Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47340 * 2 1 4 4 C 1.50701 * 109.46969 * 120.00248 * 2 1 3 5 5 O 1.21284 * 119.99631 * 119.99999 * 4 2 1 6 6 N 1.34771 * 119.99994 * 300.00042 * 4 2 1 7 7 C 1.46501 * 119.99845 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47199 * 179.97438 * 7 6 4 9 9 O 1.42890 * 109.47062 * 64.99973 * 8 7 6 10 10 C 1.42901 * 114.00190 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47113 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.47271 * 65.00216 * 11 10 9 13 13 C 1.46497 * 119.99861 * 269.99791 * 12 11 10 14 14 C 1.36932 * 120.00177 * 89.99792 * 12 11 10 15 15 H 1.07997 * 120.00197 * 22.70642 * 14 12 11 16 16 C 1.38817 * 120.00019 * 202.70804 * 14 12 11 17 17 N 1.31618 * 120.00007 * 11.50392 * 16 14 12 18 18 Si 1.86799 * 120.00155 * 191.50635 * 16 14 12 19 19 H 1.48500 * 109.47146 * 89.99814 * 18 16 14 20 20 H 1.48494 * 109.47158 * 209.99908 * 18 16 14 21 21 H 1.48502 * 109.47056 * 330.00199 * 18 16 14 22 22 C 1.50702 * 109.47130 * 240.00407 * 2 1 3 23 23 C 1.38215 * 120.01320 * 300.00332 * 22 2 1 24 24 C 1.38224 * 120.02768 * 179.97438 * 23 22 2 25 25 C 1.38267 * 120.05037 * 359.97438 * 24 23 22 26 26 C 1.38176 * 120.02433 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01393 * 119.97986 * 22 2 1 28 28 F 1.35096 * 120.02315 * 0.04454 * 27 22 2 29 29 H 1.09000 * 109.47363 * 299.99772 * 1 2 3 30 30 H 1.09006 * 109.47220 * 59.99675 * 1 2 3 31 31 H 1.08998 * 109.47524 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00188 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.47334 * 300.00191 * 7 6 4 34 34 H 1.09005 * 109.46652 * 59.99949 * 7 6 4 35 35 H 1.09000 * 109.46901 * 185.00233 * 8 7 6 36 36 H 1.09008 * 109.46993 * 304.99849 * 8 7 6 37 37 H 1.09003 * 109.46934 * 299.99918 * 10 9 8 38 38 H 1.08995 * 109.46998 * 59.99838 * 10 9 8 39 39 H 1.09005 * 109.46692 * 185.00025 * 11 10 9 40 40 H 1.08995 * 109.47338 * 304.99845 * 11 10 9 41 41 H 1.09001 * 109.47294 * 93.91751 * 13 12 11 42 42 H 1.08997 * 109.47705 * 213.92010 * 13 12 11 43 43 H 1.09010 * 109.46969 * 333.91658 * 13 12 11 44 44 H 0.96993 * 120.00272 * 179.97438 * 17 16 14 45 45 H 1.07998 * 119.98523 * 359.97438 * 23 22 2 46 46 H 1.08003 * 119.97631 * 179.97438 * 24 23 22 47 47 H 1.07997 * 119.98532 * 179.72522 * 25 24 23 48 48 H 1.08005 * 120.01007 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1945 -0.9411 3.6507 8 6 1.6851 -0.2195 4.9000 9 8 0.2610 -0.3192 4.9602 10 6 -0.3194 0.3259 6.0955 11 6 -1.8394 0.1555 6.0573 12 7 -2.1755 -1.2629 6.2038 13 6 -2.2962 -2.1134 5.0170 14 6 -2.3770 -1.7937 7.4498 15 1 -2.6523 -1.1507 8.2727 16 6 -2.2274 -3.1584 7.6554 17 7 -1.6775 -3.9079 6.7237 18 14 -2.8067 -3.9311 9.2544 19 1 -4.2216 -4.3592 9.1132 20 1 -1.9616 -5.1110 9.5686 21 1 -2.6975 -2.9374 10.3525 22 6 2.0323 -0.7103 -1.2305 23 6 1.6985 -2.0335 -1.4496 24 6 2.1587 -2.6852 -2.5785 25 6 2.9529 -2.0142 -3.4899 26 6 3.2878 -0.6913 -3.2730 27 6 2.8279 -0.0376 -2.1422 28 9 3.1551 1.2556 -1.9288 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1487 0.5383 2.5436 33 1 1.8308 -1.9686 3.6504 34 1 3.2846 -0.9415 3.6507 35 1 2.1195 -0.6794 5.7876 36 1 1.9744 0.8306 4.8563 37 1 0.0733 -0.1223 7.0083 38 1 -0.0718 1.3872 6.0763 39 1 -2.2890 0.7216 6.8731 40 1 -2.2225 0.5233 5.1055 41 1 -1.3442 -2.6091 4.8270 42 1 -3.0692 -2.8633 5.1844 43 1 -2.5649 -1.5004 4.1566 44 1 -1.5726 -4.8614 6.8674 45 1 1.0779 -2.5585 -0.7386 46 1 1.8977 -3.7193 -2.7486 47 1 3.3155 -2.5256 -4.3693 48 1 3.9079 -0.1673 -3.9853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571345058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = -82.594463 kcal Electronic energy + Delta-G solvation = -29364.495871 eV Core-core repulsion = 25141.803221 eV Total energy + Delta-G solvation = -4222.692650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.11334 -40.28858 -38.77413 -37.61436 -35.44316 -34.47645 -34.34987 -31.47619 -30.72953 -30.08229 -29.05647 -27.74462 -25.70921 -25.04429 -23.19013 -22.98391 -22.66609 -21.66907 -20.35544 -20.03069 -17.87807 -17.32661 -16.88527 -16.61952 -16.28479 -16.07641 -15.76974 -15.69906 -15.13239 -14.96326 -14.62029 -14.29223 -14.01471 -13.91261 -13.76247 -13.35447 -13.31892 -13.17395 -12.90694 -12.54224 -12.41383 -12.22443 -12.14793 -12.09278 -11.56124 -11.40078 -11.32878 -11.10983 -10.91026 -10.84275 -10.77608 -10.50911 -10.07123 -9.91190 -9.82233 -9.74781 -9.12822 -9.02633 -8.98423 -8.83384 -8.48481 -6.67237 -5.65376 -3.11866 0.94479 1.05220 2.65773 3.13714 3.39899 3.45941 3.47435 3.50840 4.04619 4.15225 4.22395 4.48714 4.54108 4.69240 4.83432 4.93977 4.96147 5.08860 5.17085 5.18628 5.29452 5.45362 5.47765 5.56561 5.59049 5.67197 5.69056 5.74054 5.85960 5.88455 5.98038 6.00474 6.10364 6.17716 6.19577 6.22644 6.25033 6.48064 6.54730 6.69507 6.76255 6.94731 7.51457 7.53925 7.77746 7.83321 7.97690 8.25091 8.46298 9.30787 9.94423 10.44797 11.38623 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.002282 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.300471 B =12265.478215 C =12848.112157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.106 0.894 4 C 0.518 3.482 5 O -0.536 6.536 6 N -0.716 5.716 7 C 0.125 3.875 8 C 0.051 3.949 9 O -0.366 6.366 10 C 0.042 3.958 11 C 0.153 3.847 12 N -0.596 5.596 13 C 0.175 3.825 14 C -0.257 4.257 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.097 4.097 23 C -0.055 4.055 24 C -0.130 4.130 25 C -0.093 4.093 26 C -0.159 4.159 27 C 0.101 3.899 28 F -0.141 7.141 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.037 0.963 43 H -0.007 1.007 44 H 0.251 0.749 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.638 9.900 -18.405 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.124 0.876 4 C 0.303 3.697 5 O -0.412 6.412 6 N -0.368 5.368 7 C 0.001 3.999 8 C -0.027 4.027 9 O -0.285 6.285 10 C -0.037 4.037 11 C 0.025 3.975 12 N -0.319 5.319 13 C 0.031 3.969 14 C -0.387 4.387 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.098 4.098 23 C -0.073 4.073 24 C -0.149 4.149 25 C -0.111 4.111 26 C -0.177 4.177 27 C 0.082 3.918 28 F -0.119 7.119 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.061 0.939 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.057 8.933 -18.588 22.524 hybrid contribution -0.067 0.223 1.315 1.335 sum 8.991 9.156 -17.273 21.518 Atomic orbital electron populations 1.21807 0.91149 1.03647 1.03215 1.20214 0.98367 1.00427 0.90480 0.87557 1.20304 0.80360 0.84638 0.84376 1.90720 1.37833 1.26010 1.86674 1.45870 1.53441 1.32187 1.05326 1.21402 0.98255 0.97768 0.82425 1.22602 0.84591 0.98447 0.97076 1.88005 1.17102 1.77556 1.45861 1.23519 0.98690 0.93065 0.88434 1.20890 0.89860 0.87913 0.98868 1.43879 1.80271 1.04076 1.03638 1.20685 0.99987 0.91644 0.84631 1.19199 1.40445 0.91565 0.87489 0.91584 1.25038 0.99639 0.97415 0.97548 1.70091 1.45992 1.05137 1.33459 0.86296 0.78188 0.78883 0.83378 1.21559 1.21820 1.20627 1.19364 0.99724 0.95325 0.95425 1.20904 0.97582 0.92562 0.96291 1.21216 0.98670 1.00467 0.94501 1.21002 0.97224 0.93486 0.99373 1.21052 1.03198 0.96077 0.97419 1.17504 0.99017 0.78970 0.96290 1.91465 1.91076 1.34530 1.94846 0.91009 0.91263 0.91370 0.76219 0.90068 0.90617 0.92082 0.93842 0.93326 0.95738 0.92400 0.93857 0.94981 0.94449 0.98895 0.93886 0.85006 0.85263 0.85168 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.90 37.16 0.33 -0.98 16 2 C -0.07 -0.80 2.89 -92.92 -0.27 -1.07 16 3 H 0.11 1.03 7.13 -51.93 -0.37 0.66 16 4 C 0.52 7.12 7.02 -10.99 -0.08 7.04 16 5 O -0.54 -9.25 15.11 5.55 0.08 -9.16 16 6 N -0.72 -9.15 5.40 -60.29 -0.33 -9.48 16 7 C 0.12 1.77 6.06 -4.04 -0.02 1.74 16 8 C 0.05 0.72 6.07 37.16 0.23 0.95 16 9 O -0.37 -6.68 9.84 -35.23 -0.35 -7.03 16 10 C 0.04 0.77 6.28 37.16 0.23 1.00 16 11 C 0.15 3.07 6.11 -4.04 -0.02 3.05 16 12 N -0.60 -15.07 2.89 -181.12 -0.52 -15.60 16 13 C 0.18 4.46 8.61 59.85 0.52 4.97 16 14 C -0.26 -7.06 9.67 -15.06 -0.15 -7.21 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 17 N -0.90 -26.63 10.62 55.49 0.59 -26.04 16 18 Si 0.90 21.96 29.57 -169.99 -5.03 16.93 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.10 -1.13 4.40 -104.55 -0.46 -1.59 16 23 C -0.06 -0.63 7.93 -39.59 -0.31 -0.94 16 24 C -0.13 -1.24 10.04 -39.58 -0.40 -1.64 16 25 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 26 C -0.16 -1.49 10.03 -39.52 -0.40 -1.89 16 27 C 0.10 1.14 7.25 -39.42 -0.29 0.85 16 28 F -0.14 -1.61 16.19 2.25 0.04 -1.57 16 29 H 0.07 0.63 7.56 -51.93 -0.39 0.23 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.69 7.39 -51.93 -0.38 0.31 16 32 H 0.40 4.38 7.89 -40.82 -0.32 4.06 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 40 H 0.04 0.80 7.86 -51.93 -0.41 0.40 16 41 H 0.03 0.89 7.43 -51.93 -0.39 0.51 16 42 H 0.04 1.02 7.20 -51.93 -0.37 0.65 16 43 H -0.01 -0.17 7.85 -51.92 -0.41 -0.58 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.13 1.54 7.52 -52.49 -0.39 1.15 16 46 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 48 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -33.37 400.55 -8.68 -42.05 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.63 Total: 0.78 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.58 Total: 3.08 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.26 Total: -51.11 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.26 Total: -16.19 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.37 -8.68 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571345058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.546 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds