Wall clock time and date at job start Tue Mar 31 2020 20:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 N 1.46896 * 109.47250 * 179.97438 * 4 3 2 6 6 C 1.46852 * 110.99629 * 45.79404 * 5 4 3 7 7 C 1.53035 * 109.52269 * 185.83604 * 6 5 4 8 8 C 1.53117 * 109.27900 * 300.82351 * 7 6 5 9 9 N 1.46506 * 109.57224 * 177.59034 * 8 7 6 10 10 C 1.46503 * 120.00033 * 120.28685 * 9 8 7 11 11 C 1.53003 * 109.47061 * 89.99329 * 10 9 8 12 12 C 1.53003 * 109.46847 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00052 * 300.27937 * 9 8 7 14 14 O 1.21277 * 119.99914 * 0.02562 * 13 9 8 15 15 C 1.50700 * 119.99797 * 180.02562 * 13 9 8 16 16 S 1.81002 * 109.47032 * 180.02562 * 15 13 9 17 17 C 1.76195 * 100.00229 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00258 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00363 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46804 * 89.99759 * 21 19 17 23 23 H 1.48502 * 109.47227 * 210.00001 * 21 19 17 24 24 H 1.48505 * 109.46552 * 329.99804 * 21 19 17 25 25 C 1.53111 * 109.16343 * 57.65433 * 8 7 6 26 26 C 1.46843 * 111.00114 * 169.99982 * 5 4 3 27 27 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 31 31 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 32 32 H 1.08994 * 109.46193 * 305.85391 * 6 5 4 33 33 H 1.09004 * 109.46076 * 65.82170 * 6 5 4 34 34 H 1.09005 * 109.50575 * 180.87840 * 7 6 5 35 35 H 1.09000 * 109.50231 * 60.76159 * 7 6 5 36 36 H 1.09001 * 109.52169 * 297.74239 * 8 7 6 37 37 H 1.08998 * 109.47042 * 209.99869 * 10 9 8 38 38 H 1.09006 * 109.46740 * 329.99580 * 10 9 8 39 39 H 1.08993 * 109.47188 * 300.00194 * 11 10 9 40 40 H 1.08995 * 109.46766 * 60.00830 * 11 10 9 41 41 H 1.08994 * 109.47363 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.47252 * 300.00537 * 12 11 10 43 43 H 1.09006 * 109.46745 * 60.00380 * 12 11 10 44 44 H 1.08990 * 109.47304 * 300.00262 * 15 13 9 45 45 H 1.09005 * 109.47155 * 60.00554 * 15 13 9 46 46 H 0.96996 * 120.00294 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.50805 * 182.40238 * 25 8 7 48 48 H 1.09004 * 109.51036 * 62.28465 * 25 8 7 49 49 H 1.08994 * 109.46605 * 294.18152 * 26 5 4 50 50 H 1.09003 * 109.45791 * 54.15918 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 7 4.6245 0.9343 -1.1005 6 6 5.1517 -0.4331 -1.0058 7 6 6.6745 -0.3851 -0.8616 8 6 7.2749 0.3305 -2.0748 9 7 8.7279 0.4309 -1.9160 10 6 9.6171 -0.1802 -2.9070 11 6 9.9246 0.8342 -4.0105 12 6 10.8537 0.1961 -5.0451 13 6 9.2465 1.0856 -0.8582 14 8 8.5104 1.5912 -0.0376 15 6 10.7411 1.1894 -0.6952 16 16 11.1206 2.1196 0.8104 17 6 12.8813 2.0889 0.7534 18 1 13.3867 1.5882 -0.0592 19 6 13.6190 2.7074 1.7533 20 7 13.0031 3.3172 2.7440 21 14 15.4858 2.6743 1.6932 22 1 15.9778 3.8571 0.9422 23 1 16.0262 2.7060 3.0761 24 1 15.9371 1.4334 1.0137 25 6 6.6733 1.7346 -2.1786 26 6 5.1505 1.6253 -2.2846 27 1 -1.0502 -0.0001 0.0004 28 1 3.0092 0.3479 0.9672 29 1 3.0098 -1.0104 -0.1831 30 1 2.7923 0.5859 -2.0681 31 1 2.7917 1.9442 -0.9178 32 1 4.7201 -0.9293 -0.1366 33 1 4.8895 -0.9867 -1.9074 34 1 7.0671 -1.4006 -0.8070 35 1 6.9372 0.1565 0.0471 36 1 7.0455 -0.2320 -2.9799 37 1 10.5456 -0.4840 -2.4237 38 1 9.1309 -1.0537 -3.3416 39 1 8.9961 1.1379 -4.4938 40 1 10.4107 1.7075 -3.5759 41 1 11.0725 0.9185 -5.8315 42 1 11.7822 -0.1074 -4.5615 43 1 10.3680 -0.6776 -5.4798 44 1 11.1688 0.1896 -0.6217 45 1 11.1658 1.7038 -1.5573 46 1 13.5186 3.7497 3.4426 47 1 7.0649 2.2339 -3.0650 48 1 6.9358 2.3097 -1.2906 49 1 4.8884 1.0621 -3.1802 50 1 4.7180 2.6241 -2.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566696668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:11 Heat of formation + Delta-G solvation = 14.790784 kcal Electronic energy + Delta-G solvation = -27374.446207 eV Core-core repulsion = 23722.189674 eV Total energy + Delta-G solvation = -3652.256533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31385 -38.58772 -36.11760 -35.14803 -33.36476 -32.40596 -31.83279 -31.00493 -29.67457 -28.38967 -26.14059 -25.49309 -24.55730 -23.23211 -22.17512 -21.69412 -20.21479 -18.83871 -18.34106 -17.52801 -16.73455 -16.24512 -15.79262 -15.46655 -15.19570 -14.84006 -14.78575 -14.66115 -14.18176 -13.99699 -13.83624 -13.63222 -13.55109 -13.20739 -12.90799 -12.59808 -12.56561 -12.27073 -12.21070 -12.04990 -11.92769 -11.85616 -11.48985 -11.32208 -11.05993 -11.01613 -10.99966 -10.86565 -10.74070 -10.67154 -10.48227 -10.38640 -10.18336 -9.77939 -9.06124 -9.04325 -8.42178 -8.41379 -8.18304 -6.46334 -6.19353 -3.89197 2.51965 2.58548 2.96457 3.12873 3.23277 3.27042 3.31233 3.62518 3.65412 4.22638 4.23379 4.63567 4.69156 4.78915 4.83613 4.86254 4.92577 5.00423 5.11505 5.15643 5.19321 5.20956 5.26924 5.29896 5.33020 5.36130 5.46532 5.52170 5.57802 5.65191 5.66396 5.70241 5.70554 5.74377 5.78151 5.89295 5.91781 5.98571 6.02540 6.04460 6.12398 6.26413 6.43288 6.46495 6.88380 6.93698 6.95826 7.35512 7.61438 7.66012 8.37363 8.66975 9.25959 10.87978 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002599 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.729189 B =10772.385776 C =12402.728939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C -0.020 4.020 4 C 0.063 3.937 5 N -0.534 5.534 6 C 0.055 3.945 7 C -0.137 4.137 8 C 0.158 3.842 9 N -0.619 5.619 10 C 0.111 3.889 11 C -0.144 4.144 12 C -0.149 4.149 13 C 0.535 3.465 14 O -0.504 6.504 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.917 3.083 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.136 4.136 26 C 0.066 3.934 27 H 0.216 0.784 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.268 0.732 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.029 0.971 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 -9.340 -14.658 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.182 4.182 3 C -0.057 4.057 4 C -0.064 4.064 5 N -0.258 5.258 6 C -0.073 4.073 7 C -0.176 4.176 8 C 0.054 3.946 9 N -0.353 5.353 10 C -0.012 4.012 11 C -0.183 4.183 12 C -0.207 4.207 13 C 0.322 3.678 14 O -0.378 6.378 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.682 4.682 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.743 3.257 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.174 4.174 26 C -0.062 4.062 27 H 0.233 0.767 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.120 0.880 49 H 0.047 0.953 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.099 -8.235 -12.853 23.676 hybrid contribution 1.641 -1.080 -1.869 2.711 sum -16.457 -9.316 -14.721 23.965 Atomic orbital electron populations 1.24896 0.95952 1.01155 1.01120 1.23093 0.94469 1.00308 1.00303 1.18933 0.84445 1.00995 1.01281 1.22013 0.87545 1.00209 0.96669 1.61953 1.06080 1.17052 1.40753 1.22175 0.95596 0.89025 1.00505 1.22066 0.93531 1.00652 1.01304 1.20956 0.79474 0.96392 0.97735 1.48086 1.05659 1.56604 1.24981 1.21640 0.94794 0.95263 0.89536 1.21990 1.00077 0.99600 0.96630 1.21701 0.99681 1.00615 0.98742 1.20249 0.90315 0.77070 0.80124 1.90658 1.60897 1.44867 1.41369 1.23600 0.94197 1.05358 1.07018 1.85379 1.06359 1.68605 1.22986 1.22856 0.91254 1.41301 1.12838 0.91053 1.24981 0.99408 0.94629 0.94565 1.70017 1.35941 1.33251 1.11042 0.86196 0.83314 0.78584 0.77573 1.20305 1.20769 1.19726 1.22054 0.93425 0.97683 1.04258 1.21998 0.95576 0.98778 0.89886 0.76689 0.88255 0.89225 0.94725 0.90174 0.89946 0.95299 0.91762 0.87966 0.90772 0.89997 0.90888 0.91903 0.91211 0.92553 0.92322 0.92860 0.89584 0.89476 0.92225 0.91759 0.88025 0.95290 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.80 19.25 29.55 0.57 -1.24 16 2 C -0.18 -1.74 13.34 -37.12 -0.50 -2.23 16 3 C -0.02 -0.18 4.95 -29.51 -0.15 -0.32 16 4 C 0.06 0.59 5.23 -3.83 -0.02 0.57 16 5 N -0.53 -5.88 4.81 -234.67 -1.13 -7.01 16 6 C 0.06 0.56 4.85 -3.83 -0.02 0.55 16 7 C -0.14 -1.71 5.33 -26.65 -0.14 -1.85 16 8 C 0.16 1.91 2.61 -67.81 -0.18 1.73 16 9 N -0.62 -8.48 2.43 -165.96 -0.40 -8.88 16 10 C 0.11 1.20 5.18 -4.04 -0.02 1.18 16 11 C -0.14 -1.47 6.26 -26.73 -0.17 -1.64 16 12 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 13 C 0.53 9.83 7.11 -10.99 -0.08 9.75 16 14 O -0.50 -10.90 12.03 5.56 0.07 -10.84 16 15 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 C -0.14 -1.71 5.33 -26.65 -0.14 -1.86 16 26 C 0.07 0.70 5.42 -3.84 -0.02 0.68 16 27 H 0.22 1.07 7.80 -54.08 -0.42 0.65 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.70 6.21 -51.93 -0.32 0.38 16 30 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.77 5.81 -51.93 -0.30 0.47 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.68 6.10 -51.93 -0.32 1.36 16 36 H 0.07 0.74 7.80 -51.93 -0.40 0.34 16 37 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 38 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.85 7.22 -51.93 -0.37 0.48 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 45 H 0.09 1.66 7.18 -51.91 -0.37 1.29 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.69 6.12 -51.93 -0.32 1.37 16 49 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -33.33 408.17 -10.52 -43.84 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.58 Total: 0.97 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.12 Total: -11.36 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.80 Total: -41.33 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.33 -10.52 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.632 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds