.95978 0.93903 1.03476 1.23576 0.95314 1.01699 1.04920 1.87488 1.04371 1.06236 1.98063 1.23450 0.97790 0.98962 1.06994 1.19159 0.88539 0.81902 0.76887 1.90739 1.62055 1.37635 1.50127 1.48939 1.09071 1.04763 1.72215 1.23012 0.96145 0.82467 1.01304 1.22757 0.94382 0.96550 0.98935 0.90132 1.21946 0.95880 0.93472 0.98514 0.90476 1.22761 0.80906 0.97378 1.00795 1.21819 0.97039 0.98153 0.95995 0.91546 1.21471 0.97230 0.99224 0.96358 1.22196 0.96237 1.00243 0.98700 1.20496 0.93590 0.89146 0.89623 0.91356 1.44572 1.05224 1.25908 1.56512 1.19212 0.95047 0.99233 1.23066 0.90823 1.24795 0.95773 0.99202 1.00583 1.70009 1.01805 1.39985 1.45188 0.86247 0.77055 0.83170 0.79537 1.21296 1.21696 1.21283 1.21104 0.85590 0.88873 0.96559 0.92486 0.92527 0.92122 0.90959 0.90925 0.90094 0.90139 0.87300 0.87395 0.89662 0.91122 0.90608 0.90177 0.92436 0.93204 0.93016 0.92091 0.93779 0.93302 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.11 -0.74 5.94 -26.73 -0.16 -0.90 16 3 C -0.11 -0.83 5.94 37.16 0.22 -0.61 16 4 S -0.19 -2.20 20.87 -107.50 -2.24 -4.45 16 5 C -0.12 -1.31 5.40 36.01 0.19 -1.12 16 6 C 0.55 8.00 7.93 -10.98 -0.09 7.91 16 7 O -0.53 -9.69 16.13 5.55 0.09 -9.60 16 8 N -0.62 -8.51 3.31 -169.02 -0.56 -9.07 16 9 C 0.09 1.15 6.22 -2.19 -0.01 1.14 16 10 C -0.10 -1.64 3.35 -88.98 -0.30 -1.94 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.08 -1.27 3.14 -89.25 -0.28 -1.55 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.10 1.50 6.34 -2.39 -0.02 1.49 16 15 C -0.11 -1.93 2.87 -90.26 -0.26 -2.18 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -1.66 5.31 -26.74 -0.14 -1.80 16 18 C -0.13 -2.11 5.51 -26.61 -0.15 -2.26 16 19 C 0.18 3.22 3.20 -67.03 -0.21 3.00 16 20 H 0.07 1.20 7.99 -51.93 -0.42 0.78 16 21 N -0.60 -13.77 2.87 -163.27 -0.47 -14.24 16 22 C -0.24 -6.14 9.99 -15.06 -0.15 -6.29 16 23 H 0.07 1.84 7.79 -52.49 -0.41 1.43 16 24 C -0.01 -0.20 5.47 -17.43 -0.10 -0.30 16 25 N -0.92 -25.92 9.76 55.49 0.54 -25.38 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.20 4.60 4.36 -3.15 -0.01 4.59 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 1.01 7.97 -51.92 -0.41 0.60 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.98 5.20 -51.93 -0.27 0.71 16 41 H 0.07 0.72 7.31 -51.93 -0.38 0.34 16 42 H 0.08 1.16 7.88 -51.93 -0.41 0.75 16 43 H 0.08 1.11 5.30 -51.93 -0.28 0.83 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.68 5.79 -51.93 -0.30 0.38 16 46 H 0.05 0.67 5.65 -51.93 -0.29 0.38 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.05 1.26 7.24 -51.93 -0.38 0.88 16 50 H 0.05 1.35 7.21 -51.93 -0.37 0.97 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -30.46 384.21 -11.51 -41.97 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.55 Total: -0.17 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.09 Total: -1.24 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.49 Total: -48.69 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -2.20 SS G_CDS: -2.24 Total: -4.45 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.46 -11.51 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565994998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.272 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds