Wall clock time and date at job start Tue Mar 31 2020 22:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99883 * 2 1 4 4 C 1.53001 * 109.47141 * 125.00369 * 3 2 1 5 5 C 1.53003 * 109.47346 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46679 * 54.99749 * 5 4 3 7 7 C 1.52994 * 109.46986 * 175.00087 * 5 4 3 8 8 N 1.46892 * 109.46978 * 295.00295 * 5 4 3 9 9 C 1.48558 * 111.00268 * 288.05274 * 8 5 4 10 10 C 1.54378 * 104.60038 * 200.96336 * 9 8 5 11 11 H 1.08995 * 117.60479 * 244.71827 * 10 9 8 12 12 C 1.57014 * 118.21155 * 86.25962 * 10 9 8 13 13 H 1.09001 * 118.44178 * 15.71066 * 12 10 9 14 14 C 1.53008 * 116.97016 * 161.28921 * 12 10 9 15 15 N 1.46504 * 109.46750 * 243.02358 * 14 12 10 16 16 C 1.34774 * 119.99493 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00240 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99787 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46844 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99467 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00739 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47309 * 60.00160 * 24 22 20 26 26 H 1.48504 * 109.47136 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47173 * 299.99675 * 24 22 20 28 28 C 1.53002 * 59.66644 * 268.82970 * 12 10 9 29 29 H 1.09005 * 119.52237 * 247.60162 * 28 12 10 30 30 C 1.48559 * 111.00096 * 172.63506 * 8 5 4 31 31 H 1.07997 * 119.99927 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99975 * 359.97438 * 1 2 3 33 33 H 1.08000 * 120.00004 * 180.02562 * 2 1 3 34 34 H 1.09001 * 109.47166 * 5.00582 * 3 2 1 35 35 H 1.09002 * 109.47199 * 245.00601 * 3 2 1 36 36 H 1.09001 * 109.46917 * 60.00061 * 4 3 2 37 37 H 1.09002 * 109.47264 * 300.00193 * 4 3 2 38 38 H 1.09007 * 109.46830 * 172.31885 * 7 5 4 39 39 H 1.08998 * 109.47237 * 52.31753 * 7 5 4 40 40 H 1.08999 * 109.47028 * 292.31597 * 7 5 4 41 41 H 1.09009 * 110.41190 * 319.74346 * 9 8 5 42 42 H 1.08997 * 110.41523 * 82.17985 * 9 8 5 43 43 H 1.08994 * 109.46994 * 3.02396 * 14 12 10 44 44 H 1.08998 * 109.46976 * 123.02453 * 14 12 10 45 45 H 0.97001 * 120.00127 * 359.97438 * 15 14 12 46 46 H 1.08996 * 109.46971 * 300.00039 * 18 16 15 47 47 H 1.08998 * 109.46934 * 60.00292 * 18 16 15 48 48 H 0.97008 * 120.00257 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.41357 * 277.81760 * 30 8 5 50 50 H 1.09008 * 110.40925 * 40.25972 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 1 3.0924 3.4865 1.1810 7 6 4.6802 2.7388 2.4304 8 7 4.6450 2.7351 -0.0182 9 6 5.7991 1.8052 0.0824 10 6 6.8350 2.3609 -0.9183 11 1 7.0888 1.7417 -1.7787 12 6 7.8205 3.4783 -0.4228 13 1 7.9237 3.6409 0.6501 14 6 9.0900 3.6996 -1.2477 15 7 10.2648 3.3954 -0.4269 16 6 11.5014 3.5207 -0.9479 17 8 11.6418 3.8857 -2.0959 18 6 12.7100 3.2083 -0.1034 19 16 14.2118 3.4699 -1.0793 20 6 15.4325 3.0432 0.1175 21 1 15.1329 2.7356 1.1085 22 6 16.7792 3.1034 -0.2129 23 7 17.1445 3.4798 -1.4203 24 14 18.0734 2.6504 1.0556 25 1 17.8725 1.2438 1.4872 26 1 19.4250 2.7971 0.4581 27 1 17.9517 3.5508 2.2303 28 6 6.4855 3.8560 -1.0680 29 1 6.4793 4.3497 -2.0398 30 6 5.2681 4.0777 -0.1451 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1316 0.0897 35 1 2.6212 1.4027 -0.9314 36 1 3.7400 0.5065 1.0919 37 1 2.4774 1.2355 2.1130 38 1 5.3255 3.6148 2.3641 39 1 5.2933 1.8404 2.5019 40 1 4.0485 2.8190 3.3150 41 1 6.2059 1.8121 1.0937 42 1 5.5002 0.7961 -0.2010 43 1 9.0759 3.0448 -2.1188 44 1 9.1343 4.7384 -1.5746 45 1 10.1526 3.1045 0.4916 46 1 12.7236 3.8632 0.7677 47 1 12.6660 2.1694 0.2236 48 1 18.0857 3.5215 -1.6514 49 1 4.5692 4.7797 -0.5999 50 1 5.5917 4.4403 0.8306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649468174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:11 Heat of formation + Delta-G solvation = -8.020564 kcal Electronic energy + Delta-G solvation = -25778.229005 eV Core-core repulsion = 22124.983298 eV Total energy + Delta-G solvation = -3653.245707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32845 -40.47641 -37.90422 -36.07847 -35.03616 -34.57676 -32.29834 -30.99700 -29.72150 -29.39262 -27.86842 -27.38504 -25.11334 -23.63756 -22.05313 -21.65078 -21.05526 -20.57125 -20.18540 -19.80125 -17.86042 -17.59200 -17.04953 -16.87180 -16.64198 -16.26504 -16.05599 -15.78933 -15.43764 -15.01624 -14.82437 -14.77319 -14.63997 -14.45225 -14.27656 -13.85462 -13.56175 -13.41048 -13.16541 -13.05618 -12.90991 -12.85752 -12.75302 -12.62870 -12.55727 -12.15040 -12.06773 -11.96245 -11.74193 -11.54409 -11.38624 -11.19785 -11.12331 -10.82246 -10.77657 -10.27605 -10.15918 -10.07105 -9.25161 -8.66468 -8.33916 -6.12332 1.26956 1.44508 1.46255 1.47143 1.56795 1.60477 2.19253 2.28451 2.52714 2.99983 3.00222 3.32584 3.41572 3.63894 3.82330 3.88459 4.02630 4.10175 4.15630 4.18460 4.24632 4.26490 4.27485 4.30413 4.47299 4.50366 4.51394 4.55396 4.59330 4.67195 4.71265 4.74846 4.86684 4.90606 4.98092 5.01789 5.08624 5.09398 5.20389 5.24410 5.28596 5.38984 5.42065 5.43067 5.44694 5.80468 5.90155 5.95807 6.14891 6.20121 6.49834 7.07208 7.23497 8.75083 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.001541 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.712872 B =18164.435457 C =18535.040271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.083 4.083 4 C -0.097 4.097 5 C 0.069 3.931 6 H 0.084 0.916 7 C -0.187 4.187 8 N -0.507 5.507 9 C 0.056 3.944 10 C -0.160 4.160 11 H 0.115 0.885 12 C -0.125 4.125 13 H 0.122 0.878 14 C 0.155 3.845 15 N -0.709 5.709 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 C -0.147 4.147 29 H 0.116 0.884 30 C 0.059 3.941 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.417 0.583 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.887 -3.965 9.851 35.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.178 4.178 3 C -0.120 4.120 4 C -0.135 4.135 5 C -0.039 4.039 6 H 0.103 0.897 7 C -0.245 4.245 8 N -0.231 5.231 9 C -0.071 4.071 10 C -0.179 4.179 11 H 0.133 0.867 12 C -0.144 4.144 13 H 0.140 0.860 14 C 0.032 3.968 15 N -0.364 5.364 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.166 4.166 29 H 0.134 0.866 30 C -0.069 4.069 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.254 0.746 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.108 0.892 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -33.948 -3.456 7.379 34.912 hybrid contribution 1.266 -0.512 2.461 2.815 sum -32.681 -3.969 9.841 34.361 Atomic orbital electron populations 1.23972 0.96078 1.02212 1.01834 1.23144 0.96270 0.99013 0.99390 1.20620 0.97550 0.94465 0.99389 1.21480 0.97458 0.96239 0.98273 1.21869 0.95140 0.99067 0.87833 0.89739 1.22468 1.00973 1.02121 0.98982 1.65764 1.16942 1.03790 1.36563 1.22722 0.89238 0.97316 0.97820 1.24276 1.00145 0.91476 1.01964 0.86718 1.23097 0.88811 1.02760 0.99729 0.86029 1.20756 0.82323 1.00652 0.93117 1.45699 1.04038 1.69377 1.17240 1.20078 0.84721 0.76407 0.86904 1.90694 1.86623 1.47326 1.19926 1.23369 0.95672 1.06348 1.02634 1.85590 0.96494 1.89200 1.21257 1.23183 0.93324 1.52846 1.00230 0.89849 1.26124 1.00377 0.94281 0.98268 1.70181 1.17935 1.45538 1.21134 0.85008 0.76094 0.79287 0.77629 1.18645 1.20417 1.18637 1.23476 0.93048 0.98733 1.01338 0.86551 1.22687 0.94007 0.92043 0.98123 0.88115 0.88393 0.87475 0.91972 0.90880 0.92042 0.91160 0.92379 0.91915 0.91232 0.91911 0.89702 0.92285 0.91805 0.74600 0.87098 0.87148 0.91994 0.89198 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 67.78 0.97 -1.19 16 2 C -0.16 -1.81 9.52 25.64 0.24 -1.57 16 3 C -0.08 -0.92 5.55 29.85 0.17 -0.75 16 4 C -0.10 -0.92 4.69 30.60 0.14 -0.78 16 5 C 0.07 0.67 2.34 44.92 0.11 0.78 16 6 H 0.08 0.81 8.11 -2.39 -0.02 0.79 16 7 C -0.19 -1.62 8.16 71.98 0.59 -1.04 16 8 N -0.51 -6.07 4.80 -856.37 -4.11 -10.17 16 9 C 0.06 0.69 5.37 86.45 0.46 1.15 16 10 C -0.16 -2.31 6.90 -8.49 -0.06 -2.36 16 11 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 12 C -0.13 -1.84 5.60 -9.38 -0.05 -1.90 16 13 H 0.12 1.50 8.04 -2.39 -0.02 1.48 16 14 C 0.16 3.39 5.96 86.38 0.51 3.90 16 15 N -0.71 -17.46 5.56 -463.05 -2.57 -20.03 16 16 C 0.53 19.56 7.85 87.66 0.69 20.25 16 17 O -0.57 -26.44 15.86 -3.02 -0.05 -26.48 16 18 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 19 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 20 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 24 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 C -0.15 -2.04 6.70 -9.90 -0.07 -2.11 16 29 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 30 C 0.06 0.69 6.14 86.45 0.53 1.22 16 31 H 0.10 0.90 8.06 -2.91 -0.02 0.87 16 32 H 0.10 0.94 7.84 -2.91 -0.02 0.92 16 33 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.06 0.67 7.79 -2.39 -0.02 0.65 16 35 H 0.07 1.00 7.75 -2.39 -0.02 0.99 16 36 H 0.06 0.63 7.15 -2.39 -0.02 0.62 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.54 6.12 -2.38 -0.01 0.52 16 39 H 0.06 0.57 6.39 -2.39 -0.02 0.56 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.71 5.37 -2.38 -0.01 0.70 16 42 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 43 H 0.06 1.45 7.95 -2.39 -0.02 1.43 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.42 7.27 8.40 -92.71 -0.78 6.49 16 46 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 47 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 48 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 49 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.62 5.98 -2.38 -0.01 0.61 16 Total: -1.00 -73.96 413.07 0.34 -73.61 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.14 Total: 21.42 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 5.79 Total: -18.33 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -6.40 Total: -85.99 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -73.96 0.34 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649468174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.593 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds