Wall clock time and date at job start Tue Mar 31 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47340 * 2 1 4 4 C 1.50701 * 109.46969 * 120.00248 * 2 1 3 5 5 O 1.21284 * 119.99631 * 119.99999 * 4 2 1 6 6 N 1.34771 * 119.99994 * 300.00042 * 4 2 1 7 7 C 1.46501 * 119.99845 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47199 * 179.97438 * 7 6 4 9 9 O 1.42890 * 109.47062 * 64.99973 * 8 7 6 10 10 C 1.42901 * 114.00190 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47113 * 180.02562 * 10 9 8 12 12 N 1.46499 * 109.47271 * 65.00216 * 11 10 9 13 13 C 1.46497 * 119.99861 * 269.99791 * 12 11 10 14 14 C 1.36932 * 120.00177 * 89.99792 * 12 11 10 15 15 H 1.07997 * 120.00197 * 22.70642 * 14 12 11 16 16 C 1.38817 * 120.00019 * 202.70804 * 14 12 11 17 17 N 1.31618 * 120.00007 * 11.50392 * 16 14 12 18 18 Si 1.86799 * 120.00155 * 191.50635 * 16 14 12 19 19 H 1.48500 * 109.47146 * 89.99814 * 18 16 14 20 20 H 1.48494 * 109.47158 * 209.99908 * 18 16 14 21 21 H 1.48502 * 109.47056 * 330.00199 * 18 16 14 22 22 C 1.50702 * 109.47130 * 240.00407 * 2 1 3 23 23 C 1.38215 * 120.01320 * 300.00332 * 22 2 1 24 24 C 1.38224 * 120.02768 * 179.97438 * 23 22 2 25 25 C 1.38267 * 120.05037 * 359.97438 * 24 23 22 26 26 C 1.38176 * 120.02433 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01393 * 119.97986 * 22 2 1 28 28 F 1.35096 * 120.02315 * 0.04454 * 27 22 2 29 29 H 1.09000 * 109.47363 * 299.99772 * 1 2 3 30 30 H 1.09006 * 109.47220 * 59.99675 * 1 2 3 31 31 H 1.08998 * 109.47524 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00188 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.47334 * 300.00191 * 7 6 4 34 34 H 1.09005 * 109.46652 * 59.99949 * 7 6 4 35 35 H 1.09000 * 109.46901 * 185.00233 * 8 7 6 36 36 H 1.09008 * 109.46993 * 304.99849 * 8 7 6 37 37 H 1.09003 * 109.46934 * 299.99918 * 10 9 8 38 38 H 1.08995 * 109.46998 * 59.99838 * 10 9 8 39 39 H 1.09005 * 109.46692 * 185.00025 * 11 10 9 40 40 H 1.08995 * 109.47338 * 304.99845 * 11 10 9 41 41 H 1.09001 * 109.47294 * 93.91751 * 13 12 11 42 42 H 1.08997 * 109.47705 * 213.92010 * 13 12 11 43 43 H 1.09010 * 109.46969 * 333.91658 * 13 12 11 44 44 H 0.96993 * 120.00272 * 179.97438 * 17 16 14 45 45 H 1.07998 * 119.98523 * 359.97438 * 23 22 2 46 46 H 1.08003 * 119.97631 * 179.97438 * 24 23 22 47 47 H 1.07997 * 119.98532 * 179.72522 * 25 24 23 48 48 H 1.08005 * 120.01007 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1945 -0.9411 3.6507 8 6 1.6851 -0.2195 4.9000 9 8 0.2610 -0.3192 4.9602 10 6 -0.3194 0.3259 6.0955 11 6 -1.8394 0.1555 6.0573 12 7 -2.1755 -1.2629 6.2038 13 6 -2.2962 -2.1134 5.0170 14 6 -2.3770 -1.7937 7.4498 15 1 -2.6523 -1.1507 8.2727 16 6 -2.2274 -3.1584 7.6554 17 7 -1.6775 -3.9079 6.7237 18 14 -2.8067 -3.9311 9.2544 19 1 -4.2216 -4.3592 9.1132 20 1 -1.9616 -5.1110 9.5686 21 1 -2.6975 -2.9374 10.3525 22 6 2.0323 -0.7103 -1.2305 23 6 1.6985 -2.0335 -1.4496 24 6 2.1587 -2.6852 -2.5785 25 6 2.9529 -2.0142 -3.4899 26 6 3.2878 -0.6913 -3.2730 27 6 2.8279 -0.0376 -2.1422 28 9 3.1551 1.2556 -1.9288 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.1487 0.5383 2.5436 33 1 1.8308 -1.9686 3.6504 34 1 3.2846 -0.9415 3.6507 35 1 2.1195 -0.6794 5.7876 36 1 1.9744 0.8306 4.8563 37 1 0.0733 -0.1223 7.0083 38 1 -0.0718 1.3872 6.0763 39 1 -2.2890 0.7216 6.8731 40 1 -2.2225 0.5233 5.1055 41 1 -1.3442 -2.6091 4.8270 42 1 -3.0692 -2.8633 5.1844 43 1 -2.5649 -1.5004 4.1566 44 1 -1.5726 -4.8614 6.8674 45 1 1.0779 -2.5585 -0.7386 46 1 1.8977 -3.7193 -2.7486 47 1 3.3155 -2.5256 -4.3693 48 1 3.9079 -0.1673 -3.9853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571345058.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:13 Heat of formation + Delta-G solvation = -103.163491 kcal Electronic energy + Delta-G solvation = -29365.387811 eV Core-core repulsion = 25141.803221 eV Total energy + Delta-G solvation = -4223.584590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.94216 -41.29128 -39.67385 -38.98057 -37.20935 -35.71879 -35.28818 -33.39339 -31.51349 -31.17969 -30.21436 -29.20186 -27.80536 -25.90410 -24.82569 -24.07123 -23.54985 -22.67818 -22.12791 -21.04962 -18.77260 -18.66872 -18.28732 -17.70496 -17.47973 -17.26287 -16.90854 -16.59995 -16.57499 -16.19886 -15.96249 -15.41132 -15.23295 -15.20206 -15.01273 -14.74774 -14.59759 -14.19652 -14.08479 -13.84442 -13.55741 -13.21003 -13.14170 -13.04013 -12.98552 -12.89442 -12.71725 -12.52659 -12.47684 -12.31841 -12.15067 -12.00711 -11.87105 -11.78354 -11.66125 -10.88087 -10.61125 -10.37553 -10.13127 -9.89324 -9.62127 -8.72254 -7.77289 -5.25357 0.17155 0.28474 1.46537 1.47907 1.56258 1.57385 2.14488 2.52962 2.69970 2.86735 3.26467 3.35675 3.40080 3.67448 3.78356 3.87169 3.99166 4.08620 4.13212 4.17252 4.21423 4.39674 4.43756 4.45413 4.53929 4.59813 4.63316 4.69662 4.74676 4.81794 4.88977 4.95512 4.96731 5.01913 5.09125 5.16115 5.22425 5.23511 5.38440 5.39014 5.41363 5.50377 5.67279 5.84598 5.95422 6.36417 6.46524 6.51350 7.19552 7.19935 7.93726 8.38868 9.25591 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.002282 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.300471 B =12265.478215 C =12848.112157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 H 0.121 0.879 4 C 0.515 3.485 5 O -0.576 6.576 6 N -0.708 5.708 7 C 0.131 3.869 8 C 0.054 3.946 9 O -0.392 6.392 10 C 0.051 3.949 11 C 0.145 3.855 12 N -0.613 5.613 13 C 0.196 3.804 14 C -0.259 4.259 15 H 0.075 0.925 16 C -0.057 4.057 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.266 1.266 22 C -0.114 4.114 23 C -0.076 4.076 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.159 4.159 27 C 0.083 3.917 28 F -0.145 7.145 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.020 0.980 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.062 0.938 41 H -0.001 1.001 42 H 0.007 0.993 43 H 0.021 0.979 44 H 0.243 0.757 45 H 0.117 0.883 46 H 0.147 0.853 47 H 0.164 0.836 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 12.020 -19.139 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 H 0.139 0.861 4 C 0.302 3.698 5 O -0.456 6.456 6 N -0.360 5.360 7 C 0.007 3.993 8 C -0.023 4.023 9 O -0.311 6.311 10 C -0.027 4.027 11 C 0.019 3.981 12 N -0.337 5.337 13 C 0.051 3.949 14 C -0.390 4.390 15 H 0.092 0.908 16 C -0.252 4.252 17 N -0.584 5.584 18 Si 0.795 3.205 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.190 1.190 22 C -0.115 4.115 23 C -0.094 4.094 24 C -0.153 4.153 25 C -0.105 4.105 26 C -0.177 4.177 27 C 0.064 3.936 28 F -0.124 7.124 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.252 0.748 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.017 0.983 42 H 0.026 0.974 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.136 0.864 46 H 0.165 0.835 47 H 0.181 0.819 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.213 11.129 -19.307 24.114 hybrid contribution -0.099 -0.379 1.472 1.523 sum 9.114 10.751 -17.834 22.731 Atomic orbital electron populations 1.21797 0.90008 1.03149 1.04404 1.20203 0.99179 1.00513 0.88805 0.86132 1.20860 0.79569 0.84149 0.85262 1.90694 1.39740 1.27866 1.87272 1.45799 1.53235 1.32225 1.04725 1.21242 0.98829 0.95964 0.83251 1.22687 0.82610 1.00462 0.96513 1.87962 1.19221 1.78250 1.45673 1.23261 0.96895 0.95325 0.87266 1.21147 0.91496 0.84975 1.00498 1.44107 1.80816 1.05990 1.02738 1.20316 0.97227 0.91451 0.85949 1.19578 1.39042 0.91854 0.88483 0.90778 1.25815 1.00535 0.98163 1.00711 1.70283 1.47877 1.04781 1.35414 0.85276 0.77224 0.77812 0.80188 1.21481 1.22648 1.19033 1.19485 1.00477 0.95642 0.95915 1.20946 0.98496 0.92892 0.97114 1.21519 0.98371 1.01401 0.93989 1.21388 0.96057 0.93188 0.99905 1.21409 1.02757 0.96510 0.97047 1.17722 0.99700 0.79046 0.97163 1.91445 1.91179 1.34777 1.94973 0.90193 0.89624 0.92710 0.74845 0.93868 0.89398 0.92837 0.90150 0.96159 0.91176 0.90968 0.91921 0.98288 0.97397 0.96097 0.94728 0.86447 0.83496 0.81870 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.90 71.98 0.64 -1.82 16 2 C -0.07 -1.42 2.89 -12.29 -0.04 -1.45 16 3 H 0.12 2.21 7.13 -2.39 -0.02 2.19 16 4 C 0.51 14.33 7.02 87.66 0.62 14.94 16 5 O -0.58 -20.66 15.11 -3.04 -0.05 -20.71 16 6 N -0.71 -17.78 5.40 -463.06 -2.50 -20.28 16 7 C 0.13 3.75 6.06 86.38 0.52 4.27 16 8 C 0.05 1.49 6.07 71.98 0.44 1.93 16 9 O -0.39 -13.86 9.84 -148.98 -1.47 -15.32 16 10 C 0.05 1.76 6.28 71.98 0.45 2.21 16 11 C 0.14 5.52 6.11 86.38 0.53 6.05 16 12 N -0.61 -30.79 2.89 -726.93 -2.10 -32.89 16 13 C 0.20 10.13 8.61 127.77 1.10 11.23 16 14 C -0.26 -14.18 9.67 84.04 0.81 -13.36 16 15 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 16 C -0.06 -3.26 5.12 84.86 0.43 -2.83 16 17 N -0.94 -57.05 10.62 21.65 0.23 -56.82 16 18 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 C -0.11 -2.65 4.40 -19.82 -0.09 -2.74 16 23 C -0.08 -1.77 7.93 22.26 0.18 -1.60 16 24 C -0.13 -2.46 10.04 22.27 0.22 -2.23 16 25 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 26 C -0.16 -2.69 10.03 22.31 0.22 -2.46 16 27 C 0.08 1.79 7.25 22.38 0.16 1.95 16 28 F -0.15 -3.18 16.19 44.97 0.73 -2.45 16 29 H 0.08 1.29 7.56 -2.39 -0.02 1.27 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.13 7.39 -2.39 -0.02 1.12 16 32 H 0.41 8.37 7.89 -92.71 -0.73 7.64 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 40 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 41 H 0.00 -0.07 7.43 -2.39 -0.02 -0.09 16 42 H 0.01 0.41 7.20 -2.39 -0.02 0.40 16 43 H 0.02 0.93 7.85 -2.38 -0.02 0.91 16 44 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.12 2.97 7.52 -2.91 -0.02 2.94 16 46 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 48 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.28 400.55 3.53 -70.75 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.22 Total: 17.05 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.43 Total: 13.02 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.37 Total: -109.98 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.51 Total: -36.03 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.73 Total: -2.45 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.28 3.53 -70.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571345058.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.417 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds