Wall clock time and date at job start Tue Mar 31 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46949 * 2 1 4 4 N 1.46501 * 109.47438 * 120.00633 * 2 1 3 5 5 C 1.34769 * 119.99728 * 274.99878 * 4 2 1 6 6 O 1.21278 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99905 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.47415 * 179.97438 * 7 5 4 9 9 C 1.39374 * 119.50598 * 269.97878 * 8 7 5 10 10 C 1.36087 * 120.98902 * 179.97438 * 9 8 7 11 11 C 1.40545 * 119.65544 * 0.03915 * 10 9 8 12 12 C 1.40533 * 121.28541 * 179.97438 * 11 10 9 13 13 C 1.36093 * 119.65526 * 179.97438 * 12 11 10 14 14 C 1.39378 * 120.98927 * 359.94849 * 13 12 11 15 15 C 1.36095 * 120.98758 * 0.06983 * 14 13 12 16 16 C 1.40545 * 119.65358 * 359.95511 * 15 14 13 17 17 C 1.36093 * 119.50416 * 89.99782 * 8 7 5 18 18 C 1.53002 * 109.46894 * 240.00716 * 2 1 3 19 19 C 1.53945 * 113.74507 * 158.74010 * 18 2 1 20 20 N 1.47811 * 86.03821 * 222.08371 * 19 18 2 21 21 C 1.36936 * 134.45710 * 204.63962 * 20 19 18 22 22 H 1.07993 * 119.99908 * 179.86514 * 21 20 19 23 23 C 1.38811 * 119.99854 * 359.87249 * 21 20 19 24 24 N 1.31624 * 120.00135 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47055 * 89.99788 * 25 23 21 27 27 H 1.48495 * 109.46872 * 209.99767 * 25 23 21 28 28 H 1.48496 * 109.46877 * 329.99910 * 25 23 21 29 29 C 1.47584 * 91.05123 * 24.54833 * 20 19 18 30 30 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46550 * 299.99459 * 1 2 3 32 32 H 1.08996 * 109.47229 * 59.98942 * 1 2 3 33 33 H 0.96998 * 120.00091 * 94.99579 * 4 2 1 34 34 H 1.09001 * 109.47128 * 59.99995 * 7 5 4 35 35 H 1.08999 * 109.47204 * 299.99812 * 7 5 4 36 36 H 1.07996 * 119.50518 * 0.02562 * 9 8 7 37 37 H 1.08001 * 120.17917 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.17302 * 359.95478 * 12 11 10 39 39 H 1.08000 * 119.50630 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.50867 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.16921 * 180.22554 * 15 14 13 42 42 H 1.08005 * 120.17341 * 359.96274 * 17 8 7 43 43 H 1.09000 * 112.94274 * 290.33419 * 18 2 1 44 44 H 1.09005 * 113.76755 * 336.35103 * 19 18 2 45 45 H 1.09000 * 113.76933 * 107.74037 * 19 18 2 46 46 H 0.96994 * 119.99937 * 180.02562 * 24 23 21 47 47 H 1.08997 * 113.76726 * 221.15692 * 29 20 19 48 48 H 1.08997 * 113.87278 * 89.76448 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8592 1.1583 2.4116 7 6 2.6502 -0.7288 3.5873 8 6 2.7014 0.2395 4.7408 9 6 3.8640 0.9732 4.9701 10 6 3.9432 1.8562 6.0025 11 6 2.8381 2.0328 6.8528 12 6 2.8825 2.9349 7.9295 13 6 1.7928 3.0800 8.7318 14 6 0.6297 2.3473 8.5018 15 6 0.5504 1.4644 7.4692 16 6 1.6558 1.2871 6.6195 17 6 1.6119 0.3841 5.5434 18 6 2.0400 -0.7211 -1.2494 19 6 3.4847 -0.3519 -1.6319 20 7 2.9977 -0.3174 -3.0270 21 6 3.5873 -0.4752 -4.2528 22 1 2.9925 -0.4032 -5.1514 23 6 4.9494 -0.7280 -4.3405 24 7 5.6743 -0.8154 -3.2454 25 14 5.7535 -0.9440 -6.0127 26 1 6.2183 0.3749 -6.5126 27 1 6.9133 -1.8632 -5.8891 28 1 4.7683 -1.5154 -6.9656 29 6 1.6212 -0.0469 -2.5685 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 2.2491 -1.6319 1.1524 34 1 3.6495 -1.1206 3.3976 35 1 1.9780 -1.5512 3.8323 36 1 4.7145 0.8396 4.3180 37 1 4.8507 2.4177 6.1684 38 1 3.7768 3.5097 8.1195 39 1 1.8297 3.7737 9.5587 40 1 -0.2211 2.4816 9.1532 41 1 -0.3587 0.9061 7.3009 42 1 0.7176 -0.1910 5.3536 43 1 1.8527 -1.7947 -1.2265 44 1 3.8048 0.6192 -1.2540 45 1 4.2070 -1.1446 -1.4369 46 1 6.6262 -0.9916 -3.3067 47 1 0.8585 -0.5966 -3.1200 48 1 1.3908 1.0135 -2.4660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675363836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:53 Heat of formation + Delta-G solvation = 52.754500 kcal Electronic energy + Delta-G solvation = -27791.120622 eV Core-core repulsion = 24005.066369 eV Total energy + Delta-G solvation = -3786.054254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64230 -39.65843 -38.12120 -36.76948 -34.71792 -33.14226 -32.29814 -31.87198 -30.39038 -29.60552 -27.53825 -27.41292 -24.82884 -23.98980 -23.48725 -22.60925 -22.08618 -21.20211 -20.24152 -19.02275 -17.51486 -17.13974 -16.89466 -16.66688 -16.37258 -15.82494 -15.06357 -14.87923 -14.79598 -14.43052 -14.08166 -13.86219 -13.62894 -13.61815 -13.48511 -13.32501 -13.06338 -12.81306 -12.46033 -12.29758 -11.98327 -11.81883 -11.63652 -11.36493 -11.30492 -11.28499 -11.13223 -10.96873 -10.91196 -10.70772 -10.35615 -10.11381 -9.96489 -9.74400 -9.63972 -9.39494 -8.79556 -8.76195 -8.64573 -8.01206 -6.87010 -5.76513 -3.08543 0.40044 0.86303 1.92707 2.78365 2.81110 3.38817 3.42761 3.44317 3.45590 4.00789 4.38381 4.45317 4.51494 4.67201 4.74493 4.86720 4.93645 5.02633 5.05755 5.15739 5.20934 5.27347 5.29264 5.31029 5.38358 5.40761 5.54273 5.61487 5.67275 5.80797 5.82408 5.90889 5.95677 6.04713 6.07966 6.09683 6.26576 6.28047 6.37277 6.41958 6.43474 6.47703 6.60378 6.68291 6.68838 6.83389 6.86943 7.23668 7.37127 7.56083 7.71890 7.98523 8.42410 9.05112 9.71276 10.60813 11.40633 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.001996 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.382027 B =14024.425896 C =14802.788170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.719 5.719 5 C 0.513 3.487 6 O -0.536 6.536 7 C -0.108 4.108 8 C -0.054 4.054 9 C -0.096 4.096 10 C -0.108 4.108 11 C -0.052 4.052 12 C -0.105 4.105 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.104 4.104 16 C -0.049 4.049 17 C -0.095 4.095 18 C -0.146 4.146 19 C 0.171 3.829 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.253 0.747 47 H 0.044 0.956 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 0.760 24.270 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.104 0.896 4 N -0.370 5.370 5 C 0.299 3.701 6 O -0.412 6.412 7 C -0.148 4.148 8 C -0.054 4.054 9 C -0.114 4.114 10 C -0.126 4.126 11 C -0.052 4.052 12 C -0.123 4.123 13 C -0.140 4.140 14 C -0.140 4.140 15 C -0.122 4.122 16 C -0.049 4.049 17 C -0.113 4.113 18 C -0.166 4.166 19 C 0.046 3.954 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.003 3.997 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.851 1.549 24.053 25.677 hybrid contribution 0.661 -0.398 -1.021 1.280 sum -8.190 1.150 23.032 24.472 Atomic orbital electron populations 1.22125 0.95823 1.01634 1.02020 1.21068 0.93358 0.97555 0.83412 0.89598 1.46101 1.67133 1.14082 1.09656 1.20410 0.77925 0.87453 0.84328 1.90722 1.49717 1.15827 1.84956 1.20767 1.04355 0.97991 0.91663 1.19014 0.94127 0.97207 0.95096 1.20756 0.97671 0.95758 0.97214 1.20970 0.97743 0.98674 0.95230 1.18104 0.93892 0.97029 0.96192 1.21030 0.98873 0.97843 0.94596 1.20820 0.93476 0.99885 0.99807 1.20817 0.98066 0.96927 0.98168 1.21028 0.97576 0.98725 0.94910 1.18036 0.93808 0.96990 0.96031 1.20809 0.97841 0.98182 0.94461 1.23810 1.00882 0.99608 0.92312 1.22287 0.91385 0.98454 0.83280 1.46011 1.03311 1.82573 1.02021 1.19032 0.91454 1.41469 0.82998 0.90287 1.24786 0.96055 1.02455 0.97281 1.69817 1.06042 1.55310 1.25751 0.86123 0.78999 0.77543 0.83130 1.21642 1.21647 1.20624 1.22491 0.89638 0.96615 0.90956 0.92795 0.92857 0.91524 0.76676 0.87643 0.88000 0.85792 0.85523 0.85709 0.86192 0.86176 0.85716 0.85775 0.89437 0.95689 0.91061 0.93696 0.93795 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.31 37.16 0.35 -1.75 16 2 C 0.15 2.30 2.38 -67.93 -0.16 2.14 16 3 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 4 N -0.72 -9.30 5.08 -53.80 -0.27 -9.57 16 5 C 0.51 7.01 7.79 -10.99 -0.09 6.92 16 6 O -0.54 -9.58 15.70 5.56 0.09 -9.49 16 7 C -0.11 -1.06 5.80 -29.03 -0.17 -1.23 16 8 C -0.05 -0.62 4.34 -104.97 -0.46 -1.08 16 9 C -0.10 -1.10 9.58 -39.93 -0.38 -1.49 16 10 C -0.11 -1.18 9.77 -39.49 -0.39 -1.57 16 11 C -0.05 -0.59 5.74 -106.83 -0.61 -1.21 16 12 C -0.11 -1.00 9.77 -39.49 -0.39 -1.39 16 13 C -0.12 -1.04 9.95 -39.93 -0.40 -1.43 16 14 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 15 C -0.10 -1.01 9.77 -39.48 -0.39 -1.39 16 16 C -0.05 -0.56 5.74 -106.83 -0.61 -1.17 16 17 C -0.09 -1.07 9.37 -39.49 -0.37 -1.44 16 18 C -0.15 -2.58 3.47 -89.69 -0.31 -2.89 16 19 C 0.17 3.97 7.08 -2.84 -0.02 3.95 16 20 N -0.61 -15.75 3.70 -177.69 -0.66 -16.41 16 21 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.92 -27.39 11.39 55.49 0.63 -26.75 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.13 2.60 7.64 -2.96 -0.02 2.58 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 33 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 34 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.03 0.62 7.99 -51.93 -0.41 0.20 16 45 H 0.07 1.81 7.17 -51.93 -0.37 1.44 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -34.94 398.43 -11.67 -46.61 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.37 Total: 3.08 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -5.07 Total: -10.68 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.30 Total: -52.74 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.94 -11.67 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675363836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.364 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds