Wall clock time and date at job start Tue Mar 31 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46612 * 2 1 4 4 N 1.46494 * 109.47361 * 119.99853 * 2 1 3 5 5 C 1.34783 * 120.00371 * 275.00270 * 4 2 1 6 6 O 1.21280 * 119.99674 * 359.97438 * 5 4 2 7 7 C 1.50693 * 120.00257 * 179.97438 * 5 4 2 8 8 C 1.50700 * 109.47036 * 179.97438 * 7 5 4 9 9 C 1.36127 * 120.17386 * 264.99852 * 8 7 5 10 10 C 1.39334 * 120.98660 * 179.97438 * 9 8 7 11 11 C 1.36121 * 120.99105 * 0.02562 * 10 9 8 12 12 C 1.40505 * 119.65594 * 359.97420 * 11 10 9 13 13 C 1.40547 * 121.29358 * 179.72903 * 12 11 10 14 14 C 1.36091 * 119.65229 * 179.77585 * 13 12 11 15 15 C 1.39378 * 120.99195 * 0.50990 * 14 13 12 16 16 C 1.36088 * 120.99903 * 359.73757 * 15 14 13 17 17 C 1.40499 * 120.17169 * 84.95842 * 8 7 5 18 18 C 1.52995 * 109.47020 * 240.00251 * 2 1 3 19 19 C 1.53948 * 113.74235 * 158.73858 * 18 2 1 20 20 N 1.47809 * 86.03943 * 222.08309 * 19 18 2 21 21 C 1.36931 * 134.45913 * 204.64483 * 20 19 18 22 22 H 1.08000 * 120.00408 * 179.86272 * 21 20 19 23 23 C 1.38816 * 119.99655 * 359.86553 * 21 20 19 24 24 N 1.31613 * 120.00489 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99767 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47398 * 89.99773 * 25 23 21 27 27 H 1.48497 * 109.47112 * 210.00169 * 25 23 21 28 28 H 1.48508 * 109.47063 * 329.99656 * 25 23 21 29 29 C 1.47584 * 91.04951 * 24.54826 * 20 19 18 30 30 H 1.08994 * 109.46999 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.46612 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46997 * 299.99671 * 1 2 3 33 33 H 0.96999 * 120.00276 * 95.00224 * 4 2 1 34 34 H 1.09007 * 109.46683 * 60.00224 * 7 5 4 35 35 H 1.08996 * 109.47347 * 300.00070 * 7 5 4 36 36 H 1.07995 * 119.50629 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.50051 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.17689 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.17054 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.50404 * 180.25240 * 14 13 12 41 41 H 1.08008 * 119.50499 * 179.75791 * 15 14 13 42 42 H 1.07994 * 120.17632 * 180.02562 * 16 15 14 43 43 H 1.09000 * 112.94336 * 290.32949 * 18 2 1 44 44 H 1.09005 * 113.76530 * 336.34986 * 19 18 2 45 45 H 1.08995 * 113.77002 * 107.74016 * 19 18 2 46 46 H 0.97001 * 120.00301 * 180.02562 * 24 23 21 47 47 H 1.09003 * 113.77090 * 221.15161 * 29 20 19 48 48 H 1.09003 * 113.86887 * 89.77019 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1472 -0.0182 2.3572 6 8 1.8591 1.1586 2.4115 7 6 2.6490 -0.7287 3.5877 8 6 2.7004 0.2398 4.7411 9 6 3.8600 0.8873 5.0398 10 6 3.9264 1.7865 6.1020 11 6 2.8339 2.0434 6.8722 12 6 1.6192 1.3942 6.5944 13 6 0.4715 1.6294 7.3708 14 6 -0.6890 0.9856 7.0691 15 6 -0.7556 0.0864 6.0063 16 6 0.3365 -0.1702 5.2359 17 6 1.5514 0.4799 5.5133 18 6 2.0400 -0.7212 -1.2492 19 6 3.4848 -0.3519 -1.6317 20 7 2.9979 -0.3175 -3.0269 21 6 3.5874 -0.4755 -4.2526 22 1 2.9927 -0.4036 -5.1513 23 6 4.9496 -0.7281 -4.3402 24 7 5.6744 -0.8163 -3.2451 25 14 5.7541 -0.9430 -6.0124 26 1 6.2189 0.3762 -6.5113 27 1 6.9138 -1.8623 -5.8893 28 1 4.7690 -1.5138 -6.9659 29 6 1.6214 -0.0471 -2.5684 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2492 -1.6317 1.1526 34 1 3.6482 -1.1212 3.3985 35 1 1.9762 -1.5505 3.8326 36 1 4.7416 0.7011 4.4445 37 1 4.8590 2.2866 6.3179 38 1 2.9003 2.7426 7.6926 39 1 0.5092 2.3204 8.1999 40 1 -1.5706 1.1713 7.6647 41 1 -1.6880 -0.4142 5.7906 42 1 0.2699 -0.8692 4.4154 43 1 1.8529 -1.7947 -1.2263 44 1 3.8047 0.6192 -1.2539 45 1 4.2071 -1.1445 -1.4367 46 1 6.6263 -0.9925 -3.3063 47 1 0.8586 -0.5968 -3.1199 48 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675360296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:01 Heat of formation + Delta-G solvation = 35.313416 kcal Electronic energy + Delta-G solvation = -28339.714975 eV Core-core repulsion = 24552.904419 eV Total energy + Delta-G solvation = -3786.810556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62264 -40.72238 -39.57873 -37.39948 -36.13620 -34.70227 -34.15984 -32.08119 -31.16361 -30.82210 -29.36966 -28.36070 -26.54442 -25.62328 -24.25058 -23.85947 -23.27633 -21.93610 -21.31452 -20.45651 -18.77343 -18.40354 -17.98478 -17.88250 -17.41212 -16.99268 -16.91008 -16.08059 -15.76388 -15.50771 -15.27616 -15.09984 -14.76280 -14.66938 -14.38857 -14.32257 -14.10922 -14.02141 -13.58395 -13.43071 -13.26500 -13.09994 -12.92613 -12.79081 -12.74348 -12.66384 -12.50543 -12.19169 -11.99397 -11.78660 -11.74526 -11.62728 -11.47361 -11.24995 -10.97227 -10.87081 -10.59660 -9.97659 -9.47960 -8.92861 -8.72698 -7.91234 -5.24818 -0.36261 0.14663 1.12949 1.44482 1.46712 1.55249 1.72575 2.07639 2.36267 2.46865 3.22771 3.29588 3.38552 3.55955 3.73203 3.87290 3.92908 3.97169 4.04756 4.11398 4.16774 4.31268 4.33407 4.38470 4.50738 4.51568 4.52469 4.60024 4.65487 4.68353 4.74512 4.83202 4.86849 4.91926 5.01748 5.08199 5.12547 5.25283 5.26085 5.33743 5.35405 5.38747 5.50771 5.55179 5.58727 5.65818 5.68899 5.74504 5.93272 5.96344 6.16306 6.66687 6.91346 7.36285 7.60149 8.56145 9.25643 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.002269 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.411236 B =12338.042041 C =13297.719660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.161 3.839 3 H 0.053 0.947 4 N -0.712 5.712 5 C 0.514 3.486 6 O -0.578 6.578 7 C -0.101 4.101 8 C -0.067 4.067 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.116 4.116 12 C -0.077 4.077 13 C -0.115 4.115 14 C -0.124 4.124 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.057 4.057 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.645 5.645 21 C -0.235 4.235 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.129 3.871 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.000 1.000 45 H 0.044 0.956 46 H 0.248 0.752 47 H 0.065 0.935 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -1.299 23.870 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.072 0.928 4 N -0.364 5.364 5 C 0.301 3.699 6 O -0.458 6.458 7 C -0.140 4.140 8 C -0.067 4.067 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.133 4.133 12 C -0.077 4.077 13 C -0.132 4.132 14 C -0.142 4.142 15 C -0.140 4.140 16 C -0.139 4.139 17 C -0.057 4.057 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.372 5.372 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.263 4.263 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.003 3.997 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.250 0.750 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.125 0.875 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.892 -0.535 23.656 26.483 hybrid contribution 1.183 -0.048 -1.199 1.685 sum -10.709 -0.583 22.457 24.887 Atomic orbital electron populations 1.22027 0.93503 1.03102 1.01971 1.20759 0.94920 0.95612 0.83202 0.92840 1.45988 1.66853 1.14693 1.08823 1.20940 0.76901 0.86965 0.85050 1.90705 1.51515 1.17905 1.85639 1.20755 1.05895 0.98101 0.89225 1.19334 0.93342 0.98414 0.95634 1.21011 0.98146 0.96854 0.98035 1.21100 0.99818 0.98030 0.95229 1.21322 0.91747 0.99699 1.00558 1.18436 0.95609 0.97495 0.96138 1.21329 0.91993 1.00250 0.99676 1.21198 0.98739 0.96507 0.97746 1.21184 0.99013 0.98400 0.95407 1.21211 0.92477 1.00206 0.99994 1.18149 0.94255 0.97515 0.95776 1.23426 0.96089 1.00590 0.92549 1.22168 0.94122 0.96343 0.83056 1.46459 1.05897 1.82808 1.02016 1.19455 0.91980 1.40486 0.84428 0.89804 1.25653 0.96773 1.02979 1.00858 1.70006 1.05832 1.56716 1.27775 0.85071 0.77928 0.77148 0.79148 1.21688 1.21892 1.19016 1.22682 0.87681 0.97404 0.91890 0.91117 0.90480 0.93426 0.74959 0.85695 0.85262 0.85327 0.83954 0.83333 0.83450 0.83460 0.83950 0.85202 0.87471 0.98225 0.93777 0.94304 0.91689 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.31 71.98 0.67 -2.96 16 2 C 0.16 4.80 2.38 44.99 0.11 4.91 16 3 H 0.05 1.99 7.42 -2.39 -0.02 1.97 16 4 N -0.71 -17.84 5.08 -442.54 -2.25 -20.08 16 5 C 0.51 14.08 7.79 87.65 0.68 14.77 16 6 O -0.58 -21.33 15.70 -3.03 -0.05 -21.38 16 7 C -0.10 -2.00 5.23 29.10 0.15 -1.84 16 8 C -0.07 -1.61 4.38 -19.80 -0.09 -1.70 16 9 C -0.12 -2.86 9.57 22.04 0.21 -2.65 16 10 C -0.12 -2.57 9.95 22.04 0.22 -2.35 16 11 C -0.12 -2.32 9.77 22.33 0.22 -2.10 16 12 C -0.08 -1.75 5.74 -21.30 -0.12 -1.87 16 13 C -0.11 -2.06 9.77 22.33 0.22 -1.84 16 14 C -0.12 -2.02 9.95 22.04 0.22 -1.80 16 15 C -0.12 -2.17 9.95 22.04 0.22 -1.95 16 16 C -0.12 -2.58 9.28 22.33 0.21 -2.38 16 17 C -0.06 -1.40 5.74 -21.30 -0.12 -1.52 16 18 C -0.11 -3.67 3.47 -10.13 -0.04 -3.71 16 19 C 0.17 8.03 7.08 86.44 0.61 8.64 16 20 N -0.65 -33.41 3.70 -716.05 -2.65 -36.06 16 21 C -0.24 -13.35 10.70 84.04 0.90 -12.45 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.95 -58.21 11.39 21.65 0.25 -57.97 16 25 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 C 0.13 5.03 7.64 86.49 0.66 5.69 16 30 H 0.07 1.68 7.52 -2.39 -0.02 1.67 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.41 7.97 8.60 -92.71 -0.80 7.17 16 34 H 0.13 1.99 8.04 -2.38 -0.02 1.97 16 35 H 0.13 1.81 6.71 -2.39 -0.02 1.80 16 36 H 0.13 2.69 8.05 -2.91 -0.02 2.67 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.13 2.40 6.49 -2.91 -0.02 2.38 16 43 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.00 0.00 7.99 -2.38 -0.02 -0.02 16 45 H 0.04 2.32 7.16 -2.39 -0.02 2.30 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -78.42 394.99 2.89 -75.53 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.17 Total: 22.51 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.40 Total: -10.68 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.65 Total: -114.11 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.42 2.89 -75.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675360296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.845 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds