Wall clock time and date at job start Tue Mar 31 2020 22:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46964 * 2 1 4 4 C 1.52996 * 109.46916 * 119.99916 * 2 1 3 5 5 C 1.50700 * 109.47401 * 295.00096 * 4 2 1 6 6 C 1.38254 * 119.97214 * 269.73110 * 5 4 2 7 7 C 1.38202 * 120.02154 * 179.72402 * 6 5 4 8 8 C 1.38461 * 119.97202 * 0.56878 * 7 6 5 9 9 F 1.35104 * 120.02357 * 179.68414 * 8 7 6 10 10 C 1.38453 * 119.95260 * 359.70077 * 8 7 6 11 11 C 1.38200 * 119.97508 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47215 * 239.99760 * 2 1 3 13 13 O 1.21279 * 120.00288 * 270.50522 * 12 2 1 14 14 N 1.34781 * 119.99652 * 90.49707 * 12 2 1 15 15 C 1.46496 * 119.99787 * 174.12527 * 14 12 2 16 16 C 1.53000 * 109.47469 * 264.81972 * 15 14 12 17 17 O 1.42901 * 109.47199 * 62.57277 * 16 15 14 18 18 C 1.46500 * 120.00183 * 354.13383 * 14 12 2 19 19 C 1.53004 * 109.46724 * 263.36159 * 18 14 12 20 20 N 1.46503 * 109.46771 * 174.43640 * 19 18 14 21 21 C 1.36938 * 119.99869 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99927 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99841 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00100 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99645 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47163 * 60.00489 * 25 23 21 27 27 H 1.48504 * 109.47158 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47193 * 300.00101 * 25 23 21 29 29 H 1.08999 * 109.47189 * 52.03826 * 1 2 3 30 30 H 1.09001 * 109.47081 * 172.04013 * 1 2 3 31 31 H 1.09002 * 109.47269 * 292.03622 * 1 2 3 32 32 H 1.09001 * 109.47458 * 55.00477 * 4 2 1 33 33 H 1.09005 * 109.47049 * 175.00225 * 4 2 1 34 34 H 1.07990 * 119.98789 * 359.97349 * 6 5 4 35 35 H 1.07997 * 120.01332 * 180.29822 * 7 6 5 36 36 H 1.08007 * 120.01846 * 179.97438 * 10 8 7 37 37 H 1.08003 * 119.99108 * 179.97438 * 11 10 8 38 38 H 1.09004 * 109.47147 * 24.81954 * 15 14 12 39 39 H 1.09003 * 109.47352 * 144.81693 * 15 14 12 40 40 H 1.09001 * 109.46946 * 182.57152 * 16 15 14 41 41 H 1.09001 * 109.46902 * 302.57176 * 16 15 14 42 42 H 0.96701 * 114.00036 * 180.02562 * 17 16 15 43 43 H 1.08995 * 109.46810 * 23.36193 * 18 14 12 44 44 H 1.09000 * 109.47251 * 143.35825 * 18 14 12 45 45 H 1.09002 * 109.47084 * 294.43127 * 19 18 14 46 46 H 1.08992 * 109.47297 * 54.43470 * 19 18 14 47 47 H 0.97002 * 120.00231 * 359.97438 * 20 19 18 48 48 H 0.96999 * 120.00237 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.4844 1.0291 2.9821 7 6 2.1173 1.7474 4.1043 8 6 0.9098 1.4850 4.7291 9 9 0.5528 2.1821 5.8299 10 6 0.0688 0.5074 4.2252 11 6 0.4355 -0.2057 3.0996 12 6 2.0324 -0.7104 -1.2304 13 8 2.2258 -1.9074 -1.2031 14 7 2.2666 -0.0156 -2.3613 15 6 2.8754 -0.6799 -3.5163 16 6 4.3877 -0.4484 -3.4993 17 8 4.9468 -1.0389 -2.3242 18 6 1.9124 1.4040 -2.4355 19 6 0.5437 1.5539 -3.1028 20 7 0.1298 2.9585 -3.0578 21 6 -1.0701 3.3364 -3.5987 22 1 -1.7115 2.5988 -4.0581 23 6 -1.4625 4.6672 -3.5556 24 7 -0.6811 5.5659 -2.9954 25 14 -3.0997 5.1824 -4.2929 26 1 -4.2010 4.4613 -3.6055 27 1 -3.2819 6.6460 -4.1196 28 1 -3.1176 4.8497 -5.7400 29 1 -0.3633 0.6321 -0.8102 30 1 -0.3633 -1.0178 -0.1423 31 1 -0.3634 0.3856 0.9526 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 3.4284 1.2300 2.4976 35 1 2.7738 2.5100 4.4963 36 1 -0.8731 0.3015 4.7120 37 1 -0.2202 -0.9686 2.7065 38 1 2.6711 -1.7496 -3.4696 39 1 2.4554 -0.2696 -4.4347 40 1 4.8350 -0.9038 -4.3828 41 1 4.5913 0.6225 -3.4999 42 1 5.9046 -0.9302 -2.2470 43 1 1.8739 1.8218 -1.4295 44 1 2.6624 1.9355 -3.0212 45 1 0.6078 1.2271 -4.1407 46 1 -0.1873 0.9426 -2.5738 47 1 0.7057 3.6209 -2.6449 48 1 -0.9551 6.4959 -2.9656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672716901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:30 Heat of formation + Delta-G solvation = -118.633012 kcal Electronic energy + Delta-G solvation = -29774.951227 eV Core-core repulsion = 25550.695828 eV Total energy + Delta-G solvation = -4224.255399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87455 -41.38859 -40.07067 -38.02866 -37.29480 -35.81287 -35.76044 -33.22950 -32.11046 -31.77652 -30.48357 -28.98768 -27.60224 -25.65088 -25.17131 -23.95162 -23.37525 -23.02124 -21.77287 -19.84748 -19.00461 -18.66636 -18.50829 -18.21924 -17.37052 -17.31628 -16.72777 -16.56079 -16.35237 -16.20065 -15.59796 -15.42011 -15.16868 -15.10527 -14.95663 -14.87595 -14.50164 -14.43635 -14.27541 -14.16943 -13.54091 -13.23522 -13.15035 -13.05291 -12.90269 -12.84876 -12.77790 -12.55332 -12.43867 -12.27433 -12.15612 -12.06576 -11.85625 -11.82615 -11.69796 -10.96779 -10.87817 -10.56513 -10.01594 -9.64963 -9.49212 -8.98987 -7.93632 -5.22298 0.15401 0.30461 1.50033 1.51490 1.57558 1.70324 1.97926 2.58270 2.63371 3.31225 3.36716 3.40943 3.51707 3.74232 3.87887 3.93311 3.98904 4.03351 4.08881 4.15664 4.23362 4.30290 4.33477 4.36793 4.39627 4.41510 4.55770 4.64100 4.68704 4.77672 4.83211 4.86788 4.93435 5.01779 5.02617 5.08138 5.10924 5.18847 5.20046 5.30059 5.39529 5.50769 5.60277 5.63030 5.95571 6.27697 6.42044 6.96183 7.24767 7.36116 8.08191 8.32933 9.29003 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006588 B = 0.003919 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4249.066123 B = 7143.295856 C =10419.627439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.050 4.050 5 C -0.090 4.090 6 C -0.089 4.089 7 C -0.155 4.155 8 C 0.070 3.930 9 F -0.152 7.152 10 C -0.156 4.156 11 C -0.089 4.089 12 C 0.529 3.471 13 O -0.567 6.567 14 N -0.600 5.600 15 C 0.103 3.897 16 C 0.064 3.936 17 O -0.586 6.586 18 C 0.111 3.889 19 C 0.140 3.860 20 N -0.738 5.738 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.066 4.066 24 N -0.964 5.964 25 Si 0.966 3.034 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.279 1.279 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.377 0.623 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -12.237 8.943 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 H 0.116 0.884 4 C -0.088 4.088 5 C -0.090 4.090 6 C -0.107 4.107 7 C -0.174 4.174 8 C 0.051 3.949 9 F -0.130 7.130 10 C -0.175 4.175 11 C -0.107 4.107 12 C 0.318 3.682 13 O -0.446 6.446 14 N -0.331 5.331 15 C -0.019 4.019 16 C -0.015 4.015 17 O -0.393 6.393 18 C -0.012 4.012 19 C 0.013 3.987 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.259 4.259 24 N -0.614 5.614 25 Si 0.796 3.204 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.205 1.205 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.240 0.760 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.210 0.790 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.195 -13.043 8.991 18.839 hybrid contribution -0.321 1.208 -0.289 1.283 sum 9.875 -11.834 8.702 17.700 Atomic orbital electron populations 1.21886 0.92464 1.02342 1.03577 1.21280 0.98036 1.00740 0.92068 0.88422 1.20298 1.01616 0.98043 0.88851 1.19971 0.94961 0.97333 0.96781 1.21166 1.00413 0.94276 0.94869 1.21352 0.96054 1.02363 0.97600 1.18018 0.96118 0.94659 0.86058 1.91468 1.92154 1.77984 1.51432 1.21346 1.00936 0.96764 0.98426 1.21165 0.96113 0.99363 0.94016 1.20765 0.75776 0.86866 0.84770 1.90627 1.53497 1.15911 1.84592 1.47763 1.60931 1.10643 1.13807 1.21700 0.92280 0.99072 0.88870 1.22591 0.93186 0.97451 0.88226 1.86589 1.27748 1.80563 1.44396 1.21686 0.96105 0.80621 1.02807 1.21141 0.94266 0.85758 0.97547 1.42316 1.21116 1.04092 1.70638 1.19479 0.96145 0.92544 1.29490 0.91055 1.25436 1.01768 0.96140 1.02524 1.69770 1.39041 1.01535 1.51098 0.85328 0.80171 0.76520 0.78430 1.20650 1.22151 1.20490 0.92672 0.92220 0.90203 0.90165 0.90322 0.83312 0.83369 0.83428 0.83528 0.90630 0.87838 0.90658 0.92693 0.76037 0.89206 0.89294 0.96164 0.96053 0.79014 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.99 71.98 0.65 -3.13 16 2 C -0.10 -2.50 2.02 -11.54 -0.02 -2.52 16 3 H 0.10 2.38 5.95 -2.39 -0.01 2.37 16 4 C -0.05 -1.10 4.36 29.85 0.13 -0.97 16 5 C -0.09 -1.83 4.73 -19.86 -0.09 -1.92 16 6 C -0.09 -1.71 9.70 22.26 0.22 -1.49 16 7 C -0.16 -3.11 10.03 22.31 0.22 -2.88 16 8 C 0.07 1.58 7.30 22.37 0.16 1.74 16 9 F -0.15 -3.69 17.27 44.97 0.78 -2.91 16 10 C -0.16 -3.15 10.03 22.31 0.22 -2.93 16 11 C -0.09 -1.73 7.84 22.26 0.17 -1.55 16 12 C 0.53 15.52 6.38 87.66 0.56 16.07 16 13 O -0.57 -19.87 15.77 -3.03 -0.05 -19.92 16 14 N -0.60 -16.16 2.41 -821.81 -1.98 -18.14 16 15 C 0.10 2.44 5.94 86.38 0.51 2.95 16 16 C 0.06 1.19 7.40 71.98 0.53 1.73 16 17 O -0.59 -12.70 13.26 -148.98 -1.98 -14.67 16 18 C 0.11 3.13 5.54 86.38 0.48 3.61 16 19 C 0.14 5.11 6.39 86.38 0.55 5.66 16 20 N -0.74 -34.62 5.60 -343.44 -1.92 -36.54 16 21 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -3.62 5.50 84.86 0.47 -3.16 16 24 N -0.96 -56.38 13.06 21.65 0.28 -56.10 16 25 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H 0.05 1.68 5.76 -2.39 -0.01 1.67 16 30 H 0.06 1.51 8.13 -2.39 -0.02 1.50 16 31 H 0.08 1.90 5.71 -2.39 -0.01 1.88 16 32 H 0.08 1.83 7.96 -2.39 -0.02 1.81 16 33 H 0.08 1.69 8.08 -2.38 -0.02 1.68 16 34 H 0.15 2.27 8.06 -2.92 -0.02 2.25 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.15 2.40 7.93 -2.91 -0.02 2.38 16 38 H 0.08 2.05 7.21 -2.38 -0.02 2.03 16 39 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 42 H 0.39 4.71 9.12 -74.06 -0.68 4.03 16 43 H 0.09 2.50 5.50 -2.39 -0.01 2.49 16 44 H 0.09 2.31 8.05 -2.39 -0.02 2.29 16 45 H 0.02 0.75 8.13 -2.39 -0.02 0.73 16 46 H 0.02 0.82 5.99 -2.39 -0.01 0.81 16 47 H 0.38 18.55 7.67 -92.71 -0.71 17.84 16 48 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -69.71 396.19 2.37 -67.34 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.39 Total: 35.24 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.60 Total: -0.99 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.62 Total: -110.78 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -2.02 Total: -34.59 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.71 2.37 -67.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672716901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.294 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds