Wall clock time and date at job start Tue Mar 31 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46908 * 2 1 4 4 S 1.81397 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.81396 * 102.99966 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.48163 * 127.83922 * 359.96351 * 8 6 5 10 10 C 1.54771 * 104.35283 * 140.28169 * 9 8 6 11 11 H 1.09000 * 111.60533 * 264.22834 * 10 9 8 12 12 C 1.54160 * 104.96849 * 24.45543 * 10 9 8 13 13 H 1.09006 * 111.36162 * 239.38175 * 12 10 9 14 14 C 1.48145 * 127.83833 * 180.27304 * 8 6 5 15 15 C 1.53033 * 109.71728 * 116.31881 * 12 10 9 16 16 H 1.08998 * 109.64225 * 179.87198 * 15 12 10 17 17 C 1.53075 * 109.16051 * 300.62901 * 15 12 10 18 18 C 1.52909 * 110.00962 * 59.27792 * 17 15 12 19 19 C 1.53202 * 108.86158 * 141.54693 * 10 9 8 20 20 H 1.09006 * 110.97540 * 67.83999 * 19 10 9 21 21 N 1.47638 * 108.08693 * 189.19349 * 19 10 9 22 22 C 1.36935 * 122.04206 * 238.63642 * 21 19 10 23 23 H 1.08000 * 120.00009 * 359.97304 * 22 21 19 24 24 C 1.38817 * 119.99968 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00222 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99799 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47141 * 59.99912 * 26 24 22 28 28 H 1.48502 * 109.46892 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46944 * 299.99471 * 26 24 22 30 30 C 1.47578 * 115.91896 * 58.61085 * 21 19 10 31 31 H 1.08993 * 109.47508 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.46876 * 60.00353 * 1 2 3 33 33 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47054 * 239.99763 * 2 1 3 35 35 H 1.09002 * 109.46876 * 119.99647 * 2 1 3 36 36 H 1.09007 * 109.47059 * 59.99610 * 3 2 1 37 37 H 1.08994 * 109.47214 * 299.99815 * 3 2 1 38 38 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 39 39 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 40 40 H 1.09006 * 110.41847 * 259.09747 * 9 8 6 41 41 H 1.09002 * 110.41673 * 21.55611 * 9 8 6 42 42 H 1.09001 * 110.39998 * 338.24930 * 14 8 6 43 43 H 1.08998 * 110.39609 * 100.65498 * 14 8 6 44 44 H 1.09001 * 109.37623 * 179.44954 * 17 15 12 45 45 H 1.09004 * 109.37906 * 299.10822 * 17 15 12 46 46 H 1.09003 * 109.44962 * 240.73580 * 18 17 15 47 47 H 1.09006 * 109.41884 * 120.81925 * 18 17 15 48 48 H 0.96993 * 119.99716 * 180.02562 * 25 24 22 49 49 H 1.09003 * 109.99405 * 240.97420 * 30 21 19 50 50 H 1.09003 * 110.07245 * 119.64439 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3799 0.0010 7 8 6.4804 2.4047 0.0019 8 7 6.2974 4.6156 -0.0050 9 6 5.5874 5.9160 -0.0139 10 6 6.4139 6.8110 0.9408 11 1 5.9969 6.8160 1.9478 12 6 7.8291 6.1997 0.9341 13 1 8.1336 5.8923 1.9346 14 6 7.7329 4.9818 -0.0106 15 6 8.8230 7.2049 0.3479 16 1 9.8235 6.7723 0.3458 17 6 8.3978 7.5575 -1.0797 18 6 6.9914 8.1575 -1.0737 19 6 6.4687 8.2300 0.3660 20 1 5.4855 8.6999 0.3923 21 7 7.4368 9.0100 1.1623 22 6 7.0790 10.1549 1.8229 23 1 6.0615 10.5131 1.7703 24 6 8.0241 10.8551 2.5602 25 7 9.2640 10.4183 2.6247 26 14 7.5360 12.4172 3.4607 27 1 6.4694 12.1077 4.4464 28 1 8.7187 12.9710 4.1677 29 1 7.0323 13.4152 2.4832 30 6 8.8136 8.4802 1.2035 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8899 38 1 3.8427 3.6802 0.8895 39 1 3.8435 3.6792 -0.8905 40 1 5.5767 6.3366 -1.0195 41 1 4.5705 5.7966 0.3601 42 1 8.3367 4.1576 0.3692 43 1 8.0513 5.2551 -1.0165 44 1 9.0981 8.2810 -1.4973 45 1 8.4039 6.6558 -1.6921 46 1 6.3272 7.5317 -1.6698 47 1 7.0235 9.1606 -1.4990 48 1 9.9242 10.9074 3.1402 49 1 9.0908 8.2422 2.2304 50 1 9.5084 9.2115 0.7902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565994998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:03 Heat of formation + Delta-G solvation = -17.940175 kcal Electronic energy + Delta-G solvation = -28044.762358 eV Core-core repulsion = 24391.086504 eV Total energy + Delta-G solvation = -3653.675853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17073 -40.16043 -37.20181 -35.54002 -35.01584 -33.30753 -32.19092 -31.68411 -30.61848 -28.68247 -28.08079 -27.03025 -25.18534 -23.64669 -22.63817 -22.44437 -22.18919 -20.54384 -19.15648 -18.27562 -17.86321 -17.50626 -17.12025 -16.80591 -16.59652 -16.26097 -16.13361 -15.94053 -15.59018 -14.94143 -14.60814 -14.40666 -14.34860 -14.13658 -14.01960 -13.72652 -13.59529 -13.37055 -13.21969 -13.01933 -12.86044 -12.80607 -12.55826 -12.40034 -12.33398 -12.18879 -12.08858 -12.07568 -11.85138 -11.75079 -11.70266 -11.15398 -11.08941 -10.86290 -10.80901 -10.69864 -10.46822 -9.73706 -8.80334 -8.69444 -7.72068 -5.10048 0.44269 1.47460 1.48561 1.49524 1.55344 1.60763 1.94793 2.53436 3.32624 3.39925 3.52561 3.70097 3.82792 3.86027 3.92420 3.98192 4.04185 4.15167 4.21701 4.23868 4.29753 4.32469 4.41275 4.45364 4.53863 4.58335 4.63654 4.68427 4.70272 4.76915 4.86175 4.86835 4.91940 5.02008 5.06873 5.14662 5.17293 5.21573 5.28508 5.40008 5.40249 5.45518 5.54405 5.57788 5.65954 5.80589 5.93210 6.31785 6.48461 7.00814 7.21315 7.93345 8.43357 9.30579 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002468 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.649275 B =11344.153607 C =12169.085448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.086 4.086 4 S -0.261 6.261 5 C -0.105 4.105 6 C 0.543 3.457 7 O -0.573 6.573 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.100 4.100 11 H 0.063 0.937 12 C -0.076 4.076 13 H 0.054 0.946 14 C 0.112 3.888 15 C -0.102 4.102 16 H 0.072 0.928 17 C -0.102 4.102 18 C -0.128 4.128 19 C 0.172 3.828 20 H 0.077 0.923 21 N -0.616 5.616 22 C -0.237 4.237 23 H 0.083 0.917 24 C -0.071 4.071 25 N -0.953 5.953 26 Si 0.969 3.031 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.278 1.278 30 C 0.215 3.785 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.046 0.954 48 H 0.241 0.759 49 H 0.004 0.996 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 -15.107 -9.568 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.234 4.234 4 S -0.034 6.034 5 C -0.255 4.255 6 C 0.332 3.668 7 O -0.453 6.453 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.122 4.122 11 H 0.082 0.918 12 C -0.096 4.096 13 H 0.073 0.927 14 C -0.010 4.010 15 C -0.121 4.121 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.166 4.166 19 C 0.065 3.935 20 H 0.095 0.905 21 N -0.339 5.339 22 C -0.367 4.367 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.603 5.603 26 Si 0.799 3.201 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.204 1.204 30 C 0.091 3.909 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.022 0.978 50 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -15.129 -16.453 -9.469 24.275 hybrid contribution -0.024 2.327 1.213 2.624 sum -15.154 -14.127 -8.256 22.302 Atomic orbital electron populations 1.21737 0.93140 1.02709 1.02618 1.21245 0.97111 0.93487 1.02819 1.23601 0.91346 1.02316 1.06180 1.87805 1.08979 1.08357 1.98287 1.23390 0.94796 0.98018 1.09340 1.19802 0.90033 0.81212 0.75728 1.90729 1.63488 1.39052 1.52001 1.48953 1.08694 1.05272 1.71805 1.23023 0.96688 0.80645 1.01325 1.22572 0.94588 0.95958 0.99053 0.91815 1.21813 0.95927 0.93985 0.97853 0.92726 1.22594 0.81825 0.95836 1.00758 1.21655 0.98231 0.95772 0.96490 0.90989 1.21457 0.97107 1.00396 0.94934 1.22121 0.96752 1.00478 0.97282 1.20824 0.92835 0.89542 0.90276 0.90527 1.44844 1.06270 1.25888 1.56943 1.19650 0.95204 0.99832 1.21996 0.89907 1.25567 0.96004 1.02340 1.02398 1.70272 1.02650 1.41010 1.46336 0.85285 0.76252 0.80114 0.78487 1.20586 1.22898 1.20431 1.20629 0.85132 0.90341 0.94822 0.92045 0.91809 0.91627 0.91537 0.91824 0.88985 0.88542 0.85275 0.84351 0.87540 0.87817 0.91804 0.88553 0.93574 0.89908 0.88742 0.93505 0.94951 0.97792 0.97032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.91 71.98 0.71 -0.44 16 2 C -0.11 -1.29 5.94 30.60 0.18 -1.10 16 3 C -0.09 -1.09 5.94 71.98 0.43 -0.66 16 4 S -0.26 -5.63 20.87 -56.49 -1.18 -6.81 16 5 C -0.11 -1.88 5.40 71.24 0.38 -1.49 16 6 C 0.54 14.38 7.93 87.66 0.70 15.07 16 7 O -0.57 -20.42 16.13 -3.04 -0.05 -20.47 16 8 N -0.61 -14.87 3.31 -807.06 -2.67 -17.55 16 9 C 0.11 2.07 6.22 86.66 0.54 2.61 16 10 C -0.10 -2.93 3.35 -9.73 -0.03 -2.96 16 11 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 12 C -0.08 -2.40 3.14 -9.90 -0.03 -2.43 16 13 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 14 C 0.11 3.01 6.34 86.55 0.55 3.55 16 15 C -0.10 -3.56 2.87 -10.56 -0.03 -3.59 16 16 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 17 C -0.10 -2.97 5.31 30.59 0.16 -2.81 16 18 C -0.13 -3.60 5.51 30.68 0.17 -3.43 16 19 C 0.17 5.79 3.20 44.95 0.14 5.93 16 20 H 0.08 2.46 7.99 -2.38 -0.02 2.44 16 21 N -0.62 -28.69 2.87 -670.47 -1.93 -30.62 16 22 C -0.24 -12.45 9.99 84.04 0.84 -11.61 16 23 H 0.08 4.09 7.79 -2.91 -0.02 4.07 16 24 C -0.07 -3.93 5.47 84.86 0.46 -3.46 16 25 N -0.95 -56.50 9.76 21.65 0.21 -56.29 16 26 Si 0.97 45.03 29.55 68.60 2.03 47.06 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 C 0.22 10.28 4.36 86.37 0.38 10.66 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.13 1.81 7.97 -2.39 -0.02 1.79 16 39 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.73 5.20 -2.38 -0.01 1.72 16 41 H 0.10 1.46 7.31 -2.39 -0.02 1.44 16 42 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 43 H 0.10 2.30 5.30 -2.39 -0.01 2.28 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.92 5.79 -2.39 -0.01 1.91 16 46 H 0.09 1.90 5.65 -2.39 -0.01 1.89 16 47 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 48 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 49 H 0.00 0.22 7.24 -2.39 -0.02 0.20 16 50 H 0.01 0.63 7.21 -2.39 -0.02 0.62 16 Total: -1.00 -71.60 384.21 2.88 -68.72 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.91 Total: 12.10 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.55 Total: 3.85 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.39 Total: -104.45 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.18 Total: -6.81 kcal Total: -71.60 2.88 -68.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565994998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.780 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds