Wall clock time and date at job start Tue Mar 31 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 N 1.46502 * 109.47219 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99702 * 275.19736 * 4 3 2 6 6 H 1.08001 * 120.00195 * 37.16408 * 5 4 3 7 7 C 1.38811 * 120.00370 * 217.15333 * 5 4 3 8 8 N 1.31623 * 119.99472 * 22.18210 * 7 5 4 9 9 Si 1.86792 * 120.00443 * 202.17572 * 7 5 4 10 10 H 1.48499 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47180 * 120.00462 * 9 7 5 12 12 H 1.48506 * 109.47149 * 240.00323 * 9 7 5 13 13 C 1.46496 * 120.00302 * 95.20044 * 4 3 2 14 14 C 1.52995 * 109.47045 * 270.00277 * 13 4 3 15 15 N 1.46504 * 109.47254 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00196 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00107 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00082 * 180.27164 * 16 15 14 19 19 H 1.08999 * 109.46829 * 59.72783 * 18 16 15 20 20 C 1.53005 * 109.47464 * 299.72969 * 18 16 15 21 21 O 1.42897 * 109.47500 * 179.72444 * 18 16 15 22 22 C 1.35948 * 117.00271 * 204.55021 * 21 18 16 23 23 C 1.38661 * 120.06722 * 354.60135 * 22 21 18 24 24 C 1.38177 * 119.97367 * 179.71967 * 23 22 21 25 25 C 1.38267 * 120.09308 * 0.55731 * 24 23 22 26 26 C 1.38256 * 120.12573 * 359.71778 * 25 24 23 27 27 C 1.38332 * 120.03016 * 0.02562 * 26 25 24 28 28 F 1.35098 * 120.04948 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46875 * 299.99723 * 1 2 3 31 31 H 1.09005 * 109.47523 * 59.99674 * 1 2 3 32 32 H 1.09008 * 109.46875 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.47105 * 120.00323 * 2 1 3 34 34 H 1.08998 * 109.46954 * 60.00247 * 3 2 1 35 35 H 1.09005 * 109.47149 * 300.00555 * 3 2 1 36 36 H 0.96996 * 119.99955 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47447 * 149.99892 * 13 4 3 38 38 H 1.09005 * 109.46755 * 29.99709 * 13 4 3 39 39 H 1.09003 * 109.47704 * 59.99887 * 14 13 4 40 40 H 1.08997 * 109.46908 * 299.99708 * 14 13 4 41 41 H 0.97006 * 119.99594 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.46945 * 299.99742 * 20 18 16 43 43 H 1.08999 * 109.46942 * 59.99693 * 20 18 16 44 44 H 1.08996 * 109.46957 * 179.97438 * 20 18 16 45 45 H 1.07995 * 120.00935 * 359.97300 * 23 22 21 46 46 H 1.07997 * 119.95379 * 180.27483 * 24 23 22 47 47 H 1.07999 * 119.93597 * 179.74573 * 25 24 23 48 48 H 1.07999 * 119.98434 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1901 1.3348 1.1801 6 1 3.8149 0.6959 1.9659 7 6 5.3670 2.0468 1.3672 8 7 5.6067 3.1225 0.6475 9 14 6.6103 1.4784 2.6401 10 1 6.1075 0.2523 3.3101 11 1 7.9028 1.1821 1.9717 12 1 6.8092 2.5488 3.6501 13 6 4.2370 1.5576 -1.2643 14 6 4.4917 0.1612 -1.8352 15 7 5.2232 0.2764 -3.0994 16 6 5.5602 -0.8330 -3.7864 17 8 5.2575 -1.9267 -3.3585 18 6 6.3180 -0.7148 -5.0836 19 1 7.2687 -0.2126 -4.9045 20 6 5.4930 0.0971 -6.0843 21 8 6.5610 -2.0192 -5.6140 22 6 7.6224 -2.1569 -6.4523 23 6 8.3455 -1.0414 -6.8465 24 6 9.4275 -1.1841 -7.6940 25 6 9.7835 -2.4367 -8.1589 26 6 9.0618 -3.5510 -7.7729 27 6 7.9809 -3.4147 -6.9205 28 9 7.2757 -4.5033 -6.5427 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4289 3.6202 0.7784 37 1 5.1895 2.0575 -1.0883 38 1 3.6476 2.1383 -1.9740 39 1 3.5392 -0.3387 -2.0114 40 1 5.0811 -0.4194 -1.1256 41 1 5.4650 1.1512 -3.4418 42 1 4.5423 -0.4051 -6.2634 43 1 5.3077 1.0921 -5.6797 44 1 6.0414 0.1829 -7.0223 45 1 8.0656 -0.0618 -6.4880 46 1 9.9932 -0.3156 -7.9973 47 1 10.6271 -2.5449 -8.8244 48 1 9.3415 -4.5283 -8.1378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663664045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:48 Heat of formation + Delta-G solvation = -97.682066 kcal Electronic energy + Delta-G solvation = -29210.302747 eV Core-core repulsion = 24986.955850 eV Total energy + Delta-G solvation = -4223.346897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.86036 -41.70413 -40.37774 -38.52707 -38.13497 -35.88965 -34.63393 -33.46130 -32.45771 -31.66414 -30.63682 -29.64016 -27.35327 -26.10041 -25.03872 -23.90967 -23.36503 -22.59626 -21.92821 -21.36067 -19.68987 -18.91883 -18.42111 -18.01540 -17.34468 -17.21624 -16.96314 -16.83146 -16.56581 -16.06449 -15.97705 -15.67086 -15.45292 -15.42574 -15.24853 -14.70377 -14.37382 -14.36519 -14.23379 -13.97445 -13.50856 -13.35651 -13.28620 -13.10256 -12.95543 -12.93728 -12.66208 -12.63983 -12.51975 -12.23835 -12.19919 -12.05248 -11.99938 -11.88848 -11.69143 -11.34744 -10.94946 -10.54654 -10.13889 -9.94831 -9.26784 -8.61069 -7.87966 -5.49102 0.11392 0.23309 1.39623 1.42229 1.46245 1.47883 1.55426 2.40964 2.51528 2.59599 3.18929 3.23593 3.41210 3.63187 3.76641 3.77901 3.83841 3.94866 4.19819 4.23666 4.30898 4.32724 4.36390 4.42735 4.50865 4.62277 4.66400 4.67005 4.71584 4.84531 4.96333 4.98186 5.08259 5.08935 5.13607 5.21218 5.24897 5.25431 5.31598 5.41830 5.42202 5.60997 5.64011 5.67189 5.72590 6.18617 6.42528 6.49760 7.10229 7.15575 7.81214 8.32945 9.08100 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.002568 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.849520 B =10899.494417 C =11960.207902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.270 4.270 6 H 0.049 0.951 7 C -0.025 4.025 8 N -0.906 5.906 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.285 1.285 13 C 0.146 3.854 14 C 0.119 3.881 15 N -0.700 5.700 16 C 0.507 3.493 17 O -0.580 6.580 18 C 0.071 3.929 19 H 0.129 0.871 20 C -0.169 4.169 21 O -0.315 6.315 22 C 0.072 3.928 23 C -0.187 4.187 24 C -0.080 4.080 25 C -0.123 4.123 26 C -0.116 4.116 27 C 0.026 3.974 28 F -0.156 7.156 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.417 0.583 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.170 0.830 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -2.739 -21.430 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.019 3.981 14 C -0.007 4.007 15 N -0.353 5.353 16 C 0.293 3.707 17 O -0.459 6.459 18 C 0.011 3.989 19 H 0.146 0.854 20 C -0.226 4.226 21 O -0.229 6.229 22 C 0.026 3.974 23 C -0.205 4.205 24 C -0.098 4.098 25 C -0.141 4.141 26 C -0.135 4.135 27 C 0.006 3.994 28 F -0.135 7.135 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.254 0.746 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.179 0.821 46 H 0.187 0.813 47 H 0.187 0.813 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.191 -3.545 -20.994 22.173 hybrid contribution 0.479 -0.391 1.173 1.326 sum 6.669 -3.936 -19.820 21.279 Atomic orbital electron populations 1.21654 0.94216 1.01716 1.02088 1.22030 0.96482 0.98964 1.00119 1.21046 0.83301 0.94335 0.99239 1.43852 1.00899 1.84998 1.01992 1.19143 1.05939 1.20349 0.94577 0.93362 1.25677 1.01960 0.94769 0.99949 1.70082 1.25705 1.15299 1.43880 0.85554 0.79573 0.77964 0.79412 1.20191 1.21479 1.21202 1.20937 0.99442 0.91523 0.86207 1.22015 0.94262 1.01385 0.83078 1.45773 1.57410 1.08963 1.23188 1.20795 0.79719 0.84276 0.85937 1.90718 1.55908 1.28687 1.70590 1.22409 1.01250 0.83488 0.91712 0.85418 1.22377 1.00470 1.00504 0.99271 1.86226 1.44922 1.32181 1.59560 1.19456 0.89742 0.94360 0.93792 1.21576 0.98667 0.97557 1.02729 1.21530 0.94719 0.99260 0.94270 1.21422 1.00749 0.90983 1.00971 1.21360 0.93009 1.02686 0.96447 1.17663 0.96797 0.80719 1.04179 1.91448 1.78332 1.53118 1.90641 0.92464 0.92501 0.91951 0.93780 0.94494 0.94552 0.92951 0.93590 0.90540 0.93145 0.93415 0.95332 0.74607 0.92124 0.87378 0.88348 0.82091 0.81283 0.81295 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.17 16 2 C -0.14 -4.96 6.23 30.59 0.19 -4.77 16 3 C 0.15 5.93 5.72 86.38 0.49 6.43 16 4 N -0.60 -28.56 2.44 -702.02 -1.71 -30.27 16 5 C -0.27 -14.50 9.45 84.03 0.79 -13.71 16 6 H 0.05 2.68 7.92 -2.91 -0.02 2.65 16 7 C -0.03 -1.35 4.94 84.86 0.42 -0.93 16 8 N -0.91 -49.47 11.49 21.65 0.25 -49.22 16 9 Si 0.95 44.00 29.61 68.60 2.03 46.03 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 C 0.15 6.25 5.45 86.38 0.47 6.72 16 14 C 0.12 4.80 6.00 86.38 0.52 5.32 16 15 N -0.70 -22.11 5.45 -463.06 -2.52 -24.63 16 16 C 0.51 17.37 7.23 87.66 0.63 18.00 16 17 O -0.58 -26.65 16.50 16.00 0.26 -26.39 16 18 C 0.07 1.72 2.65 29.85 0.08 1.79 16 19 H 0.13 2.30 6.34 -2.39 -0.02 2.29 16 20 C -0.17 -2.77 9.06 71.98 0.65 -2.12 16 21 O -0.32 -9.81 9.20 -73.93 -0.68 -10.49 16 22 C 0.07 1.80 6.60 22.53 0.15 1.95 16 23 C -0.19 -2.97 8.23 22.36 0.18 -2.78 16 24 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 25 C -0.12 -1.34 10.04 22.28 0.22 -1.12 16 26 C -0.12 -1.95 10.02 22.30 0.22 -1.72 16 27 C 0.03 0.67 7.31 22.45 0.16 0.83 16 28 F -0.16 -5.00 17.11 44.97 0.77 -4.23 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.04 1.66 6.63 -2.38 -0.02 1.65 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.05 1.92 7.83 -2.38 -0.02 1.90 16 36 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 37 H 0.08 3.68 5.52 -2.39 -0.01 3.67 16 38 H 0.05 1.93 7.86 -2.38 -0.02 1.91 16 39 H 0.05 1.99 6.63 -2.39 -0.02 1.98 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.42 9.89 7.90 -92.70 -0.73 9.16 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.22 7.57 -2.39 -0.02 1.21 16 44 H 0.10 1.16 6.87 -2.39 -0.02 1.15 16 45 H 0.16 1.74 5.41 -2.91 -0.02 1.72 16 46 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 47 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 48 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -76.03 397.90 4.77 -71.26 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.24 Total: 17.84 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.13 Total: 10.09 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -3.99 Total: -104.12 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.42 Total: -36.88 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.77 Total: -4.23 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -76.03 4.77 -71.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663664045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.420 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds