Wall clock time and date at job start Tue Mar 31 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46964 * 2 1 4 4 C 1.52996 * 109.46916 * 119.99916 * 2 1 3 5 5 C 1.50700 * 109.47401 * 295.00096 * 4 2 1 6 6 C 1.38254 * 119.97214 * 269.73110 * 5 4 2 7 7 C 1.38202 * 120.02154 * 179.72402 * 6 5 4 8 8 C 1.38461 * 119.97202 * 0.56878 * 7 6 5 9 9 F 1.35104 * 120.02357 * 179.68414 * 8 7 6 10 10 C 1.38453 * 119.95260 * 359.70077 * 8 7 6 11 11 C 1.38200 * 119.97508 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47215 * 239.99760 * 2 1 3 13 13 O 1.21279 * 120.00288 * 270.50522 * 12 2 1 14 14 N 1.34781 * 119.99652 * 90.49707 * 12 2 1 15 15 C 1.46496 * 119.99787 * 174.12527 * 14 12 2 16 16 C 1.53000 * 109.47469 * 264.81972 * 15 14 12 17 17 O 1.42901 * 109.47199 * 62.57277 * 16 15 14 18 18 C 1.46500 * 120.00183 * 354.13383 * 14 12 2 19 19 C 1.53004 * 109.46724 * 263.36159 * 18 14 12 20 20 N 1.46503 * 109.46771 * 174.43640 * 19 18 14 21 21 C 1.36938 * 119.99869 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99927 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99841 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00100 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99645 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47163 * 60.00489 * 25 23 21 27 27 H 1.48504 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47193 * 300.00101 * 25 23 21 29 29 H 1.08999 * 109.47189 * 52.03826 * 1 2 3 30 30 H 1.09001 * 109.47081 * 172.04013 * 1 2 3 31 31 H 1.09002 * 109.47269 * 292.03622 * 1 2 3 32 32 H 1.09001 * 109.47458 * 55.00477 * 4 2 1 33 33 H 1.09005 * 109.47049 * 175.00225 * 4 2 1 34 34 H 1.07990 * 119.98789 * 359.97349 * 6 5 4 35 35 H 1.07997 * 120.01332 * 180.29822 * 7 6 5 36 36 H 1.08007 * 120.01846 * 179.97438 * 10 8 7 37 37 H 1.08003 * 119.99108 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.47147 * 24.81954 * 15 14 12 39 39 H 1.09003 * 109.47352 * 144.81693 * 15 14 12 40 40 H 1.09001 * 109.46946 * 182.57152 * 16 15 14 41 41 H 1.09001 * 109.46902 * 302.57176 * 16 15 14 42 42 H 0.96701 * 114.00036 * 180.02562 * 17 16 15 43 43 H 1.08995 * 109.46810 * 23.36193 * 18 14 12 44 44 H 1.09000 * 109.47251 * 143.35825 * 18 14 12 45 45 H 1.09002 * 109.47084 * 294.43127 * 19 18 14 46 46 H 1.08992 * 109.47297 * 54.43470 * 19 18 14 47 47 H 0.97002 * 120.00231 * 359.97438 * 20 19 18 48 48 H 0.96999 * 120.00237 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.4844 1.0291 2.9821 7 6 2.1173 1.7474 4.1043 8 6 0.9098 1.4850 4.7291 9 9 0.5528 2.1821 5.8299 10 6 0.0688 0.5074 4.2252 11 6 0.4355 -0.2057 3.0996 12 6 2.0324 -0.7104 -1.2304 13 8 2.2258 -1.9074 -1.2031 14 7 2.2666 -0.0156 -2.3613 15 6 2.8754 -0.6799 -3.5163 16 6 4.3877 -0.4484 -3.4993 17 8 4.9468 -1.0389 -2.3242 18 6 1.9124 1.4040 -2.4355 19 6 0.5437 1.5539 -3.1028 20 7 0.1298 2.9585 -3.0578 21 6 -1.0701 3.3364 -3.5987 22 1 -1.7115 2.5988 -4.0581 23 6 -1.4625 4.6672 -3.5556 24 7 -0.6811 5.5659 -2.9954 25 14 -3.0997 5.1824 -4.2929 26 1 -4.2010 4.4613 -3.6055 27 1 -3.2819 6.6460 -4.1196 28 1 -3.1176 4.8497 -5.7400 29 1 -0.3633 0.6321 -0.8102 30 1 -0.3633 -1.0178 -0.1423 31 1 -0.3634 0.3856 0.9526 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 3.4284 1.2300 2.4976 35 1 2.7738 2.5100 4.4963 36 1 -0.8731 0.3015 4.7120 37 1 -0.2202 -0.9686 2.7065 38 1 2.6711 -1.7496 -3.4696 39 1 2.4554 -0.2696 -4.4347 40 1 4.8350 -0.9038 -4.3828 41 1 4.5913 0.6225 -3.4999 42 1 5.9046 -0.9302 -2.2470 43 1 1.8739 1.8218 -1.4295 44 1 2.6624 1.9355 -3.0212 45 1 0.6078 1.2271 -4.1407 46 1 -0.1873 0.9426 -2.5738 47 1 0.7057 3.6209 -2.6449 48 1 -0.9551 6.4959 -2.9656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672716901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:31 Heat of formation + Delta-G solvation = -97.319541 kcal Electronic energy + Delta-G solvation = -29774.027005 eV Core-core repulsion = 25550.695828 eV Total energy + Delta-G solvation = -4223.331177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.96766 -40.27700 -39.18145 -37.05482 -35.94604 -34.80692 -34.13466 -31.46862 -31.29934 -30.75618 -29.36647 -27.48446 -26.63307 -24.20882 -23.82231 -23.13216 -22.22468 -21.66661 -20.83942 -18.52180 -17.79634 -17.71928 -17.25920 -17.01490 -16.44680 -16.17058 -15.66704 -15.54187 -15.22108 -14.66772 -14.48580 -14.21528 -14.19716 -13.80241 -13.69861 -13.65051 -13.35998 -13.32793 -13.26095 -12.93604 -12.48615 -12.18757 -12.05299 -11.99162 -11.58818 -11.47743 -11.39652 -11.29082 -11.16883 -10.94586 -10.92420 -10.81121 -10.56591 -10.19150 -10.11270 -9.80475 -9.42013 -9.20072 -8.92876 -8.62697 -8.45451 -7.01517 -5.83132 -3.12986 1.00966 1.10528 2.88699 3.09371 3.40695 3.45547 3.46087 3.47716 4.15831 4.20755 4.45874 4.56708 4.58375 4.76026 4.86648 4.94930 5.05442 5.10381 5.12261 5.15085 5.15900 5.26829 5.31680 5.45001 5.52950 5.58888 5.64772 5.70477 5.78348 5.82743 5.85792 5.90205 5.92359 5.99820 6.02978 6.07961 6.10468 6.19157 6.27492 6.45864 6.52040 6.68213 6.77374 6.84965 7.55435 7.58889 7.64636 8.34828 8.42456 9.46536 10.00729 10.35540 11.39366 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006588 B = 0.003919 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4249.066123 B = 7143.295856 C =10419.627439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.061 4.061 5 C -0.085 4.085 6 C -0.087 4.087 7 C -0.151 4.151 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.152 4.152 11 C -0.085 4.085 12 C 0.532 3.468 13 O -0.539 6.539 14 N -0.603 5.603 15 C 0.112 3.888 16 C 0.060 3.940 17 O -0.560 6.560 18 C 0.096 3.904 19 C 0.137 3.863 20 N -0.730 5.730 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.372 0.628 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.020 0.980 46 H 0.026 0.974 47 H 0.384 0.616 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 -11.872 9.218 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.126 4.126 3 H 0.113 0.887 4 C -0.099 4.099 5 C -0.085 4.085 6 C -0.105 4.105 7 C -0.169 4.169 8 C 0.071 3.929 9 F -0.122 7.122 10 C -0.171 4.171 11 C -0.103 4.103 12 C 0.320 3.680 13 O -0.416 6.416 14 N -0.336 5.336 15 C -0.011 4.011 16 C -0.019 4.019 17 O -0.364 6.364 18 C -0.027 4.027 19 C 0.009 3.991 20 N -0.375 5.375 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.217 0.783 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.704 -12.644 9.285 18.446 hybrid contribution -0.203 1.187 -0.354 1.255 sum 9.501 -11.457 8.931 17.358 Atomic orbital electron populations 1.21970 0.92194 1.02801 1.04016 1.21293 0.98434 1.00656 0.92182 0.88742 1.20424 1.01658 0.98424 0.89345 1.19955 0.94553 0.97085 0.96914 1.20947 0.99818 0.94699 0.95006 1.21133 0.96122 1.02059 0.97630 1.17732 0.95291 0.94027 0.85839 1.91492 1.92016 1.77716 1.50966 1.21143 1.00433 0.97113 0.98371 1.20980 0.96000 0.99158 0.94124 1.20427 0.76292 0.87154 0.84109 1.90641 1.52152 1.14705 1.84053 1.47738 1.61356 1.11034 1.13439 1.21494 0.90445 1.00117 0.89041 1.22618 0.94836 0.96823 0.87636 1.86643 1.25790 1.80243 1.43748 1.21925 0.98015 0.80027 1.02770 1.21067 0.92279 0.88523 0.97280 1.42204 1.21970 1.02244 1.71047 1.19132 0.95224 0.92437 1.30512 0.91241 1.24723 0.98634 0.95907 1.01329 1.69634 1.37449 1.01619 1.49347 0.86276 0.83639 0.77391 0.78915 1.21186 1.21628 1.21238 0.90420 0.92308 0.91175 0.89734 0.90489 0.84996 0.84824 0.84824 0.84830 0.89012 0.89076 0.93045 0.93484 0.78260 0.89591 0.90693 0.96211 0.95595 0.78257 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.99 37.16 0.33 -1.70 16 2 C -0.10 -1.36 2.02 -91.77 -0.19 -1.54 16 3 H 0.09 1.22 5.95 -51.93 -0.31 0.91 16 4 C -0.06 -0.70 4.36 -27.89 -0.12 -0.82 16 5 C -0.08 -0.92 4.73 -104.61 -0.49 -1.41 16 6 C -0.09 -0.90 9.70 -39.59 -0.38 -1.28 16 7 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 8 C 0.09 1.05 7.30 -39.42 -0.29 0.76 16 9 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 10 C -0.15 -1.61 10.03 -39.52 -0.40 -2.01 16 11 C -0.08 -0.88 7.84 -39.59 -0.31 -1.19 16 12 C 0.53 8.03 6.38 -10.98 -0.07 7.96 16 13 O -0.54 -9.57 15.77 5.56 0.09 -9.48 16 14 N -0.60 -8.49 2.41 -173.69 -0.42 -8.91 16 15 C 0.11 1.40 5.94 -4.04 -0.02 1.38 16 16 C 0.06 0.62 7.40 37.16 0.27 0.90 16 17 O -0.56 -6.57 13.26 -35.23 -0.47 -7.04 16 18 C 0.10 1.42 5.54 -4.04 -0.02 1.40 16 19 C 0.14 2.56 6.39 -4.04 -0.03 2.53 16 20 N -0.73 -17.31 5.60 -59.91 -0.34 -17.65 16 21 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 25 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 H 0.08 1.20 5.76 -51.93 -0.30 0.90 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.87 5.71 -51.93 -0.30 0.57 16 32 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 33 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.13 1.19 7.93 -52.48 -0.42 0.77 16 38 H 0.09 1.27 7.21 -51.93 -0.37 0.90 16 39 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.37 2.61 9.12 45.56 0.42 3.03 16 43 H 0.09 1.26 5.50 -51.93 -0.29 0.97 16 44 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 45 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 46 H 0.03 0.51 5.99 -51.93 -0.31 0.20 16 47 H 0.38 9.49 7.67 -40.82 -0.31 9.18 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -33.17 396.19 -8.14 -41.32 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.36 Total: 11.24 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.36 Total: -4.06 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.03 Total: -53.06 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.38 Total: -16.52 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.17 -8.14 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672716901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.003 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds