Wall clock time and date at job start Tue Mar 31 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46851 * 2 1 4 4 C 1.53002 * 109.47512 * 239.99653 * 2 1 3 5 5 C 1.50706 * 109.46679 * 65.00072 * 4 2 1 6 6 C 1.38238 * 119.97441 * 269.72247 * 5 4 2 7 7 C 1.38200 * 120.02488 * 179.72908 * 6 5 4 8 8 C 1.38459 * 119.97481 * 0.57137 * 7 6 5 9 9 F 1.35098 * 120.02676 * 179.68351 * 8 7 6 10 10 C 1.38460 * 119.94814 * 359.70521 * 8 7 6 11 11 C 1.38203 * 119.97139 * 359.97438 * 10 8 7 12 12 C 1.50704 * 109.47248 * 119.99674 * 2 1 3 13 13 O 1.21279 * 119.99690 * 108.16659 * 12 2 1 14 14 N 1.34776 * 120.00064 * 288.17098 * 12 2 1 15 15 C 1.46506 * 119.99782 * 6.48733 * 14 12 2 16 16 C 1.52999 * 109.46798 * 95.58851 * 15 14 12 17 17 O 1.42897 * 109.47485 * 66.62220 * 16 15 14 18 18 C 1.46497 * 120.00245 * 186.49250 * 14 12 2 19 19 C 1.53000 * 109.47365 * 89.99775 * 18 14 12 20 20 N 1.46496 * 109.47287 * 180.02562 * 19 18 14 21 21 C 1.36942 * 119.99946 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99959 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99953 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99964 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00195 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46715 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47097 * 119.99657 * 25 23 21 28 28 H 1.48495 * 109.47201 * 240.00006 * 25 23 21 29 29 H 1.09000 * 109.47095 * 66.61565 * 1 2 3 30 30 H 1.08990 * 109.47536 * 306.61366 * 1 2 3 31 31 H 1.09005 * 109.46780 * 186.60800 * 1 2 3 32 32 H 1.09008 * 109.47069 * 184.99777 * 4 2 1 33 33 H 1.08993 * 109.46870 * 305.00348 * 4 2 1 34 34 H 1.08003 * 119.98532 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.00841 * 180.25584 * 7 6 5 36 36 H 1.07997 * 120.01638 * 180.02562 * 10 8 7 37 37 H 1.08005 * 119.98217 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47078 * 215.58675 * 15 14 12 39 39 H 1.08996 * 109.47432 * 335.58671 * 15 14 12 40 40 H 1.08998 * 109.47049 * 186.62326 * 16 15 14 41 41 H 1.09003 * 109.47201 * 306.61855 * 16 15 14 42 42 H 0.96700 * 114.00555 * 179.97438 * 17 16 15 43 43 H 1.08998 * 109.46984 * 209.99497 * 18 14 12 44 44 H 1.09000 * 109.46737 * 330.00128 * 18 14 12 45 45 H 1.09007 * 109.47001 * 300.00403 * 19 18 14 46 46 H 1.08999 * 109.47129 * 59.99523 * 19 18 14 47 47 H 0.97000 * 120.00146 * 359.97438 * 20 19 18 48 48 H 0.97004 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2094 -3.1027 7 6 0.0689 0.5075 -4.2250 8 6 0.9101 1.4849 -4.7292 9 9 0.5531 2.1819 -5.8301 10 6 2.1177 1.7469 -4.1046 11 6 2.4817 1.0332 -2.9785 12 6 2.0323 -0.7104 1.2305 13 8 2.5432 -1.8059 1.1321 14 7 1.9138 -0.1282 2.4403 15 6 1.1717 1.1273 2.5795 16 6 -0.2669 0.8249 3.0036 17 8 -0.2692 0.2746 4.3223 18 6 2.5271 -0.7508 3.6161 19 6 3.9534 -0.2241 3.7865 20 7 4.5669 -0.8471 4.9619 21 6 5.8506 -0.5266 5.3152 22 1 6.4108 0.1853 4.7270 23 6 6.4317 -1.1165 6.4292 24 7 5.7488 -1.9836 7.1462 25 14 8.1829 -0.6798 6.9108 26 1 8.7282 0.3115 5.9489 27 1 8.1903 -0.0998 8.2778 28 1 9.0225 -1.9044 6.8881 29 1 -0.3633 0.4079 -0.9433 30 1 -0.3634 0.6128 0.8248 31 1 -0.3633 -1.0209 0.1183 32 1 3.1265 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 -0.2156 -0.9755 -2.7123 35 1 -0.8732 0.3020 -4.7116 36 1 2.7745 2.5093 -4.4967 37 1 3.4239 1.2372 -2.4914 38 1 1.6500 1.7502 3.3353 39 1 1.1661 1.6538 1.6252 40 1 -0.8499 1.7459 2.9932 41 1 -0.7072 0.1085 2.3101 42 1 -1.1503 0.0586 4.6569 43 1 1.9417 -0.5077 4.5028 44 1 2.5527 -1.8323 3.4827 45 1 4.5389 -0.4671 2.8996 46 1 3.9279 0.8574 3.9197 47 1 4.0637 -1.4862 5.4903 48 1 6.1550 -2.3962 7.9245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672716900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:26 Heat of formation + Delta-G solvation = -118.553529 kcal Electronic energy + Delta-G solvation = -29252.129030 eV Core-core repulsion = 25027.877078 eV Total energy + Delta-G solvation = -4224.251952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.86190 -41.49812 -40.07953 -38.17823 -37.14879 -36.01945 -35.73390 -33.45955 -32.09803 -31.69401 -30.51558 -29.06349 -27.53700 -26.01174 -24.44942 -23.95208 -23.86492 -23.01636 -21.81782 -19.81152 -19.13964 -18.72156 -18.58472 -18.05595 -17.45620 -17.32199 -16.67617 -16.54472 -16.36129 -16.25205 -15.78113 -15.41964 -15.32941 -15.12839 -14.90514 -14.74465 -14.51151 -14.42271 -14.36665 -14.05953 -13.61216 -13.38321 -13.09998 -13.04567 -12.96045 -12.84745 -12.75373 -12.51388 -12.38843 -12.27294 -12.10539 -12.06806 -11.90934 -11.87410 -11.78283 -11.00234 -10.78543 -10.69311 -10.01112 -9.67094 -9.49375 -9.07840 -7.98377 -5.29679 0.15749 0.30943 1.45059 1.47608 1.57527 1.62552 1.95145 2.54738 2.63277 3.31458 3.34388 3.38482 3.44904 3.76656 3.85190 3.95935 4.00710 4.05364 4.08312 4.12990 4.19807 4.31014 4.34283 4.36657 4.39557 4.44712 4.51557 4.61629 4.69719 4.75973 4.81070 4.90832 4.94713 5.03433 5.06216 5.07059 5.11620 5.20367 5.21623 5.31283 5.33380 5.41842 5.56353 5.63159 5.95934 6.22769 6.45819 6.99680 7.19125 7.28371 8.00280 8.25876 9.25353 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.002309 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.186051 B =12121.494341 C =13368.397924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.094 4.094 3 H 0.117 0.883 4 C -0.059 4.059 5 C -0.087 4.087 6 C -0.084 4.084 7 C -0.151 4.151 8 C 0.073 3.927 9 F -0.152 7.152 10 C -0.154 4.154 11 C -0.091 4.091 12 C 0.507 3.493 13 O -0.586 6.586 14 N -0.597 5.597 15 C 0.093 3.907 16 C 0.050 3.950 17 O -0.594 6.594 18 C 0.129 3.871 19 C 0.151 3.849 20 N -0.743 5.743 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.980 3.020 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.292 1.292 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.394 0.606 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.001 0.999 46 H 0.027 0.973 47 H 0.374 0.626 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.628 10.872 -22.747 31.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.115 4.115 3 H 0.135 0.865 4 C -0.097 4.097 5 C -0.087 4.087 6 C -0.102 4.102 7 C -0.170 4.170 8 C 0.054 3.946 9 F -0.131 7.131 10 C -0.173 4.173 11 C -0.109 4.109 12 C 0.297 3.703 13 O -0.466 6.466 14 N -0.328 5.328 15 C -0.028 4.028 16 C -0.028 4.028 17 O -0.403 6.403 18 C 0.005 3.995 19 C 0.023 3.977 20 N -0.386 5.386 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.808 3.192 26 H -0.190 1.190 27 H -0.214 1.214 28 H -0.219 1.219 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.243 0.757 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.019 0.981 46 H 0.045 0.955 47 H 0.206 0.794 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.592 10.524 -22.935 31.344 hybrid contribution 0.428 -0.371 0.640 0.854 sum -18.164 10.153 -22.295 30.498 Atomic orbital electron populations 1.22243 0.90769 1.03246 1.05042 1.21294 0.99413 1.00844 0.89918 0.86492 1.20318 1.01328 0.98234 0.89779 1.19874 0.95108 0.96954 0.96749 1.21142 0.95918 0.99065 0.94034 1.21345 1.01021 0.96387 0.98237 1.18007 0.95970 0.94755 0.85895 1.91474 1.92108 1.77987 1.51490 1.21313 0.96077 1.02505 0.97385 1.21129 1.00132 0.94587 0.95074 1.21497 0.77809 0.85532 0.85453 1.90704 1.46558 1.22604 1.86699 1.47858 1.52874 1.25275 1.06819 1.22152 0.91420 0.84846 1.04429 1.23051 0.96326 0.99210 0.84196 1.86550 1.35809 1.85659 1.32251 1.21217 0.92537 0.97086 0.88649 1.20947 0.92630 0.95586 0.88538 1.42414 1.13793 1.51900 1.30509 1.19635 0.90821 1.19816 1.07823 0.90791 1.25675 1.02953 0.99805 0.98404 1.69843 1.38502 1.33499 1.20039 0.84980 0.79141 0.77284 0.77752 1.19014 1.21412 1.21898 0.89129 0.89576 0.92584 0.91649 0.90588 0.83177 0.83156 0.83676 0.84025 0.90216 0.85197 0.89371 0.91835 0.75677 0.89164 0.92993 0.98137 0.95536 0.79409 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.09 71.98 0.58 -1.13 16 2 C -0.09 -1.58 1.87 -11.54 -0.02 -1.60 16 3 H 0.12 1.50 7.04 -2.38 -0.02 1.48 16 4 C -0.06 -1.05 4.15 29.85 0.12 -0.93 16 5 C -0.09 -1.21 4.72 -19.86 -0.09 -1.30 16 6 C -0.08 -0.97 7.86 22.26 0.17 -0.79 16 7 C -0.15 -1.84 10.03 22.31 0.22 -1.62 16 8 C 0.07 1.11 7.30 22.38 0.16 1.27 16 9 F -0.15 -2.67 17.27 44.97 0.78 -1.90 16 10 C -0.15 -2.13 10.03 22.31 0.22 -1.90 16 11 C -0.09 -1.24 9.70 22.26 0.22 -1.03 16 12 C 0.51 14.32 6.94 87.66 0.61 14.93 16 13 O -0.59 -22.77 15.61 -3.03 -0.05 -22.82 16 14 N -0.60 -16.53 2.47 -821.81 -2.03 -18.56 16 15 C 0.09 1.67 5.33 86.38 0.46 2.13 16 16 C 0.05 0.69 6.37 71.98 0.46 1.15 16 17 O -0.59 -11.92 12.06 -148.98 -1.80 -13.71 16 18 C 0.13 4.86 5.42 86.38 0.47 5.33 16 19 C 0.15 6.78 6.58 86.38 0.57 7.34 16 20 N -0.74 -41.21 5.60 -343.45 -1.92 -43.14 16 21 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 22 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 24 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 25 Si 0.98 47.65 29.55 68.60 2.03 49.67 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.09 0.70 5.83 -2.39 -0.01 0.69 16 30 H 0.09 0.69 3.63 -2.39 -0.01 0.68 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 1.41 8.06 -2.38 -0.02 1.39 16 33 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 34 H 0.15 1.21 7.98 -2.91 -0.02 1.18 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.08 1.63 8.11 -2.39 -0.02 1.61 16 39 H 0.13 1.35 5.38 -2.39 -0.01 1.34 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.78 5.87 -2.39 -0.01 0.76 16 42 H 0.39 4.39 9.12 -74.06 -0.68 3.71 16 43 H 0.09 3.39 6.65 -2.39 -0.02 3.38 16 44 H 0.05 2.25 7.34 -2.39 -0.02 2.24 16 45 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.37 21.92 7.67 -92.71 -0.71 21.21 16 48 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -81.22 390.41 2.37 -78.86 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.39 Total: 29.08 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.46 Total: 3.78 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -3.67 Total: -122.96 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.84 Total: -36.54 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -81.22 2.37 -78.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672716900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.695 kcal (2) G-P(sol) polarization free energy of solvation -81.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds