Wall clock time and date at job start Tue Mar 31 2020 20:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99702 * 275.19736 * 4 3 2 6 6 H 1.08001 * 120.00195 * 37.16408 * 5 4 3 7 7 C 1.38811 * 120.00370 * 217.15333 * 5 4 3 8 8 N 1.31623 * 119.99472 * 22.18210 * 7 5 4 9 9 Si 1.86792 * 120.00443 * 202.17572 * 7 5 4 10 10 H 1.48499 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47180 * 120.00462 * 9 7 5 12 12 H 1.48506 * 109.47149 * 240.00323 * 9 7 5 13 13 C 1.46496 * 120.00302 * 95.20044 * 4 3 2 14 14 C 1.52995 * 109.47045 * 270.00277 * 13 4 3 15 15 N 1.46504 * 109.47254 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00196 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00082 * 180.27164 * 16 15 14 19 19 H 1.08999 * 109.46829 * 59.72783 * 18 16 15 20 20 C 1.53005 * 109.47464 * 299.72969 * 18 16 15 21 21 O 1.42897 * 109.47500 * 179.72444 * 18 16 15 22 22 C 1.35948 * 117.00271 * 204.55021 * 21 18 16 23 23 C 1.38661 * 120.06722 * 354.60135 * 22 21 18 24 24 C 1.38177 * 119.97367 * 179.71967 * 23 22 21 25 25 C 1.38267 * 120.09308 * 0.55731 * 24 23 22 26 26 C 1.38256 * 120.12573 * 359.71778 * 25 24 23 27 27 C 1.38332 * 120.03016 * 0.02562 * 26 25 24 28 28 F 1.35098 * 120.04948 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46875 * 299.99723 * 1 2 3 31 31 H 1.09005 * 109.47523 * 59.99674 * 1 2 3 32 32 H 1.09008 * 109.46875 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.47105 * 120.00323 * 2 1 3 34 34 H 1.08998 * 109.46954 * 60.00247 * 3 2 1 35 35 H 1.09005 * 109.47149 * 300.00555 * 3 2 1 36 36 H 0.96996 * 119.99955 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47447 * 149.99892 * 13 4 3 38 38 H 1.09005 * 109.46755 * 29.99709 * 13 4 3 39 39 H 1.09003 * 109.47704 * 59.99887 * 14 13 4 40 40 H 1.08997 * 109.46908 * 299.99708 * 14 13 4 41 41 H 0.97006 * 119.99594 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.46945 * 299.99742 * 20 18 16 43 43 H 1.08999 * 109.46942 * 59.99693 * 20 18 16 44 44 H 1.08996 * 109.46957 * 179.97438 * 20 18 16 45 45 H 1.07995 * 120.00935 * 359.97300 * 23 22 21 46 46 H 1.07997 * 119.95379 * 180.27483 * 24 23 22 47 47 H 1.07999 * 119.93597 * 179.74573 * 25 24 23 48 48 H 1.07999 * 119.98434 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3348 1.1801 6 1 3.8149 0.6959 1.9659 7 6 5.3670 2.0468 1.3672 8 7 5.6067 3.1225 0.6475 9 14 6.6103 1.4784 2.6401 10 1 6.1075 0.2523 3.3101 11 1 7.9028 1.1821 1.9717 12 1 6.8092 2.5488 3.6501 13 6 4.2370 1.5576 -1.2643 14 6 4.4917 0.1612 -1.8352 15 7 5.2232 0.2764 -3.0994 16 6 5.5602 -0.8330 -3.7864 17 8 5.2575 -1.9267 -3.3585 18 6 6.3180 -0.7148 -5.0836 19 1 7.2687 -0.2126 -4.9045 20 6 5.4930 0.0971 -6.0843 21 8 6.5610 -2.0192 -5.6140 22 6 7.6224 -2.1569 -6.4523 23 6 8.3455 -1.0414 -6.8465 24 6 9.4275 -1.1841 -7.6940 25 6 9.7835 -2.4367 -8.1589 26 6 9.0618 -3.5510 -7.7729 27 6 7.9809 -3.4147 -6.9205 28 9 7.2757 -4.5033 -6.5427 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4289 3.6202 0.7784 37 1 5.1895 2.0575 -1.0883 38 1 3.6476 2.1383 -1.9740 39 1 3.5392 -0.3387 -2.0114 40 1 5.0811 -0.4194 -1.1256 41 1 5.4650 1.1512 -3.4418 42 1 4.5423 -0.4051 -6.2634 43 1 5.3077 1.0921 -5.6797 44 1 6.0414 0.1829 -7.0223 45 1 8.0656 -0.0618 -6.4880 46 1 9.9932 -0.3156 -7.9973 47 1 10.6271 -2.5449 -8.8244 48 1 9.3415 -4.5283 -8.1378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663664045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:49 Heat of formation + Delta-G solvation = -78.592168 kcal Electronic energy + Delta-G solvation = -29209.474947 eV Core-core repulsion = 24986.955850 eV Total energy + Delta-G solvation = -4222.519097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.89107 -40.69885 -39.19710 -37.56588 -36.48258 -34.37214 -32.96825 -32.35927 -30.99328 -30.75938 -29.85014 -28.10132 -25.60155 -25.03268 -23.71750 -22.97418 -22.47670 -20.99862 -20.40136 -19.94617 -18.82307 -17.64331 -17.19792 -16.71880 -16.24804 -16.19045 -15.66115 -15.48988 -15.08299 -14.97167 -14.67053 -14.52622 -14.35641 -13.98947 -13.82722 -13.38842 -13.18130 -12.99810 -12.88850 -12.81132 -12.63314 -12.44453 -12.23475 -11.87840 -11.60743 -11.55631 -11.41027 -11.23908 -11.21344 -10.97944 -10.77123 -10.46140 -10.40035 -10.11279 -9.92655 -9.78247 -9.53334 -9.24294 -8.66001 -8.51611 -8.45803 -6.67888 -5.88924 -3.46309 0.80614 0.94786 2.48445 2.76111 3.26950 3.31074 3.40666 3.44966 3.57976 3.99567 4.38907 4.41559 4.44025 4.55749 4.64911 4.76633 4.87385 4.90421 5.10005 5.22154 5.31969 5.34368 5.44063 5.64466 5.65213 5.73352 5.74130 5.80032 5.85347 5.98058 6.04963 6.06594 6.15206 6.25506 6.33302 6.38718 6.49936 6.59673 6.62799 6.75646 6.93765 6.95632 7.02912 7.15513 7.46428 7.76437 7.77517 8.41133 8.44505 9.09477 9.71568 10.28997 11.11275 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.002568 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.849520 B =10899.494417 C =11960.207902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.521 6.521 18 C 0.064 3.936 19 H 0.100 0.900 20 C -0.176 4.176 21 O -0.276 6.276 22 C 0.102 3.898 23 C -0.187 4.187 24 C -0.089 4.089 25 C -0.133 4.133 26 C -0.117 4.117 27 C 0.070 3.930 28 F -0.130 7.130 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.254 0.746 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.281 -19.068 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.389 4.389 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.366 5.366 16 C 0.294 3.706 17 O -0.396 6.396 18 C 0.004 3.996 19 H 0.118 0.882 20 C -0.234 4.234 21 O -0.188 6.188 22 C 0.055 3.945 23 C -0.206 4.206 24 C -0.107 4.107 25 C -0.151 4.151 26 C -0.136 4.136 27 C 0.050 3.950 28 F -0.108 7.108 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.159 0.841 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.871 -5.122 -18.601 19.899 hybrid contribution 0.838 0.095 0.511 0.986 sum 5.710 -5.027 -18.090 19.625 Atomic orbital electron populations 1.21721 0.97302 1.00445 1.00988 1.22190 0.93856 1.00896 1.01622 1.20943 0.84957 0.93001 0.98956 1.43617 0.99490 1.84761 1.02028 1.19063 1.05259 1.20805 0.93793 0.91975 1.25162 1.00822 0.94551 0.98170 1.70015 1.25403 1.14731 1.42749 0.86352 0.81531 0.78555 0.81138 1.19932 1.21395 1.21563 1.21055 1.00379 0.91045 0.86500 1.22552 0.94896 1.03032 0.82217 1.46021 1.58148 1.07860 1.24591 1.19917 0.80534 0.85356 0.84781 1.90749 1.53535 1.26490 1.68852 1.22360 1.00284 0.83399 0.93570 0.88236 1.22356 1.01558 1.00392 0.99072 1.86296 1.43333 1.30822 1.58346 1.19135 0.89255 0.93198 0.92886 1.21277 0.98691 0.97866 1.02773 1.21030 0.95761 0.97897 0.96006 1.20932 1.00733 0.91754 1.01719 1.21042 0.94165 1.00869 0.97508 1.17042 0.95068 0.81071 1.01829 1.91531 1.77417 1.51841 1.90028 0.93780 0.93192 0.93475 0.92931 0.92322 0.93520 0.94738 0.93583 0.88369 0.95212 0.92752 0.91570 0.76882 0.90511 0.89777 0.90767 0.84143 0.84948 0.84864 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.65 6.23 -26.73 -0.17 -2.82 16 3 C 0.15 3.01 5.72 -4.04 -0.02 2.98 16 4 N -0.58 -13.67 2.44 -173.24 -0.42 -14.10 16 5 C -0.26 -6.83 9.45 -15.06 -0.14 -6.97 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.35 4.94 -17.43 -0.09 0.26 16 8 N -0.89 -24.11 11.49 55.49 0.64 -23.47 16 9 Si 0.90 21.13 29.61 -169.99 -5.03 16.10 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.14 2.94 5.45 -4.05 -0.02 2.92 16 14 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 15 N -0.71 -11.32 5.45 -60.29 -0.33 -11.65 16 16 C 0.51 8.60 7.23 -10.99 -0.08 8.52 16 17 O -0.52 -11.37 16.50 -14.35 -0.24 -11.60 16 18 C 0.06 0.80 2.65 -27.88 -0.07 0.73 16 19 H 0.10 1.01 6.34 -51.93 -0.33 0.68 16 20 C -0.18 -1.63 9.06 37.16 0.34 -1.29 16 21 O -0.28 -4.18 9.20 -39.49 -0.36 -4.54 16 22 C 0.10 1.29 6.60 -39.17 -0.26 1.03 16 23 C -0.19 -1.74 8.23 -39.45 -0.32 -2.07 16 24 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 25 C -0.13 -0.97 10.04 -39.56 -0.40 -1.37 16 26 C -0.12 -1.06 10.02 -39.54 -0.40 -1.46 16 27 C 0.07 0.87 7.31 -39.30 -0.29 0.59 16 28 F -0.13 -1.92 17.11 2.25 0.04 -1.88 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.98 6.63 -51.92 -0.34 0.64 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 36 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.10 2.35 5.52 -51.93 -0.29 2.06 16 38 H 0.03 0.58 7.86 -51.93 -0.41 0.18 16 39 H 0.05 1.10 6.63 -51.93 -0.34 0.76 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.40 5.02 7.90 -40.82 -0.32 4.70 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.62 7.57 -51.93 -0.39 0.22 16 44 H 0.07 0.56 6.87 -51.93 -0.36 0.20 16 45 H 0.14 1.03 5.41 -52.49 -0.28 0.75 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 48 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -32.67 397.90 -8.94 -41.60 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.25 Total: 3.45 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.97 Total: 0.10 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.11 Total: -49.22 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.60 Total: -16.14 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.67 -8.94 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663664045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.989 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds