Wall clock time and date at job start Tue Mar 31 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46871 * 2 1 4 4 S 1.81400 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.81399 * 103.00384 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47560 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99720 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00053 * 180.02562 * 6 5 4 9 9 C 1.49487 * 125.93939 * 180.02562 * 8 6 5 10 10 C 1.52838 * 103.09891 * 154.34935 * 9 8 6 11 11 H 1.08994 * 111.16564 * 284.80124 * 10 9 8 12 12 C 1.56104 * 97.91383 * 42.49029 * 10 9 8 13 13 H 1.09000 * 100.03256 * 60.04468 * 12 10 9 14 14 C 1.47950 * 103.96571 * 314.07234 * 12 10 9 15 15 C 1.49205 * 108.83540 * 168.36951 * 12 10 9 16 16 H 1.08998 * 114.52405 * 155.18503 * 15 12 10 17 17 C 1.55155 * 108.17106 * 26.88908 * 15 12 10 18 18 C 1.54109 * 108.68600 * 289.00948 * 17 15 12 19 19 C 1.51803 * 119.79075 * 153.01419 * 10 9 8 20 20 H 1.08997 * 112.84395 * 47.65710 * 19 10 9 21 21 C 1.54143 * 109.73904 * 281.61102 * 19 10 9 22 22 N 1.48665 * 106.45480 * 287.66340 * 21 19 10 23 23 C 1.36935 * 123.84649 * 214.61203 * 22 21 19 24 24 H 1.07995 * 120.00448 * 160.65949 * 23 22 21 25 25 C 1.38818 * 119.99816 * 340.65328 * 23 22 21 26 26 N 1.31618 * 119.99709 * 349.91056 * 25 23 22 27 27 Si 1.86798 * 119.99883 * 169.91052 * 25 23 22 28 28 H 1.48501 * 109.47321 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47031 * 120.00207 * 27 25 23 30 30 H 1.48503 * 109.46956 * 240.00051 * 27 25 23 31 31 H 1.09007 * 109.46812 * 60.00558 * 1 2 3 32 32 H 1.09005 * 109.46982 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47447 * 300.00107 * 1 2 3 34 34 H 1.08993 * 109.47070 * 239.99507 * 2 1 3 35 35 H 1.08999 * 109.46583 * 119.99273 * 2 1 3 36 36 H 1.09004 * 109.47180 * 59.99826 * 3 2 1 37 37 H 1.09003 * 109.47224 * 299.99754 * 3 2 1 38 38 H 1.09009 * 109.47062 * 59.99779 * 5 4 3 39 39 H 1.08998 * 109.47075 * 300.00594 * 5 4 3 40 40 H 1.09002 * 110.69321 * 35.94747 * 9 8 6 41 41 H 1.08999 * 110.69153 * 272.75310 * 9 8 6 42 42 H 1.09003 * 110.35524 * 272.51293 * 14 12 10 43 43 H 1.09008 * 110.56987 * 150.05813 * 14 12 10 44 44 H 1.08994 * 109.60391 * 169.24864 * 17 15 12 45 45 H 1.09000 * 109.60032 * 48.76791 * 17 15 12 46 46 H 1.08998 * 109.89818 * 152.84737 * 18 17 15 47 47 H 1.09006 * 109.89286 * 273.88292 * 18 17 15 48 48 H 1.09002 * 109.99130 * 168.45058 * 21 19 10 49 49 H 1.09011 * 110.17919 * 46.97697 * 21 19 10 50 50 H 0.97002 * 120.00030 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2621 3.2100 -0.0001 6 6 5.7594 3.3800 -0.0002 7 8 6.4804 2.4046 0.0007 8 7 6.2974 4.6157 -0.0003 9 6 7.7573 4.9370 -0.0010 10 6 7.8069 6.3221 -0.6452 11 1 7.6522 6.2609 -1.7224 12 6 6.5825 6.9471 0.0944 13 1 6.9192 6.8586 1.1273 14 6 5.5379 5.9036 0.0006 15 6 6.5726 8.4191 -0.1490 16 1 5.5914 8.8857 -0.0612 17 6 7.2808 8.6904 -1.5026 18 6 8.7895 8.4268 -1.3321 19 6 8.9442 7.2698 -0.3096 20 1 9.9228 6.7930 -0.3653 21 6 8.6896 7.9232 1.0631 22 7 7.5828 8.8963 0.8675 23 6 7.4898 10.0895 1.5330 24 1 6.8637 10.8781 1.1427 25 6 8.2003 10.2853 2.7094 26 7 8.8022 9.2697 3.2914 27 14 8.3020 11.9900 3.4663 28 1 7.5461 12.9515 2.6241 29 1 7.7179 11.9611 4.8313 30 1 9.7234 12.4126 3.5450 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.8427 3.6802 0.8895 39 1 3.8434 3.6791 -0.8905 40 1 8.3107 4.2137 -0.5999 41 1 8.1445 4.9719 1.0174 42 1 4.9736 6.0141 -0.9254 43 1 4.8701 5.9517 0.8608 44 1 7.1218 9.7277 -1.7971 45 1 6.8774 8.0252 -2.2661 46 1 9.2260 8.1378 -2.2881 47 1 9.2824 9.3232 -0.9554 48 1 9.5871 8.4408 1.4017 49 1 8.3977 7.1664 1.7915 50 1 9.2983 9.4064 4.1137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565994999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:07 Heat of formation + Delta-G solvation = 13.246118 kcal Electronic energy + Delta-G solvation = -28009.620179 eV Core-core repulsion = 24357.296665 eV Total energy + Delta-G solvation = -3652.323514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.56912 -40.30730 -37.38637 -35.54549 -34.98112 -32.82806 -32.32616 -31.41559 -30.54839 -28.88522 -28.09243 -27.40312 -24.96405 -23.53941 -22.64345 -22.40618 -21.89645 -20.52202 -18.96526 -18.39769 -18.14678 -17.70753 -17.01844 -16.90643 -16.62846 -16.18072 -16.10202 -15.90256 -15.70112 -14.90665 -14.74276 -14.53583 -14.38467 -14.13010 -13.98435 -13.67973 -13.59049 -13.25634 -13.14139 -12.95215 -12.90086 -12.70452 -12.59953 -12.44244 -12.37253 -12.13448 -12.06388 -12.04655 -11.88478 -11.76541 -11.70690 -11.18489 -11.05891 -10.88326 -10.84673 -10.64302 -10.37195 -9.78046 -8.70875 -8.69194 -7.81479 -5.18766 0.42600 1.45328 1.47328 1.47618 1.56449 1.59507 1.82965 2.50487 3.14407 3.30677 3.42219 3.51130 3.71575 3.90457 3.92004 3.97525 4.01684 4.15018 4.20946 4.28901 4.32794 4.40727 4.40936 4.48913 4.53164 4.57799 4.62068 4.69470 4.73789 4.80291 4.86498 4.88247 4.91363 4.96833 5.03174 5.09223 5.16760 5.21162 5.28141 5.34050 5.39867 5.44151 5.54655 5.57375 5.70866 5.76990 5.82539 6.28469 6.37415 6.97135 7.12619 7.80029 8.46454 9.27016 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002485 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.434035 B =11264.315943 C =11861.071274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.086 4.086 4 S -0.260 6.260 5 C -0.104 4.104 6 C 0.540 3.460 7 O -0.572 6.572 8 N -0.618 5.618 9 C 0.120 3.880 10 C -0.083 4.083 11 H 0.105 0.895 12 C -0.144 4.144 13 H 0.047 0.953 14 C 0.139 3.861 15 C 0.184 3.816 16 H 0.089 0.911 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.101 4.101 20 H 0.083 0.917 21 C 0.197 3.803 22 N -0.617 5.617 23 C -0.229 4.229 24 H 0.076 0.924 25 C -0.064 4.064 26 N -0.947 5.947 27 Si 0.964 3.036 28 H -0.264 1.264 29 H -0.298 1.298 30 H -0.299 1.299 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.033 0.967 49 H -0.007 1.007 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -11.336 -12.070 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.234 4.234 4 S -0.034 6.034 5 C -0.254 4.254 6 C 0.328 3.672 7 O -0.452 6.452 8 N -0.353 5.353 9 C -0.001 4.001 10 C -0.102 4.102 11 H 0.124 0.876 12 C -0.164 4.164 13 H 0.065 0.935 14 C 0.018 3.982 15 C 0.080 3.920 16 H 0.107 0.893 17 C -0.153 4.153 18 C -0.127 4.127 19 C -0.121 4.121 20 H 0.101 0.899 21 C 0.072 3.928 22 N -0.343 5.343 23 C -0.359 4.359 24 H 0.094 0.906 25 C -0.258 4.258 26 N -0.596 5.596 27 Si 0.794 3.206 28 H -0.188 1.188 29 H -0.226 1.226 30 H -0.226 1.226 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.011 0.989 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.686 -12.690 -11.875 22.121 hybrid contribution 0.069 2.019 1.492 2.512 sum -13.616 -10.671 -10.383 20.176 Atomic orbital electron populations 1.21738 0.93085 1.02734 1.02622 1.21246 0.97147 0.93417 1.02836 1.23606 0.91274 1.02379 1.06176 1.87781 1.09058 1.08266 1.98286 1.23384 0.94670 0.98063 1.09280 1.19858 0.90168 0.81348 0.75799 1.90723 1.63516 1.39026 1.51968 1.49716 1.07860 1.05415 1.72269 1.21950 0.81113 0.96962 1.00121 1.22153 0.95980 0.91626 1.00393 0.87650 1.21504 0.96456 0.95666 1.02770 0.93482 1.20817 0.93422 0.80253 1.03706 1.20949 0.92801 0.89018 0.89246 0.89270 1.22535 0.94957 1.00946 0.96887 1.21880 0.96956 0.96654 0.97233 1.22003 0.97754 0.95364 0.97020 0.89862 1.20890 0.90375 0.90017 0.91471 1.46284 1.22270 1.18482 1.47245 1.19489 1.24344 0.90797 1.01262 0.90596 1.25645 1.02532 1.00195 0.97402 1.70150 1.39643 1.30184 1.19652 0.85225 0.76756 0.80802 0.77855 1.18811 1.22586 1.22622 0.91774 0.91572 0.92073 0.91482 0.91844 0.89053 0.88489 0.85503 0.84301 0.90331 0.93303 0.87757 0.90080 0.92815 0.90003 0.90908 0.94475 0.94871 0.98943 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.11 -1.37 5.94 30.59 0.18 -1.19 16 3 C -0.09 -1.18 5.94 71.98 0.43 -0.75 16 4 S -0.26 -6.00 20.87 -56.49 -1.18 -7.18 16 5 C -0.10 -2.06 5.65 71.23 0.40 -1.66 16 6 C 0.54 15.59 7.89 87.65 0.69 16.29 16 7 O -0.57 -21.61 16.17 -3.05 -0.05 -21.66 16 8 N -0.62 -16.95 3.43 -815.44 -2.80 -19.75 16 9 C 0.12 3.67 6.47 85.74 0.55 4.23 16 10 C -0.08 -2.35 2.50 -10.16 -0.03 -2.37 16 11 H 0.11 2.54 6.87 -2.39 -0.02 2.53 16 12 C -0.14 -4.35 2.49 -12.51 -0.03 -4.38 16 13 H 0.05 1.89 4.44 -2.39 -0.01 1.88 16 14 C 0.14 3.19 6.40 84.21 0.54 3.73 16 15 C 0.18 6.22 4.61 43.63 0.20 6.42 16 16 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 17 C -0.11 -3.25 5.60 31.71 0.18 -3.07 16 18 C -0.09 -2.80 5.50 31.72 0.17 -2.63 16 19 C -0.10 -3.44 3.87 -10.05 -0.04 -3.48 16 20 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.20 9.06 3.97 86.35 0.34 9.40 16 22 N -0.62 -28.24 2.24 -661.55 -1.48 -29.72 16 23 C -0.23 -11.90 10.11 84.04 0.85 -11.05 16 24 H 0.08 3.79 7.85 -2.91 -0.02 3.77 16 25 C -0.06 -3.53 5.27 84.86 0.45 -3.08 16 26 N -0.95 -55.90 10.85 21.65 0.23 -55.66 16 27 Si 0.96 44.74 29.57 68.60 2.03 46.77 16 28 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 41 H 0.05 1.73 7.85 -2.39 -0.02 1.71 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.80 7.17 -2.39 -0.02 1.78 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.40 7.82 -2.38 -0.02 1.39 16 48 H 0.03 1.79 6.77 -2.39 -0.02 1.77 16 49 H -0.01 -0.37 6.50 -2.38 -0.02 -0.39 16 50 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -70.40 390.34 3.27 -67.13 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.90 Total: 14.19 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.61 Total: 5.87 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.04 Total: -105.13 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.18 Total: -7.18 kcal Total: -70.40 3.27 -67.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565994999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.381 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds