Wall clock time and date at job start Tue Mar 31 2020 22:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99883 * 2 1 4 4 C 1.53001 * 109.47141 * 125.00369 * 3 2 1 5 5 C 1.53003 * 109.47346 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46679 * 54.99749 * 5 4 3 7 7 C 1.52994 * 109.46986 * 175.00087 * 5 4 3 8 8 N 1.46892 * 109.46978 * 295.00295 * 5 4 3 9 9 C 1.48558 * 111.00268 * 288.05274 * 8 5 4 10 10 C 1.54378 * 104.60038 * 200.96336 * 9 8 5 11 11 H 1.08995 * 117.60479 * 244.71827 * 10 9 8 12 12 C 1.57014 * 118.21155 * 86.25962 * 10 9 8 13 13 H 1.09001 * 118.44178 * 15.71066 * 12 10 9 14 14 C 1.53008 * 116.97016 * 161.28921 * 12 10 9 15 15 N 1.46504 * 109.46750 * 243.02358 * 14 12 10 16 16 C 1.34774 * 119.99493 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00240 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99787 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46844 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99467 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00739 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47309 * 60.00160 * 24 22 20 26 26 H 1.48504 * 109.47136 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47173 * 299.99675 * 24 22 20 28 28 C 1.53002 * 59.66644 * 268.82970 * 12 10 9 29 29 H 1.09005 * 119.52237 * 247.60162 * 28 12 10 30 30 C 1.48559 * 111.00096 * 172.63506 * 8 5 4 31 31 H 1.07997 * 119.99927 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99975 * 359.97438 * 1 2 3 33 33 H 1.08000 * 120.00004 * 180.02562 * 2 1 3 34 34 H 1.09001 * 109.47166 * 5.00582 * 3 2 1 35 35 H 1.09002 * 109.47199 * 245.00601 * 3 2 1 36 36 H 1.09001 * 109.46917 * 60.00061 * 4 3 2 37 37 H 1.09002 * 109.47264 * 300.00193 * 4 3 2 38 38 H 1.09007 * 109.46830 * 172.31885 * 7 5 4 39 39 H 1.08998 * 109.47237 * 52.31753 * 7 5 4 40 40 H 1.08999 * 109.47028 * 292.31597 * 7 5 4 41 41 H 1.09009 * 110.41190 * 319.74346 * 9 8 5 42 42 H 1.08997 * 110.41523 * 82.17985 * 9 8 5 43 43 H 1.08994 * 109.46994 * 3.02396 * 14 12 10 44 44 H 1.08998 * 109.46976 * 123.02453 * 14 12 10 45 45 H 0.97001 * 120.00127 * 359.97438 * 15 14 12 46 46 H 1.08996 * 109.46971 * 300.00039 * 18 16 15 47 47 H 1.08998 * 109.46934 * 60.00292 * 18 16 15 48 48 H 0.97008 * 120.00257 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.41357 * 277.81760 * 30 8 5 50 50 H 1.09008 * 110.40925 * 40.25972 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 1 3.0924 3.4865 1.1810 7 6 4.6802 2.7388 2.4304 8 7 4.6450 2.7351 -0.0182 9 6 5.7991 1.8052 0.0824 10 6 6.8350 2.3609 -0.9183 11 1 7.0888 1.7417 -1.7787 12 6 7.8205 3.4783 -0.4228 13 1 7.9237 3.6409 0.6501 14 6 9.0900 3.6996 -1.2477 15 7 10.2648 3.3954 -0.4269 16 6 11.5014 3.5207 -0.9479 17 8 11.6418 3.8857 -2.0959 18 6 12.7100 3.2083 -0.1034 19 16 14.2118 3.4699 -1.0793 20 6 15.4325 3.0432 0.1175 21 1 15.1329 2.7356 1.1085 22 6 16.7792 3.1034 -0.2129 23 7 17.1445 3.4798 -1.4203 24 14 18.0734 2.6504 1.0556 25 1 17.8725 1.2438 1.4872 26 1 19.4250 2.7971 0.4581 27 1 17.9517 3.5508 2.2303 28 6 6.4855 3.8560 -1.0680 29 1 6.4793 4.3497 -2.0398 30 6 5.2681 4.0777 -0.1451 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1316 0.0897 35 1 2.6212 1.4027 -0.9314 36 1 3.7400 0.5065 1.0919 37 1 2.4774 1.2355 2.1130 38 1 5.3255 3.6148 2.3641 39 1 5.2933 1.8404 2.5019 40 1 4.0485 2.8190 3.3150 41 1 6.2059 1.8121 1.0937 42 1 5.5002 0.7961 -0.2010 43 1 9.0759 3.0448 -2.1188 44 1 9.1343 4.7384 -1.5746 45 1 10.1526 3.1045 0.4916 46 1 12.7236 3.8632 0.7677 47 1 12.6660 2.1694 0.2236 48 1 18.0857 3.5215 -1.6514 49 1 4.5692 4.7797 -0.5999 50 1 5.5917 4.4403 0.8306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649468174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:12 Heat of formation + Delta-G solvation = 12.772562 kcal Electronic energy + Delta-G solvation = -25777.327348 eV Core-core repulsion = 22124.983298 eV Total energy + Delta-G solvation = -3652.344049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70118 -39.08943 -37.28616 -35.32547 -34.06126 -32.42602 -31.55734 -29.72114 -29.15669 -28.84162 -26.67919 -25.45805 -24.54304 -23.04073 -21.14505 -20.82032 -20.11095 -20.04383 -19.68992 -17.86247 -16.86356 -16.43441 -16.01688 -15.72309 -15.34616 -15.21782 -14.95169 -14.80156 -14.42620 -14.29223 -13.99208 -13.79519 -13.69649 -13.21470 -13.08047 -13.02340 -12.55316 -12.47804 -12.41173 -12.23381 -12.10931 -11.86500 -11.53955 -11.46726 -11.43461 -11.07657 -11.04390 -11.03801 -10.92711 -10.77506 -10.40823 -10.07807 -9.82320 -9.69258 -9.39816 -9.06117 -8.86479 -8.73986 -8.23800 -6.49797 -6.21279 -3.91988 1.92086 2.94967 3.09010 3.17346 3.23543 3.27724 3.30916 3.49837 3.74118 4.08306 4.19690 4.20801 4.37253 4.54408 4.56139 4.69210 4.71632 4.75914 4.86290 4.88614 4.94998 5.00748 5.09613 5.12086 5.13753 5.18213 5.19998 5.31541 5.33032 5.42451 5.47857 5.52732 5.54794 5.60060 5.66356 5.69695 5.76225 5.83230 5.86710 5.90067 5.90363 5.98952 6.14018 6.26264 6.40580 6.41680 6.61347 6.63898 7.59361 7.70545 8.35158 8.61163 9.23816 10.86093 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.001541 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.712872 B =18164.435457 C =18535.040271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.088 4.088 4 C -0.102 4.102 5 C 0.068 3.932 6 H 0.083 0.917 7 C -0.191 4.191 8 N -0.500 5.500 9 C 0.052 3.948 10 C -0.158 4.158 11 H 0.121 0.879 12 C -0.132 4.132 13 H 0.107 0.893 14 C 0.154 3.846 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.149 4.149 29 H 0.119 0.881 30 C 0.056 3.944 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.269 0.731 49 H 0.086 0.914 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.573 -3.328 7.213 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.168 4.168 3 C -0.125 4.125 4 C -0.140 4.140 5 C -0.041 4.041 6 H 0.101 0.899 7 C -0.249 4.249 8 N -0.224 5.224 9 C -0.075 4.075 10 C -0.177 4.177 11 H 0.139 0.861 12 C -0.151 4.151 13 H 0.125 0.875 14 C 0.030 3.970 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.168 4.168 29 H 0.137 0.863 30 C -0.071 4.071 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -32.576 -2.806 4.696 33.032 hybrid contribution 1.035 -0.706 3.298 3.528 sum -31.541 -3.512 7.994 32.728 Atomic orbital electron populations 1.23830 0.96048 1.01644 1.02392 1.23066 0.96027 0.98870 0.98876 1.20693 0.97617 0.94452 0.99786 1.21526 0.97673 0.96455 0.98314 1.21864 0.95238 0.98952 0.88065 0.89906 1.22510 1.01053 1.02361 0.99001 1.65767 1.16961 1.03890 1.35784 1.22753 0.89494 0.97344 0.97916 1.24255 1.00255 0.91318 1.01867 0.86087 1.23290 0.90155 1.01982 0.99623 0.87482 1.20711 0.81874 1.01398 0.93046 1.45966 1.05331 1.71506 1.16346 1.20308 0.83584 0.76553 0.87792 1.90705 1.85860 1.44687 1.17968 1.23529 0.98913 1.04606 1.03333 1.85400 0.91702 1.88588 1.17638 1.22832 0.92805 1.52894 0.99970 0.90985 1.24986 0.97802 0.94721 0.96007 1.70010 1.17365 1.44219 1.18693 0.86228 0.79634 0.79041 0.80614 1.19942 1.20794 1.19953 1.23427 0.93210 0.98929 1.01247 0.86323 1.22687 0.94436 0.91903 0.98092 0.88801 0.88743 0.87668 0.91995 0.89598 0.91734 0.91706 0.92165 0.91757 0.91886 0.92471 0.89674 0.91229 0.90975 0.76806 0.89240 0.89216 0.92123 0.89594 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 14.32 29.01 0.42 -0.77 16 2 C -0.15 -0.92 9.52 -36.03 -0.34 -1.27 16 3 C -0.09 -0.53 5.55 -27.88 -0.15 -0.69 16 4 C -0.10 -0.56 4.69 -26.73 -0.13 -0.69 16 5 C 0.07 0.39 2.34 -67.72 -0.16 0.23 16 6 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 7 C -0.19 -1.04 8.16 37.15 0.30 -0.74 16 8 N -0.50 -3.42 4.80 -222.03 -1.07 -4.48 16 9 C 0.05 0.37 5.37 -2.18 -0.01 0.35 16 10 C -0.16 -1.26 6.90 -87.06 -0.60 -1.86 16 11 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 12 C -0.13 -1.09 5.60 -88.44 -0.50 -1.59 16 13 H 0.11 0.83 8.04 -51.93 -0.42 0.41 16 14 C 0.15 1.76 5.96 -4.04 -0.02 1.73 16 15 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 16 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 17 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.15 -1.15 6.70 -89.24 -0.60 -1.74 16 29 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 30 C 0.06 0.39 6.14 -2.19 -0.01 0.37 16 31 H 0.09 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.09 0.51 7.84 -52.49 -0.41 0.10 16 33 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 35 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 36 H 0.06 0.38 7.15 -51.93 -0.37 0.01 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.35 6.12 -51.92 -0.32 0.04 16 39 H 0.06 0.37 6.39 -51.93 -0.33 0.04 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.39 5.37 -51.92 -0.28 0.11 16 42 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 43 H 0.07 0.87 7.95 -51.93 -0.41 0.45 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.40 4.07 8.40 -40.82 -0.34 3.72 16 46 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 47 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.34 5.98 -51.92 -0.31 0.03 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -33.41 413.07 -11.66 -45.07 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.59 Total: 0.60 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.47 Total: -12.69 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.67 Total: -39.98 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.41 -11.66 -45.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649468174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.838 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds