Wall clock time and date at job start Tue Mar 31 2020 22:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46949 * 2 1 4 4 N 1.46501 * 109.47438 * 120.00633 * 2 1 3 5 5 C 1.34769 * 119.99728 * 274.99878 * 4 2 1 6 6 O 1.21278 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99905 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.47415 * 179.97438 * 7 5 4 9 9 C 1.39374 * 119.50598 * 269.97878 * 8 7 5 10 10 C 1.36087 * 120.98902 * 179.97438 * 9 8 7 11 11 C 1.40545 * 119.65544 * 0.03915 * 10 9 8 12 12 C 1.40533 * 121.28541 * 179.97438 * 11 10 9 13 13 C 1.36093 * 119.65526 * 179.97438 * 12 11 10 14 14 C 1.39378 * 120.98927 * 359.94849 * 13 12 11 15 15 C 1.36095 * 120.98758 * 0.06983 * 14 13 12 16 16 C 1.40545 * 119.65358 * 359.95511 * 15 14 13 17 17 C 1.36093 * 119.50416 * 89.99782 * 8 7 5 18 18 C 1.53002 * 109.46894 * 240.00716 * 2 1 3 19 19 C 1.53945 * 113.74507 * 158.74010 * 18 2 1 20 20 N 1.47811 * 86.03821 * 222.08371 * 19 18 2 21 21 C 1.36936 * 134.45710 * 204.63962 * 20 19 18 22 22 H 1.07993 * 119.99908 * 179.86514 * 21 20 19 23 23 C 1.38811 * 119.99854 * 359.87249 * 21 20 19 24 24 N 1.31624 * 120.00135 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47055 * 89.99788 * 25 23 21 27 27 H 1.48495 * 109.46872 * 209.99767 * 25 23 21 28 28 H 1.48496 * 109.46877 * 329.99910 * 25 23 21 29 29 C 1.47584 * 91.05123 * 24.54833 * 20 19 18 30 30 H 1.08999 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46550 * 299.99459 * 1 2 3 32 32 H 1.08996 * 109.47229 * 59.98942 * 1 2 3 33 33 H 0.96998 * 120.00091 * 94.99579 * 4 2 1 34 34 H 1.09001 * 109.47128 * 59.99995 * 7 5 4 35 35 H 1.08999 * 109.47204 * 299.99812 * 7 5 4 36 36 H 1.07996 * 119.50518 * 0.02562 * 9 8 7 37 37 H 1.08001 * 120.17917 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.17302 * 359.95478 * 12 11 10 39 39 H 1.08000 * 119.50630 * 179.97438 * 13 12 11 40 40 H 1.07996 * 119.50867 * 180.02562 * 14 13 12 41 41 H 1.07998 * 120.16921 * 180.22554 * 15 14 13 42 42 H 1.08005 * 120.17341 * 359.96274 * 17 8 7 43 43 H 1.09000 * 112.94274 * 290.33419 * 18 2 1 44 44 H 1.09005 * 113.76755 * 336.35103 * 19 18 2 45 45 H 1.09000 * 113.76933 * 107.74037 * 19 18 2 46 46 H 0.96994 * 119.99937 * 180.02562 * 24 23 21 47 47 H 1.08997 * 113.76726 * 221.15692 * 29 20 19 48 48 H 1.08997 * 113.87278 * 89.76448 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8592 1.1583 2.4116 7 6 2.6502 -0.7288 3.5873 8 6 2.7014 0.2395 4.7408 9 6 3.8640 0.9732 4.9701 10 6 3.9432 1.8562 6.0025 11 6 2.8381 2.0328 6.8528 12 6 2.8825 2.9349 7.9295 13 6 1.7928 3.0800 8.7318 14 6 0.6297 2.3473 8.5018 15 6 0.5504 1.4644 7.4692 16 6 1.6558 1.2871 6.6195 17 6 1.6119 0.3841 5.5434 18 6 2.0400 -0.7211 -1.2494 19 6 3.4847 -0.3519 -1.6319 20 7 2.9977 -0.3174 -3.0270 21 6 3.5873 -0.4752 -4.2528 22 1 2.9925 -0.4032 -5.1514 23 6 4.9494 -0.7280 -4.3405 24 7 5.6743 -0.8154 -3.2454 25 14 5.7535 -0.9440 -6.0127 26 1 6.2183 0.3749 -6.5126 27 1 6.9133 -1.8632 -5.8891 28 1 4.7683 -1.5154 -6.9656 29 6 1.6212 -0.0469 -2.5685 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 2.2491 -1.6319 1.1524 34 1 3.6495 -1.1206 3.3976 35 1 1.9780 -1.5512 3.8323 36 1 4.7145 0.8396 4.3180 37 1 4.8507 2.4177 6.1684 38 1 3.7768 3.5097 8.1195 39 1 1.8297 3.7737 9.5587 40 1 -0.2211 2.4816 9.1532 41 1 -0.3587 0.9061 7.3009 42 1 0.7176 -0.1910 5.3536 43 1 1.8527 -1.7947 -1.2265 44 1 3.8048 0.6192 -1.2540 45 1 4.2070 -1.1446 -1.4369 46 1 6.6262 -0.9916 -3.3067 47 1 0.8585 -0.5966 -3.1200 48 1 1.3908 1.0135 -2.4660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675363836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:52 Heat of formation + Delta-G solvation = 32.814510 kcal Electronic energy + Delta-G solvation = -27791.985285 eV Core-core repulsion = 24005.066369 eV Total energy + Delta-G solvation = -3786.918917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46705 -40.79280 -39.64283 -37.57958 -36.08261 -34.18845 -33.89414 -32.83268 -31.58398 -30.36599 -29.36637 -28.25963 -26.54323 -25.62469 -24.27247 -23.65879 -22.82949 -22.53214 -21.40137 -20.54913 -18.77496 -18.25249 -17.96822 -17.81738 -17.38872 -16.90845 -16.82741 -16.00294 -15.74687 -15.56053 -15.43655 -15.10589 -14.76883 -14.65284 -14.36314 -14.34328 -14.15787 -14.06003 -13.50421 -13.47306 -13.27006 -13.10129 -12.94210 -12.84635 -12.70855 -12.56836 -12.46599 -12.12206 -11.98804 -11.85758 -11.73858 -11.67998 -11.46967 -11.24423 -10.92866 -10.87284 -10.71893 -9.96495 -9.42422 -8.92499 -8.75810 -7.91139 -5.24661 -0.34163 0.09270 1.16366 1.44502 1.46708 1.55291 1.74818 1.99259 2.42465 2.47202 3.22256 3.29652 3.38838 3.63551 3.73089 3.75842 3.96161 3.99491 4.08370 4.12656 4.17520 4.31502 4.33515 4.40797 4.49079 4.52286 4.54729 4.60610 4.67640 4.70996 4.74953 4.83812 4.87786 4.92178 5.02194 5.07029 5.12782 5.19826 5.25833 5.34263 5.34916 5.38040 5.51310 5.57893 5.59463 5.67170 5.69543 5.70030 5.93553 5.96463 6.14453 6.68714 6.91562 7.38164 7.60282 8.56329 9.25723 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.001996 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.382027 B =14024.425896 C =14802.788170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.053 0.947 4 N -0.712 5.712 5 C 0.512 3.488 6 O -0.582 6.582 7 C -0.098 4.098 8 C -0.071 4.071 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.075 4.075 12 C -0.119 4.119 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.072 4.072 17 C -0.104 4.104 18 C -0.107 4.107 19 C 0.168 3.832 20 N -0.645 5.645 21 C -0.235 4.235 22 H 0.084 0.916 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.128 3.872 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.107 0.893 44 H 0.000 1.000 45 H 0.044 0.956 46 H 0.248 0.752 47 H 0.065 0.935 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 -0.091 25.156 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.054 3.946 3 H 0.072 0.928 4 N -0.364 5.364 5 C 0.300 3.700 6 O -0.462 6.462 7 C -0.137 4.137 8 C -0.072 4.072 9 C -0.135 4.135 10 C -0.136 4.136 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.136 4.136 16 C -0.072 4.072 17 C -0.122 4.122 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.372 5.372 21 C -0.363 4.363 22 H 0.102 0.898 23 C -0.263 4.263 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.190 1.190 29 C 0.003 3.997 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.125 0.875 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.643 0.671 24.942 27.126 hybrid contribution 1.162 -0.042 -1.220 1.685 sum -9.480 0.628 23.722 25.554 Atomic orbital electron populations 1.22031 0.93522 1.03094 1.01987 1.20759 0.94914 0.95617 0.83262 0.92845 1.45994 1.66797 1.14724 1.08845 1.21051 0.76821 0.86945 0.85184 1.90704 1.51781 1.18001 1.85714 1.20787 1.05896 0.98005 0.89052 1.19223 0.94271 0.97874 0.95788 1.20965 0.98218 0.96542 0.97810 1.21235 0.98467 0.98703 0.95146 1.18423 0.94150 0.97879 0.97089 1.21309 1.00156 0.97859 0.94365 1.21212 0.93000 0.99816 1.00045 1.21212 0.98932 0.95979 0.97921 1.21306 0.97760 0.99471 0.95071 1.18374 0.94632 0.97444 0.96749 1.21068 0.98293 0.98355 0.94447 1.23429 0.96085 1.00595 0.92568 1.22172 0.94125 0.96355 0.83051 1.46458 1.05889 1.82800 1.02005 1.19457 0.91982 1.40461 0.84444 0.89806 1.25655 0.96777 1.02999 1.00861 1.70009 1.05821 1.56733 1.27760 0.85067 0.77921 0.77134 0.79151 1.21710 1.21909 1.19011 1.22685 0.87686 0.97410 0.91915 0.90509 0.93355 0.91155 0.74912 0.85922 0.84706 0.85526 0.84033 0.84029 0.83553 0.83528 0.84017 0.84272 0.87473 0.98210 0.93764 0.94311 0.91700 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.31 71.98 0.67 -2.95 16 2 C 0.16 4.75 2.38 44.99 0.11 4.86 16 3 H 0.05 1.97 7.42 -2.39 -0.02 1.96 16 4 N -0.71 -17.56 5.08 -442.54 -2.25 -19.81 16 5 C 0.51 13.69 7.79 87.66 0.68 14.38 16 6 O -0.58 -21.17 15.70 -3.02 -0.05 -21.21 16 7 C -0.10 -1.80 5.80 29.10 0.17 -1.63 16 8 C -0.07 -1.62 4.34 -20.09 -0.09 -1.71 16 9 C -0.12 -2.78 9.58 22.04 0.21 -2.57 16 10 C -0.12 -2.65 9.77 22.33 0.22 -2.43 16 11 C -0.08 -1.73 5.74 -21.30 -0.12 -1.85 16 12 C -0.12 -2.16 9.77 22.33 0.22 -1.95 16 13 C -0.12 -1.87 9.95 22.05 0.22 -1.65 16 14 C -0.12 -1.86 9.95 22.05 0.22 -1.64 16 15 C -0.12 -2.15 9.77 22.33 0.22 -1.93 16 16 C -0.07 -1.64 5.74 -21.30 -0.12 -1.77 16 17 C -0.10 -2.30 9.37 22.33 0.21 -2.09 16 18 C -0.11 -3.67 3.47 -10.13 -0.04 -3.71 16 19 C 0.17 8.00 7.08 86.44 0.61 8.61 16 20 N -0.65 -33.34 3.70 -716.09 -2.65 -35.99 16 21 C -0.24 -13.34 10.70 84.03 0.90 -12.44 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.95 -58.17 11.39 21.65 0.25 -57.92 16 25 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 C 0.13 5.01 7.64 86.49 0.66 5.67 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.67 7.52 -2.39 -0.02 1.65 16 33 H 0.41 7.79 8.60 -92.71 -0.80 6.99 16 34 H 0.12 1.83 8.08 -2.39 -0.02 1.81 16 35 H 0.14 1.56 8.07 -2.39 -0.02 1.54 16 36 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.00 0.00 7.99 -2.38 -0.02 -0.01 16 45 H 0.04 2.32 7.17 -2.39 -0.02 2.30 16 46 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -78.37 398.43 2.90 -75.47 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.16 Total: 21.70 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 5.41 Total: -10.37 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -4.65 Total: -113.72 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.37 2.90 -75.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675363836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.284 kcal (2) G-P(sol) polarization free energy of solvation -78.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds