Wall clock time and date at job start Tue Mar 31 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46851 * 2 1 4 4 C 1.53002 * 109.47512 * 239.99653 * 2 1 3 5 5 C 1.50706 * 109.46679 * 65.00072 * 4 2 1 6 6 C 1.38238 * 119.97441 * 269.72247 * 5 4 2 7 7 C 1.38200 * 120.02488 * 179.72908 * 6 5 4 8 8 C 1.38459 * 119.97481 * 0.57137 * 7 6 5 9 9 F 1.35098 * 120.02676 * 179.68351 * 8 7 6 10 10 C 1.38460 * 119.94814 * 359.70521 * 8 7 6 11 11 C 1.38203 * 119.97139 * 359.97438 * 10 8 7 12 12 C 1.50704 * 109.47248 * 119.99674 * 2 1 3 13 13 O 1.21279 * 119.99690 * 108.16659 * 12 2 1 14 14 N 1.34776 * 120.00064 * 288.17098 * 12 2 1 15 15 C 1.46506 * 119.99782 * 6.48733 * 14 12 2 16 16 C 1.52999 * 109.46798 * 95.58851 * 15 14 12 17 17 O 1.42897 * 109.47485 * 66.62220 * 16 15 14 18 18 C 1.46497 * 120.00245 * 186.49250 * 14 12 2 19 19 C 1.53000 * 109.47365 * 89.99775 * 18 14 12 20 20 N 1.46496 * 109.47287 * 180.02562 * 19 18 14 21 21 C 1.36942 * 119.99946 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99959 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99964 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00195 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46715 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47097 * 119.99657 * 25 23 21 28 28 H 1.48495 * 109.47201 * 240.00006 * 25 23 21 29 29 H 1.09000 * 109.47095 * 66.61565 * 1 2 3 30 30 H 1.08990 * 109.47536 * 306.61366 * 1 2 3 31 31 H 1.09005 * 109.46780 * 186.60800 * 1 2 3 32 32 H 1.09008 * 109.47069 * 184.99777 * 4 2 1 33 33 H 1.08993 * 109.46870 * 305.00348 * 4 2 1 34 34 H 1.08003 * 119.98532 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.00841 * 180.25584 * 7 6 5 36 36 H 1.07997 * 120.01638 * 180.02562 * 10 8 7 37 37 H 1.08005 * 119.98217 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47078 * 215.58675 * 15 14 12 39 39 H 1.08996 * 109.47432 * 335.58671 * 15 14 12 40 40 H 1.08998 * 109.47049 * 186.62326 * 16 15 14 41 41 H 1.09003 * 109.47201 * 306.61855 * 16 15 14 42 42 H 0.96700 * 114.00555 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.46984 * 209.99497 * 18 14 12 44 44 H 1.09000 * 109.46737 * 330.00128 * 18 14 12 45 45 H 1.09007 * 109.47001 * 300.00403 * 19 18 14 46 46 H 1.08999 * 109.47129 * 59.99523 * 19 18 14 47 47 H 0.97000 * 120.00146 * 359.97438 * 20 19 18 48 48 H 0.97004 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2094 -3.1027 7 6 0.0689 0.5075 -4.2250 8 6 0.9101 1.4849 -4.7292 9 9 0.5531 2.1819 -5.8301 10 6 2.1177 1.7469 -4.1046 11 6 2.4817 1.0332 -2.9785 12 6 2.0323 -0.7104 1.2305 13 8 2.5432 -1.8059 1.1321 14 7 1.9138 -0.1282 2.4403 15 6 1.1717 1.1273 2.5795 16 6 -0.2669 0.8249 3.0036 17 8 -0.2692 0.2746 4.3223 18 6 2.5271 -0.7508 3.6161 19 6 3.9534 -0.2241 3.7865 20 7 4.5669 -0.8471 4.9619 21 6 5.8506 -0.5266 5.3152 22 1 6.4108 0.1853 4.7270 23 6 6.4317 -1.1165 6.4292 24 7 5.7488 -1.9836 7.1462 25 14 8.1829 -0.6798 6.9108 26 1 8.7282 0.3115 5.9489 27 1 8.1903 -0.0998 8.2778 28 1 9.0225 -1.9044 6.8881 29 1 -0.3633 0.4079 -0.9433 30 1 -0.3634 0.6128 0.8248 31 1 -0.3633 -1.0209 0.1183 32 1 3.1265 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 -0.2156 -0.9755 -2.7123 35 1 -0.8732 0.3020 -4.7116 36 1 2.7745 2.5093 -4.4967 37 1 3.4239 1.2372 -2.4914 38 1 1.6500 1.7502 3.3353 39 1 1.1661 1.6538 1.6252 40 1 -0.8499 1.7459 2.9932 41 1 -0.7072 0.1085 2.3101 42 1 -1.1503 0.0586 4.6569 43 1 1.9417 -0.5077 4.5028 44 1 2.5527 -1.8323 3.4827 45 1 4.5389 -0.4671 2.8996 46 1 3.9279 0.8574 3.9197 47 1 4.0637 -1.4862 5.4903 48 1 6.1550 -2.3962 7.9245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672716900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:27 Heat of formation + Delta-G solvation = -93.165524 kcal Electronic energy + Delta-G solvation = -29251.028124 eV Core-core repulsion = 25027.877078 eV Total energy + Delta-G solvation = -4223.151045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.20959 -40.49833 -39.37793 -37.27850 -35.68571 -35.09756 -34.19795 -31.68478 -31.52505 -30.68726 -29.47778 -27.52941 -26.88704 -24.37335 -23.43015 -23.18910 -22.89374 -21.67073 -20.82837 -18.69626 -18.00999 -17.89495 -17.17829 -17.11909 -16.69653 -16.23640 -15.91057 -15.60582 -15.37383 -14.96076 -14.55287 -14.38898 -14.16738 -13.90869 -13.86546 -13.65907 -13.61334 -13.33907 -13.13471 -12.84945 -12.68463 -12.56614 -12.37318 -12.16588 -11.75049 -11.64951 -11.49777 -11.33715 -11.19932 -11.08856 -10.88608 -10.84207 -10.55746 -10.10526 -10.03061 -9.73233 -9.56001 -9.43902 -8.86982 -8.82063 -8.44393 -6.86653 -5.70722 -2.99519 0.76389 0.85619 2.73083 3.02818 3.25021 3.47255 3.52415 3.54994 3.91626 4.05368 4.22726 4.33979 4.51959 4.55198 4.65727 4.67220 4.76586 4.88633 4.90988 4.95366 4.98013 5.07553 5.10370 5.31464 5.38947 5.43699 5.48082 5.58205 5.60504 5.62934 5.68201 5.75801 5.85109 5.87414 5.87584 5.97005 6.01360 6.13758 6.23537 6.31016 6.53138 6.62607 6.82742 7.00435 7.46357 7.60928 7.75216 8.31811 8.47953 9.58646 10.16287 10.51413 11.52297 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.002309 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.186051 B =12121.494341 C =13368.397924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.064 4.064 5 C -0.085 4.085 6 C -0.087 4.087 7 C -0.153 4.153 8 C 0.089 3.911 9 F -0.143 7.143 10 C -0.151 4.151 11 C -0.087 4.087 12 C 0.513 3.487 13 O -0.532 6.532 14 N -0.598 5.598 15 C 0.103 3.897 16 C 0.051 3.949 17 O -0.561 6.561 18 C 0.109 3.891 19 C 0.144 3.856 20 N -0.729 5.729 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.377 0.623 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 8.867 -21.546 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.101 4.101 5 C -0.085 4.085 6 C -0.105 4.105 7 C -0.172 4.172 8 C 0.070 3.930 9 F -0.122 7.122 10 C -0.170 4.170 11 C -0.105 4.105 12 C 0.301 3.699 13 O -0.408 6.408 14 N -0.331 5.331 15 C -0.020 4.020 16 C -0.028 4.028 17 O -0.366 6.366 18 C -0.013 4.013 19 C 0.015 3.985 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.223 0.777 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.405 8.463 -21.701 29.077 hybrid contribution 0.108 0.249 0.312 0.414 sum -17.296 8.712 -21.388 28.853 Atomic orbital electron populations 1.22236 0.93132 1.03111 1.03365 1.21271 0.97681 1.00772 0.92897 0.88645 1.20432 1.02549 0.98274 0.88872 1.19999 0.94485 0.96876 0.97156 1.20980 0.96130 0.99012 0.94335 1.21146 1.00562 0.97070 0.98396 1.17746 0.95288 0.94141 0.85790 1.91496 1.91994 1.77687 1.50984 1.21168 0.96031 1.02267 0.97492 1.21016 0.99817 0.94641 0.94993 1.20546 0.78981 0.86038 0.84371 1.90729 1.44135 1.19995 1.85919 1.47787 1.53016 1.24116 1.08140 1.21744 0.90839 0.86812 1.02643 1.22954 0.97413 0.97441 0.84996 1.86608 1.33844 1.85210 1.30961 1.21740 0.94303 0.98660 0.86624 1.20899 0.91059 0.95407 0.91106 1.42211 1.14073 1.51778 1.29330 1.19249 0.89786 1.19927 1.07695 0.91223 1.24752 0.98487 0.99636 0.98273 1.69680 1.36615 1.32288 1.19575 0.86095 0.84558 0.77465 0.77957 1.20603 1.21877 1.21855 0.91049 0.91083 0.91864 0.89761 0.89673 0.84868 0.84837 0.84758 0.84762 0.89197 0.88773 0.92888 0.92706 0.77658 0.89214 0.90090 0.96405 0.96652 0.78220 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.09 37.16 0.30 -0.83 16 2 C -0.10 -0.98 1.87 -91.77 -0.17 -1.15 16 3 H 0.10 0.76 7.04 -51.93 -0.37 0.40 16 4 C -0.06 -0.60 4.15 -27.88 -0.12 -0.71 16 5 C -0.08 -0.67 4.72 -104.62 -0.49 -1.17 16 6 C -0.09 -0.61 7.86 -39.60 -0.31 -0.92 16 7 C -0.15 -1.12 10.03 -39.51 -0.40 -1.51 16 8 C 0.09 0.76 7.30 -39.42 -0.29 0.47 16 9 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 10 C -0.15 -1.17 10.03 -39.51 -0.40 -1.57 16 11 C -0.09 -0.67 9.70 -39.59 -0.38 -1.05 16 12 C 0.51 7.29 6.94 -10.98 -0.08 7.21 16 13 O -0.53 -9.93 15.61 5.56 0.09 -9.84 16 14 N -0.60 -8.42 2.47 -173.69 -0.43 -8.85 16 15 C 0.10 1.04 5.33 -4.04 -0.02 1.02 16 16 C 0.05 0.42 6.37 37.16 0.24 0.66 16 17 O -0.56 -6.03 12.06 -35.23 -0.42 -6.45 16 18 C 0.11 1.99 5.42 -4.04 -0.02 1.97 16 19 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 20 N -0.73 -19.67 5.60 -59.91 -0.34 -20.01 16 21 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 22 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 25 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 29 H 0.07 0.42 5.83 -51.93 -0.30 0.12 16 30 H 0.07 0.43 3.63 -51.93 -0.19 0.24 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.89 8.06 -51.92 -0.42 0.48 16 33 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.13 0.73 7.98 -52.48 -0.42 0.31 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.09 0.67 5.38 -51.93 -0.28 0.39 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.42 5.87 -51.93 -0.30 0.12 16 42 H 0.38 2.38 9.12 45.56 0.42 2.79 16 43 H 0.09 1.65 6.65 -51.93 -0.35 1.30 16 44 H 0.08 1.66 7.34 -51.93 -0.38 1.28 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.83 7.67 -40.82 -0.31 10.51 16 48 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -36.46 390.41 -8.14 -44.60 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.25 Total: 8.38 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.41 Total: -2.06 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.04 Total: -57.24 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.34 Total: -16.29 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.46 -8.14 -44.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672716900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.564 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds