Wall clock time and date at job start Tue Mar 31 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46871 * 2 1 4 4 S 1.81400 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.81399 * 103.00384 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47560 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99720 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00053 * 180.02562 * 6 5 4 9 9 C 1.49487 * 125.93939 * 180.02562 * 8 6 5 10 10 C 1.52838 * 103.09891 * 154.34935 * 9 8 6 11 11 H 1.08994 * 111.16564 * 284.80124 * 10 9 8 12 12 C 1.56104 * 97.91383 * 42.49029 * 10 9 8 13 13 H 1.09000 * 100.03256 * 60.04468 * 12 10 9 14 14 C 1.47950 * 103.96571 * 314.07234 * 12 10 9 15 15 C 1.49205 * 108.83540 * 168.36951 * 12 10 9 16 16 H 1.08998 * 114.52405 * 155.18503 * 15 12 10 17 17 C 1.55155 * 108.17106 * 26.88908 * 15 12 10 18 18 C 1.54109 * 108.68600 * 289.00948 * 17 15 12 19 19 C 1.51803 * 119.79075 * 153.01419 * 10 9 8 20 20 H 1.08997 * 112.84395 * 47.65710 * 19 10 9 21 21 C 1.54143 * 109.73904 * 281.61102 * 19 10 9 22 22 N 1.48665 * 106.45480 * 287.66340 * 21 19 10 23 23 C 1.36935 * 123.84649 * 214.61203 * 22 21 19 24 24 H 1.07995 * 120.00448 * 160.65949 * 23 22 21 25 25 C 1.38818 * 119.99816 * 340.65328 * 23 22 21 26 26 N 1.31618 * 119.99709 * 349.91056 * 25 23 22 27 27 Si 1.86798 * 119.99883 * 169.91052 * 25 23 22 28 28 H 1.48501 * 109.47321 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47031 * 120.00207 * 27 25 23 30 30 H 1.48503 * 109.46956 * 240.00051 * 27 25 23 31 31 H 1.09007 * 109.46812 * 60.00558 * 1 2 3 32 32 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47447 * 300.00107 * 1 2 3 34 34 H 1.08993 * 109.47070 * 239.99507 * 2 1 3 35 35 H 1.08999 * 109.46583 * 119.99273 * 2 1 3 36 36 H 1.09004 * 109.47180 * 59.99826 * 3 2 1 37 37 H 1.09003 * 109.47224 * 299.99754 * 3 2 1 38 38 H 1.09009 * 109.47062 * 59.99779 * 5 4 3 39 39 H 1.08998 * 109.47075 * 300.00594 * 5 4 3 40 40 H 1.09002 * 110.69321 * 35.94747 * 9 8 6 41 41 H 1.08999 * 110.69153 * 272.75310 * 9 8 6 42 42 H 1.09003 * 110.35524 * 272.51293 * 14 12 10 43 43 H 1.09008 * 110.56987 * 150.05813 * 14 12 10 44 44 H 1.08994 * 109.60391 * 169.24864 * 17 15 12 45 45 H 1.09000 * 109.60032 * 48.76791 * 17 15 12 46 46 H 1.08998 * 109.89818 * 152.84737 * 18 17 15 47 47 H 1.09006 * 109.89286 * 273.88292 * 18 17 15 48 48 H 1.09002 * 109.99130 * 168.45058 * 21 19 10 49 49 H 1.09011 * 110.17919 * 46.97697 * 21 19 10 50 50 H 0.97002 * 120.00030 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2621 3.2100 -0.0001 6 6 5.7594 3.3800 -0.0002 7 8 6.4804 2.4046 0.0007 8 7 6.2974 4.6157 -0.0003 9 6 7.7573 4.9370 -0.0010 10 6 7.8069 6.3221 -0.6452 11 1 7.6522 6.2609 -1.7224 12 6 6.5825 6.9471 0.0944 13 1 6.9192 6.8586 1.1273 14 6 5.5379 5.9036 0.0006 15 6 6.5726 8.4191 -0.1490 16 1 5.5914 8.8857 -0.0612 17 6 7.2808 8.6904 -1.5026 18 6 8.7895 8.4268 -1.3321 19 6 8.9442 7.2698 -0.3096 20 1 9.9228 6.7930 -0.3653 21 6 8.6896 7.9232 1.0631 22 7 7.5828 8.8963 0.8675 23 6 7.4898 10.0895 1.5330 24 1 6.8637 10.8781 1.1427 25 6 8.2003 10.2853 2.7094 26 7 8.8022 9.2697 3.2914 27 14 8.3020 11.9900 3.4663 28 1 7.5461 12.9515 2.6241 29 1 7.7179 11.9611 4.8313 30 1 9.7234 12.4126 3.5450 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.8427 3.6802 0.8895 39 1 3.8434 3.6791 -0.8905 40 1 8.3107 4.2137 -0.5999 41 1 8.1445 4.9719 1.0174 42 1 4.9736 6.0141 -0.9254 43 1 4.8701 5.9517 0.8608 44 1 7.1218 9.7277 -1.7971 45 1 6.8774 8.0252 -2.2661 46 1 9.2260 8.1378 -2.2881 47 1 9.2824 9.3232 -0.9554 48 1 9.5871 8.4408 1.4017 49 1 8.3977 7.1664 1.7915 50 1 9.2983 9.4064 4.1137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565994999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:08 Heat of formation + Delta-G solvation = 28.507879 kcal Electronic energy + Delta-G solvation = -28008.958380 eV Core-core repulsion = 24357.296665 eV Total energy + Delta-G solvation = -3651.661715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20081 -39.03993 -36.02959 -34.99649 -33.18202 -31.42278 -31.05443 -29.71059 -29.39277 -27.72486 -27.41428 -25.71437 -23.56564 -22.01314 -21.81719 -21.08052 -20.53426 -19.37224 -17.32458 -17.05311 -16.91916 -16.52094 -15.89571 -15.77085 -15.38796 -15.07461 -14.70115 -14.45717 -14.19802 -13.96872 -13.82176 -13.56372 -13.35359 -12.98535 -12.65478 -12.53700 -12.23614 -12.07140 -11.81911 -11.78242 -11.50740 -11.42669 -11.29442 -11.18345 -11.12982 -10.96860 -10.86819 -10.61582 -10.41531 -10.18062 -10.10712 -10.07674 -9.82862 -9.57510 -9.29987 -9.22168 -8.58511 -8.50751 -7.80224 -6.80882 -5.80859 -3.17896 1.26126 2.35835 2.61699 2.95918 3.34176 3.41438 3.43152 4.27095 4.39088 4.47087 4.52694 4.69201 4.78174 4.87777 4.90865 5.02304 5.06056 5.10370 5.26058 5.28006 5.33877 5.41250 5.45841 5.56697 5.62909 5.63849 5.69151 5.71388 5.76452 5.83421 5.86223 5.92731 6.03144 6.07859 6.20694 6.25659 6.29381 6.36416 6.41796 6.66908 6.71503 6.85917 7.02465 7.07809 7.32544 7.52022 7.55748 7.73618 8.12885 8.20619 9.10444 9.71116 10.38704 11.29596 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002485 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.434035 B =11264.315943 C =11861.071274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.106 4.106 4 S -0.189 6.189 5 C -0.120 4.120 6 C 0.545 3.455 7 O -0.529 6.529 8 N -0.619 5.619 9 C 0.120 3.880 10 C -0.098 4.098 11 H 0.078 0.922 12 C -0.162 4.162 13 H 0.092 0.908 14 C 0.134 3.866 15 C 0.189 3.811 16 H 0.080 0.920 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.108 4.108 20 H 0.074 0.926 21 C 0.184 3.816 22 N -0.600 5.600 23 C -0.233 4.233 24 H 0.071 0.929 25 C -0.004 4.004 26 N -0.914 5.914 27 Si 0.906 3.094 28 H -0.279 1.279 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.026 0.974 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 -11.504 -9.272 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.038 5.962 5 C -0.271 4.271 6 C 0.332 3.668 7 O -0.405 6.405 8 N -0.354 5.354 9 C -0.001 4.001 10 C -0.117 4.117 11 H 0.096 0.904 12 C -0.181 4.181 13 H 0.110 0.890 14 C 0.012 3.988 15 C 0.082 3.918 16 H 0.098 0.902 17 C -0.162 4.162 18 C -0.130 4.130 19 C -0.128 4.128 20 H 0.092 0.908 21 C 0.060 3.940 22 N -0.325 5.325 23 C -0.362 4.362 24 H 0.089 0.911 25 C -0.201 4.201 26 N -0.560 5.560 27 Si 0.736 3.264 28 H -0.204 1.204 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.044 0.956 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.725 -12.880 -9.038 19.043 hybrid contribution -0.814 2.102 0.625 2.339 sum -11.540 -10.778 -8.413 17.892 Atomic orbital electron populations 1.21768 0.94705 1.02106 1.02062 1.21222 0.95958 0.93928 1.03468 1.23573 0.95359 1.01667 1.04908 1.87478 1.04325 1.06368 1.98067 1.23461 0.97808 0.98852 1.07025 1.19193 0.88590 0.82092 0.76947 1.90740 1.62071 1.37659 1.50065 1.49689 1.08301 1.04786 1.72647 1.22088 0.79965 0.96606 1.01475 1.22280 0.97562 0.92627 0.99211 0.90418 1.21701 0.94902 0.95906 1.05628 0.88972 1.20752 0.94420 0.82504 1.01150 1.20700 0.93201 0.88134 0.89721 0.90216 1.22630 0.96006 0.99962 0.97623 1.21914 0.96180 0.98551 0.96378 1.22135 0.96224 0.94489 0.99998 0.90786 1.21251 0.92278 0.91168 0.89344 1.46033 1.20463 1.19078 1.46962 1.19141 1.25865 0.89424 1.01770 0.91100 1.24952 1.01604 0.97325 0.96259 1.69953 1.38090 1.28513 1.19425 0.86155 0.77392 0.83910 0.78920 1.20439 1.21861 1.21752 0.92534 0.92138 0.92488 0.90968 0.90929 0.90102 0.90152 0.87299 0.87390 0.90591 0.90695 0.91804 0.91047 0.92805 0.93696 0.94157 0.91162 0.90394 0.95602 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.78 5.94 -26.73 -0.16 -0.94 16 3 C -0.11 -0.87 5.94 37.16 0.22 -0.65 16 4 S -0.19 -2.30 20.87 -107.50 -2.24 -4.54 16 5 C -0.12 -1.38 5.65 36.00 0.20 -1.17 16 6 C 0.55 8.33 7.89 -10.99 -0.09 8.24 16 7 O -0.53 -10.00 16.17 5.55 0.09 -9.91 16 8 N -0.62 -9.12 3.43 -171.67 -0.59 -9.71 16 9 C 0.12 1.86 6.47 -2.46 -0.02 1.85 16 10 C -0.10 -1.50 2.50 -89.65 -0.22 -1.72 16 11 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 12 C -0.16 -2.60 2.49 -93.27 -0.23 -2.83 16 13 H 0.09 1.83 4.44 -51.93 -0.23 1.60 16 14 C 0.13 1.77 6.40 -4.81 -0.03 1.74 16 15 C 0.19 3.38 4.61 -66.09 -0.30 3.08 16 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.12 -1.97 5.60 -25.01 -0.14 -2.11 16 18 C -0.09 -1.55 5.50 -25.00 -0.14 -1.68 16 19 C -0.11 -1.86 3.87 -89.47 -0.35 -2.21 16 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.18 4.02 3.97 -2.25 -0.01 4.01 16 22 N -0.60 -13.55 2.24 -160.45 -0.36 -13.91 16 23 C -0.23 -5.97 10.11 -15.06 -0.15 -6.12 16 24 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 25 C 0.00 -0.11 5.27 -17.43 -0.09 -0.20 16 26 N -0.91 -25.51 10.85 55.49 0.60 -24.91 16 27 Si 0.91 21.18 29.57 -169.99 -5.03 16.16 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 38 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 39 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 41 H 0.07 1.26 7.85 -51.93 -0.41 0.86 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.35 7.82 -51.93 -0.41 0.94 16 48 H 0.08 1.96 6.77 -51.93 -0.35 1.61 16 49 H 0.03 0.63 6.50 -51.92 -0.34 0.29 16 50 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -29.93 390.34 -11.55 -41.48 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.77 Total: 0.63 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.14 Total: -1.16 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.35 Total: -48.53 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.24 Total: -4.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.93 -11.55 -41.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565994999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.991 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds