Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 N 1.46896 * 109.47250 * 179.97438 * 4 3 2 6 6 C 1.46852 * 110.99629 * 45.79404 * 5 4 3 7 7 C 1.53035 * 109.52269 * 185.83604 * 6 5 4 8 8 C 1.53117 * 109.27900 * 300.82351 * 7 6 5 9 9 N 1.46506 * 109.57224 * 177.59034 * 8 7 6 10 10 C 1.46503 * 120.00033 * 120.28685 * 9 8 7 11 11 C 1.53003 * 109.47061 * 89.99329 * 10 9 8 12 12 C 1.53003 * 109.46847 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00052 * 300.27937 * 9 8 7 14 14 O 1.21277 * 119.99914 * 0.02562 * 13 9 8 15 15 C 1.50700 * 119.99797 * 180.02562 * 13 9 8 16 16 S 1.81002 * 109.47032 * 180.02562 * 15 13 9 17 17 C 1.76195 * 100.00229 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00258 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00363 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46804 * 89.99759 * 21 19 17 23 23 H 1.48502 * 109.47227 * 210.00001 * 21 19 17 24 24 H 1.48505 * 109.46552 * 329.99804 * 21 19 17 25 25 C 1.53111 * 109.16343 * 57.65433 * 8 7 6 26 26 C 1.46843 * 111.00114 * 169.99982 * 5 4 3 27 27 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 29 29 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 31 31 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 32 32 H 1.08994 * 109.46193 * 305.85391 * 6 5 4 33 33 H 1.09004 * 109.46076 * 65.82170 * 6 5 4 34 34 H 1.09005 * 109.50575 * 180.87840 * 7 6 5 35 35 H 1.09000 * 109.50231 * 60.76159 * 7 6 5 36 36 H 1.09001 * 109.52169 * 297.74239 * 8 7 6 37 37 H 1.08998 * 109.47042 * 209.99869 * 10 9 8 38 38 H 1.09006 * 109.46740 * 329.99580 * 10 9 8 39 39 H 1.08993 * 109.47188 * 300.00194 * 11 10 9 40 40 H 1.08995 * 109.46766 * 60.00830 * 11 10 9 41 41 H 1.08994 * 109.47363 * 179.97438 * 12 11 10 42 42 H 1.08998 * 109.47252 * 300.00537 * 12 11 10 43 43 H 1.09006 * 109.46745 * 60.00380 * 12 11 10 44 44 H 1.08990 * 109.47304 * 300.00262 * 15 13 9 45 45 H 1.09005 * 109.47155 * 60.00554 * 15 13 9 46 46 H 0.96996 * 120.00294 * 180.02562 * 20 19 17 47 47 H 1.09004 * 109.50805 * 182.40238 * 25 8 7 48 48 H 1.09004 * 109.51036 * 62.28465 * 25 8 7 49 49 H 1.08994 * 109.46605 * 294.18152 * 26 5 4 50 50 H 1.09003 * 109.45791 * 54.15918 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 7 4.6245 0.9343 -1.1005 6 6 5.1517 -0.4331 -1.0058 7 6 6.6745 -0.3851 -0.8616 8 6 7.2749 0.3305 -2.0748 9 7 8.7279 0.4309 -1.9160 10 6 9.6171 -0.1802 -2.9070 11 6 9.9246 0.8342 -4.0105 12 6 10.8537 0.1961 -5.0451 13 6 9.2465 1.0856 -0.8582 14 8 8.5104 1.5912 -0.0376 15 6 10.7411 1.1894 -0.6952 16 16 11.1206 2.1196 0.8104 17 6 12.8813 2.0889 0.7534 18 1 13.3867 1.5882 -0.0592 19 6 13.6190 2.7074 1.7533 20 7 13.0031 3.3172 2.7440 21 14 15.4858 2.6743 1.6932 22 1 15.9778 3.8571 0.9422 23 1 16.0262 2.7060 3.0761 24 1 15.9371 1.4334 1.0137 25 6 6.6733 1.7346 -2.1786 26 6 5.1505 1.6253 -2.2846 27 1 -1.0502 -0.0001 0.0004 28 1 3.0092 0.3479 0.9672 29 1 3.0098 -1.0104 -0.1831 30 1 2.7923 0.5859 -2.0681 31 1 2.7917 1.9442 -0.9178 32 1 4.7201 -0.9293 -0.1366 33 1 4.8895 -0.9867 -1.9074 34 1 7.0671 -1.4006 -0.8070 35 1 6.9372 0.1565 0.0471 36 1 7.0455 -0.2320 -2.9799 37 1 10.5456 -0.4840 -2.4237 38 1 9.1309 -1.0537 -3.3416 39 1 8.9961 1.1379 -4.4938 40 1 10.4107 1.7075 -3.5759 41 1 11.0725 0.9185 -5.8315 42 1 11.7822 -0.1074 -4.5615 43 1 10.3680 -0.6776 -5.4798 44 1 11.1688 0.1896 -0.6217 45 1 11.1658 1.7038 -1.5573 46 1 13.5186 3.7497 3.4426 47 1 7.0649 2.2339 -3.0650 48 1 6.9358 2.3097 -1.2906 49 1 4.8884 1.0621 -3.1802 50 1 4.7180 2.6241 -2.3441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566696668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -5.082774 kcal Electronic energy + Delta-G solvation = -27375.307989 eV Core-core repulsion = 23722.189674 eV Total energy + Delta-G solvation = -3653.118315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47476 -39.59386 -37.30600 -35.93660 -34.58322 -34.18388 -32.81188 -31.90894 -30.86469 -29.49039 -27.66836 -27.00916 -25.51757 -24.15635 -23.11021 -22.50828 -21.14637 -20.35950 -19.30739 -18.97941 -17.87257 -17.45227 -16.87934 -16.75437 -16.53521 -16.11997 -15.84914 -15.73704 -15.55633 -15.02225 -14.93815 -14.70868 -14.55569 -14.35112 -14.22478 -13.81193 -13.65623 -13.29215 -13.17852 -13.05190 -12.95386 -12.89863 -12.87934 -12.68174 -12.59236 -12.34723 -12.21424 -11.97652 -11.73087 -11.71499 -11.55944 -11.40228 -11.13739 -11.08536 -10.92246 -10.48557 -10.24199 -9.57696 -9.19607 -8.65092 -8.34113 -6.11646 1.27111 1.41622 1.46523 1.56766 1.67898 1.84570 1.91478 2.14300 2.28421 2.88876 2.99614 3.26944 3.58302 3.65059 3.84071 3.93116 3.99080 4.06083 4.10326 4.14880 4.20511 4.28702 4.34272 4.40914 4.46963 4.48971 4.49477 4.51128 4.55580 4.60138 4.73197 4.77266 4.87549 4.93821 4.95381 4.99970 5.03905 5.06236 5.19131 5.21046 5.26122 5.38262 5.38495 5.41549 5.47321 5.82334 6.13386 6.16394 6.19908 6.42082 6.70397 7.06914 7.28354 8.75002 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002599 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.729189 B =10772.385776 C =12402.728939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.218 4.218 3 C -0.016 4.016 4 C 0.071 3.929 5 N -0.558 5.558 6 C 0.060 3.940 7 C -0.134 4.134 8 C 0.156 3.844 9 N -0.604 5.604 10 C 0.104 3.896 11 C -0.139 4.139 12 C -0.145 4.145 13 C 0.533 3.467 14 O -0.545 6.545 15 C -0.124 4.124 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.258 1.258 25 C -0.131 4.131 26 C 0.071 3.929 27 H 0.245 0.755 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.271 0.729 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 -11.486 -17.641 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.219 4.219 3 C -0.052 4.052 4 C -0.056 4.056 5 N -0.283 5.283 6 C -0.067 4.067 7 C -0.173 4.173 8 C 0.054 3.946 9 N -0.337 5.337 10 C -0.018 4.018 11 C -0.178 4.178 12 C -0.203 4.203 13 C 0.320 3.680 14 O -0.422 6.422 15 C -0.275 4.275 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.098 0.902 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.170 4.170 26 C -0.057 4.057 27 H 0.261 0.739 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.446 -10.408 -15.884 26.474 hybrid contribution 1.624 -0.443 -1.006 1.961 sum -16.822 -10.851 -16.890 26.192 Atomic orbital electron populations 1.25706 0.96854 0.99808 0.99659 1.23436 0.95155 1.01621 1.01678 1.18861 0.84483 1.01372 1.00530 1.21934 0.86392 0.99992 0.97325 1.61882 1.07209 1.17771 1.41472 1.22135 0.93731 0.88962 1.01911 1.21982 0.95509 1.00371 0.99408 1.21191 0.77906 0.96469 0.99049 1.48062 1.07056 1.54787 1.23765 1.21947 0.94489 0.96450 0.88921 1.21926 1.00698 0.98461 0.96718 1.21672 0.99148 1.01321 0.98174 1.19966 0.89157 0.77682 0.81174 1.90667 1.61292 1.46909 1.43306 1.23415 0.96247 1.04673 1.03181 1.85543 1.07354 1.70877 1.28322 1.23178 0.91347 1.41470 1.13297 0.90189 1.26121 1.05294 0.93864 0.93893 1.70185 1.38241 1.34300 1.11998 0.84978 0.75953 0.79302 0.77903 1.19318 1.20239 1.18165 1.21948 0.95325 0.97494 1.02238 1.21939 0.93785 0.99304 0.90683 0.73867 0.89470 0.88199 0.93592 0.90952 0.89415 0.92856 0.90741 0.92606 0.86871 0.90520 0.87252 0.90948 0.93955 0.92280 0.92837 0.90836 0.88169 0.88337 0.92026 0.91045 0.92747 0.92810 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 19.25 74.32 1.43 -1.65 16 2 C -0.22 -3.98 13.34 31.13 0.42 -3.56 16 3 C -0.02 -0.27 4.95 28.79 0.14 -0.13 16 4 C 0.07 1.25 5.23 86.30 0.45 1.70 16 5 N -0.56 -11.91 4.81 -896.37 -4.31 -16.21 16 6 C 0.06 1.14 4.85 86.32 0.42 1.56 16 7 C -0.13 -3.26 5.33 30.65 0.16 -3.09 16 8 C 0.16 3.50 2.61 45.07 0.12 3.62 16 9 N -0.60 -15.91 2.43 -797.38 -1.94 -17.85 16 10 C 0.10 1.97 5.18 86.38 0.45 2.42 16 11 C -0.14 -2.52 6.26 30.60 0.19 -2.33 16 12 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 13 C 0.53 20.13 7.11 87.66 0.62 20.76 16 14 O -0.54 -25.08 12.03 -3.02 -0.04 -25.12 16 15 C -0.12 -5.12 4.71 71.24 0.34 -4.78 16 16 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 17 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 18 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 21 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 25 C -0.13 -3.27 5.33 30.64 0.16 -3.11 16 26 C 0.07 1.40 5.42 86.33 0.47 1.87 16 27 H 0.24 1.78 7.80 -4.41 -0.03 1.75 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.45 6.21 -2.39 -0.01 1.43 16 30 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.55 5.81 -2.39 -0.01 1.53 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.06 1.93 6.10 -2.39 -0.01 1.91 16 36 H 0.11 1.75 7.80 -2.39 -0.02 1.73 16 37 H 0.08 1.57 6.44 -2.39 -0.02 1.55 16 38 H 0.11 1.37 7.92 -2.38 -0.02 1.35 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 1.00 7.22 -2.39 -0.02 0.98 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.10 3.81 7.40 -2.40 -0.02 3.79 16 45 H 0.10 3.80 7.18 -2.39 -0.02 3.79 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.05 1.92 6.12 -2.38 -0.01 1.90 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 Total: -1.00 -77.34 408.17 2.96 -74.38 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.90 Total: 22.39 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 7.19 Total: -17.80 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -5.96 Total: -90.42 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -77.34 2.96 -74.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.292 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds