Wall clock time and date at job start Tue Mar 31 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46612 * 2 1 4 4 N 1.46494 * 109.47361 * 119.99853 * 2 1 3 5 5 C 1.34783 * 120.00371 * 275.00270 * 4 2 1 6 6 O 1.21280 * 119.99674 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00257 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47036 * 179.97438 * 7 5 4 9 9 C 1.36127 * 120.17386 * 264.99852 * 8 7 5 10 10 C 1.39334 * 120.98660 * 179.97438 * 9 8 7 11 11 C 1.36121 * 120.99105 * 0.02562 * 10 9 8 12 12 C 1.40505 * 119.65594 * 359.97420 * 11 10 9 13 13 C 1.40547 * 121.29358 * 179.72903 * 12 11 10 14 14 C 1.36091 * 119.65229 * 179.77585 * 13 12 11 15 15 C 1.39378 * 120.99195 * 0.50990 * 14 13 12 16 16 C 1.36088 * 120.99903 * 359.73757 * 15 14 13 17 17 C 1.40499 * 120.17169 * 84.95842 * 8 7 5 18 18 C 1.52995 * 109.47020 * 240.00251 * 2 1 3 19 19 C 1.53948 * 113.74235 * 158.73858 * 18 2 1 20 20 N 1.47809 * 86.03943 * 222.08309 * 19 18 2 21 21 C 1.36931 * 134.45913 * 204.64483 * 20 19 18 22 22 H 1.08000 * 120.00408 * 179.86272 * 21 20 19 23 23 C 1.38816 * 119.99655 * 359.86553 * 21 20 19 24 24 N 1.31613 * 120.00489 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99767 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47398 * 89.99773 * 25 23 21 27 27 H 1.48497 * 109.47112 * 210.00169 * 25 23 21 28 28 H 1.48508 * 109.47063 * 329.99656 * 25 23 21 29 29 C 1.47584 * 91.04951 * 24.54826 * 20 19 18 30 30 H 1.08994 * 109.46999 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.46612 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46997 * 299.99671 * 1 2 3 33 33 H 0.96999 * 120.00276 * 95.00224 * 4 2 1 34 34 H 1.09007 * 109.46683 * 60.00224 * 7 5 4 35 35 H 1.08996 * 109.47347 * 300.00070 * 7 5 4 36 36 H 1.07995 * 119.50629 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.50051 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.17689 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.17054 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.50404 * 180.25240 * 14 13 12 41 41 H 1.08008 * 119.50499 * 179.75791 * 15 14 13 42 42 H 1.07994 * 120.17632 * 180.02562 * 16 15 14 43 43 H 1.09000 * 112.94336 * 290.32949 * 18 2 1 44 44 H 1.09005 * 113.76530 * 336.34986 * 19 18 2 45 45 H 1.08995 * 113.77002 * 107.74016 * 19 18 2 46 46 H 0.97001 * 120.00301 * 180.02562 * 24 23 21 47 47 H 1.09003 * 113.77090 * 221.15161 * 29 20 19 48 48 H 1.09003 * 113.86887 * 89.77019 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1472 -0.0182 2.3572 6 8 1.8591 1.1586 2.4115 7 6 2.6490 -0.7287 3.5877 8 6 2.7004 0.2398 4.7411 9 6 3.8600 0.8873 5.0398 10 6 3.9264 1.7865 6.1020 11 6 2.8339 2.0434 6.8722 12 6 1.6192 1.3942 6.5944 13 6 0.4715 1.6294 7.3708 14 6 -0.6890 0.9856 7.0691 15 6 -0.7556 0.0864 6.0063 16 6 0.3365 -0.1702 5.2359 17 6 1.5514 0.4799 5.5133 18 6 2.0400 -0.7212 -1.2492 19 6 3.4848 -0.3519 -1.6317 20 7 2.9979 -0.3175 -3.0269 21 6 3.5874 -0.4755 -4.2526 22 1 2.9927 -0.4036 -5.1513 23 6 4.9496 -0.7281 -4.3402 24 7 5.6744 -0.8163 -3.2451 25 14 5.7541 -0.9430 -6.0124 26 1 6.2189 0.3762 -6.5113 27 1 6.9138 -1.8623 -5.8893 28 1 4.7690 -1.5138 -6.9659 29 6 1.6214 -0.0471 -2.5684 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2492 -1.6317 1.1526 34 1 3.6482 -1.1212 3.3985 35 1 1.9762 -1.5505 3.8326 36 1 4.7416 0.7011 4.4445 37 1 4.8590 2.2866 6.3179 38 1 2.9003 2.7426 7.6926 39 1 0.5092 2.3204 8.1999 40 1 -1.5706 1.1713 7.6647 41 1 -1.6880 -0.4142 5.7906 42 1 0.2699 -0.8692 4.4154 43 1 1.8529 -1.7947 -1.2263 44 1 3.8047 0.6192 -1.2539 45 1 4.2071 -1.1445 -1.4367 46 1 6.6263 -0.9925 -3.3063 47 1 0.8586 -0.5968 -3.1199 48 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675360296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:02 Heat of formation + Delta-G solvation = 55.437178 kcal Electronic energy + Delta-G solvation = -28338.842343 eV Core-core repulsion = 24552.904419 eV Total energy + Delta-G solvation = -3785.937924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77691 -39.54388 -38.04333 -36.63576 -34.77088 -33.85583 -32.20959 -30.88943 -30.41002 -29.90814 -27.55347 -27.46141 -24.81713 -23.97093 -23.45468 -23.10008 -21.93575 -20.80153 -20.15577 -18.97854 -17.67055 -17.15734 -16.91209 -16.66935 -16.42060 -15.95519 -15.13964 -14.88017 -14.53832 -14.36507 -14.11347 -13.86771 -13.62348 -13.56345 -13.46216 -13.26493 -13.04444 -12.80984 -12.44006 -12.24824 -12.02250 -11.87201 -11.64042 -11.43212 -11.31031 -11.28485 -11.04994 -10.91863 -10.88678 -10.70572 -10.35515 -10.05756 -9.94222 -9.74181 -9.59175 -9.38310 -8.79436 -8.76000 -8.69951 -7.95888 -6.86953 -5.76365 -3.08387 0.40227 0.92705 1.91728 2.80486 2.86803 3.38560 3.40172 3.43942 3.45673 4.03494 4.33966 4.45447 4.61997 4.68969 4.75525 4.84936 4.94361 5.01769 5.08081 5.17708 5.23564 5.25135 5.29039 5.31347 5.39006 5.40466 5.54443 5.62796 5.67781 5.82004 5.84278 5.95550 5.98528 6.04880 6.09310 6.12651 6.26846 6.30675 6.37479 6.41885 6.42286 6.52457 6.60533 6.68602 6.70295 6.83678 6.89979 7.23818 7.37262 7.56212 7.71707 7.98609 8.42556 9.05200 9.71427 10.60985 11.40780 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.002269 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.411236 B =12338.042041 C =13297.719660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.719 5.719 5 C 0.513 3.487 6 O -0.533 6.533 7 C -0.109 4.109 8 C -0.047 4.047 9 C -0.105 4.105 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.051 4.051 13 C -0.108 4.108 14 C -0.119 4.119 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.034 4.034 18 C -0.146 4.146 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.399 0.601 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.253 0.747 47 H 0.044 0.956 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -0.423 23.167 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.370 5.370 5 C 0.299 3.701 6 O -0.409 6.409 7 C -0.149 4.149 8 C -0.047 4.047 9 C -0.123 4.123 10 C -0.128 4.128 11 C -0.130 4.130 12 C -0.051 4.051 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.138 4.138 16 C -0.118 4.118 17 C -0.034 4.034 18 C -0.166 4.166 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.003 3.997 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.040 0.368 22.950 25.053 hybrid contribution 0.674 -0.384 -1.027 1.287 sum -9.366 -0.016 21.923 23.840 Atomic orbital electron populations 1.22124 0.95819 1.01624 1.02031 1.21065 0.93356 0.97557 0.83386 0.89600 1.46099 1.67203 1.14066 1.09641 1.20370 0.78002 0.87490 0.84267 1.90726 1.49480 1.15768 1.84900 1.20739 1.04452 0.98103 0.91560 1.19106 0.93065 0.97609 0.94958 1.20745 0.97837 0.96366 0.97362 1.20810 0.98722 0.97930 0.95346 1.20982 0.92185 0.99713 1.00098 1.18047 0.94373 0.97062 0.95646 1.20994 0.92376 0.99885 0.99309 1.20818 0.97922 0.97186 0.97799 1.20822 0.98561 0.98619 0.95770 1.21021 0.92283 0.99443 0.99079 1.17846 0.93628 0.96768 0.95152 1.23807 1.00879 0.99603 0.92309 1.22286 0.91387 0.98451 0.83275 1.46009 1.03315 1.82579 1.02029 1.19030 0.91449 1.41486 0.82992 0.90291 1.24783 0.96053 1.02449 0.97274 1.69813 1.06049 1.55295 1.25759 0.86128 0.79006 0.77549 0.83136 1.21634 1.21640 1.20624 1.22490 0.89630 0.96612 0.90951 0.91522 0.92799 0.92852 0.76703 0.87511 0.87963 0.85810 0.85895 0.85749 0.85763 0.86174 0.86130 0.85912 0.89439 0.95693 0.91066 0.93693 0.93803 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.31 37.16 0.35 -1.76 16 2 C 0.15 2.31 2.38 -67.93 -0.16 2.15 16 3 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 4 N -0.72 -9.36 5.08 -53.81 -0.27 -9.64 16 5 C 0.51 7.10 7.79 -10.99 -0.09 7.02 16 6 O -0.53 -9.62 15.70 5.56 0.09 -9.53 16 7 C -0.11 -1.12 5.23 -29.04 -0.15 -1.27 16 8 C -0.05 -0.57 4.38 -104.53 -0.46 -1.02 16 9 C -0.11 -1.21 9.57 -39.93 -0.38 -1.59 16 10 C -0.11 -1.14 9.95 -39.93 -0.40 -1.54 16 11 C -0.11 -1.15 9.77 -39.49 -0.39 -1.54 16 12 C -0.05 -0.60 5.74 -106.83 -0.61 -1.21 16 13 C -0.11 -1.05 9.77 -39.48 -0.39 -1.43 16 14 C -0.12 -1.09 9.95 -39.93 -0.40 -1.49 16 15 C -0.12 -1.16 9.95 -39.93 -0.40 -1.56 16 16 C -0.10 -1.11 9.28 -39.48 -0.37 -1.48 16 17 C -0.03 -0.42 5.74 -106.83 -0.61 -1.03 16 18 C -0.15 -2.58 3.47 -89.69 -0.31 -2.90 16 19 C 0.17 3.98 7.08 -2.84 -0.02 3.96 16 20 N -0.61 -15.78 3.70 -177.68 -0.66 -16.44 16 21 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.41 11.39 55.49 0.63 -26.78 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.61 7.64 -2.97 -0.02 2.59 16 30 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.21 8.60 -40.82 -0.35 3.86 16 34 H 0.11 0.91 8.04 -51.92 -0.42 0.49 16 35 H 0.10 0.80 6.71 -51.93 -0.35 0.46 16 36 H 0.12 1.25 8.05 -52.49 -0.42 0.83 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.12 1.20 6.49 -52.49 -0.34 0.86 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 45 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -35.02 394.99 -11.56 -46.58 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.21 Total: 3.53 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -5.06 Total: -10.89 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.30 Total: -52.86 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.02 -11.56 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675360296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.016 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds