Wall clock time and date at job start Tue Mar 31 2020 22:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35959 * 117.00101 * 2 1 4 4 C 1.38663 * 120.05977 * 0.02841 * 3 2 1 5 5 C 1.38186 * 119.96457 * 179.70190 * 4 3 2 6 6 C 1.38264 * 120.09521 * 0.54522 * 5 4 3 7 7 C 1.50705 * 119.93530 * 179.72633 * 6 5 4 8 8 C 1.50699 * 109.46741 * 269.72698 * 7 6 5 9 9 O 1.21277 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99755 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00059 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46984 * 34.99747 * 11 10 8 13 13 C 1.53002 * 109.46680 * 274.99983 * 11 10 8 14 14 C 1.52996 * 109.47041 * 154.99948 * 11 10 8 15 15 C 1.52997 * 109.47131 * 294.99476 * 14 11 10 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 11 17 17 N 1.46496 * 109.46995 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99946 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00046 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00249 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00063 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99753 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47492 * 90.00038 * 22 20 18 24 24 H 1.48500 * 109.46982 * 209.99770 * 22 20 18 25 25 H 1.48507 * 109.47317 * 329.99642 * 22 20 18 26 26 C 1.38253 * 120.12610 * 359.45331 * 6 5 4 27 27 C 1.38335 * 120.02918 * 0.27332 * 26 6 5 28 28 F 1.35103 * 120.04602 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.47492 * 59.99310 * 1 2 3 30 30 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47002 * 299.99336 * 1 2 3 32 32 H 1.07994 * 120.01957 * 359.97315 * 4 3 2 33 33 H 1.08003 * 119.94878 * 180.29679 * 5 4 3 34 34 H 1.08993 * 109.46784 * 149.72619 * 7 6 5 35 35 H 1.09000 * 109.46667 * 29.72592 * 7 6 5 36 36 H 0.96999 * 120.00010 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47095 * 180.02562 * 13 11 10 38 38 H 1.09010 * 109.47120 * 299.99962 * 13 11 10 39 39 H 1.08992 * 109.47133 * 59.99601 * 13 11 10 40 40 H 1.09001 * 109.46993 * 174.99345 * 14 11 10 41 41 H 1.09004 * 109.47298 * 54.99759 * 14 11 10 42 42 H 1.09001 * 109.46832 * 60.00325 * 15 14 11 43 43 H 1.08993 * 109.47194 * 299.99846 * 15 14 11 44 44 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 45 45 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 46 46 H 0.96998 * 120.00192 * 359.97438 * 17 16 15 47 47 H 0.96993 * 119.99944 * 180.02562 * 21 20 18 48 48 H 1.07998 * 119.98416 * 180.25031 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0006 5 6 1.9216 3.6053 0.0068 6 6 3.3024 3.6777 0.0011 7 6 3.9850 5.0212 0.0017 8 6 4.2124 5.4697 -1.4190 9 8 3.8550 4.7677 -2.3411 10 7 4.8131 6.6509 -1.6648 11 6 5.0337 7.0871 -3.0458 12 1 4.2031 6.7554 -3.6687 13 6 6.3376 6.4818 -3.5697 14 6 5.1263 8.6137 -3.0898 15 6 3.7805 9.2181 -2.6846 16 6 3.8728 10.7447 -2.7293 17 7 2.5843 11.3234 -2.3407 18 6 2.4267 12.6833 -2.3075 19 1 3.2521 13.3292 -2.5682 20 6 1.2056 13.2317 -1.9398 21 7 1.0543 14.5387 -1.9074 22 14 -0.2222 12.1147 -1.4897 23 1 -0.1907 11.8340 -0.0318 24 1 -1.5021 12.7827 -1.8376 25 1 -0.1092 10.8392 -2.2420 26 6 4.0579 2.5199 0.0005 27 6 3.4333 1.2856 0.0000 28 9 4.1713 0.1539 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2137 2.3201 0.0006 33 1 1.3341 4.5115 0.0121 34 1 4.9430 4.9417 0.5154 35 1 3.3561 5.7480 0.5159 36 1 5.0987 7.2125 -0.9273 37 1 6.5021 6.8066 -4.5970 38 1 7.1683 6.8135 -2.9467 39 1 6.2717 5.3943 -3.5382 40 1 5.3786 8.9334 -4.1009 41 1 5.8989 8.9509 -2.3988 42 1 3.5283 8.8984 -1.6735 43 1 3.0080 8.8809 -3.3757 44 1 4.6455 11.0822 -2.0385 45 1 4.1249 11.0640 -3.7405 46 1 1.8426 10.7434 -2.1077 47 1 0.2012 14.9219 -1.6502 48 1 5.1363 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675930947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:07 Heat of formation + Delta-G solvation = -95.677420 kcal Electronic energy + Delta-G solvation = -28343.299413 eV Core-core repulsion = 24120.039443 eV Total energy + Delta-G solvation = -4223.259969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.02757 -40.60730 -39.88475 -38.02926 -36.78524 -35.03019 -32.94802 -32.36159 -31.20444 -31.06853 -29.82476 -28.49956 -26.85362 -25.90553 -23.14953 -23.00861 -22.25536 -21.04898 -20.92985 -20.55018 -18.68317 -17.53394 -17.33420 -17.32014 -17.18160 -16.47058 -16.29254 -15.36880 -15.35049 -15.18985 -14.83550 -14.63457 -14.60585 -14.26867 -14.12320 -13.86262 -13.77787 -13.35087 -13.02304 -12.71365 -12.66658 -12.58213 -12.30629 -12.23967 -12.11926 -11.91901 -11.72732 -11.50394 -11.44873 -11.29903 -11.00760 -10.93067 -10.56095 -10.42634 -10.13740 -9.99364 -9.61038 -9.26456 -9.19517 -8.91043 -8.46287 -7.24658 -5.78576 -3.13969 0.80700 0.84985 2.49152 2.74124 2.92096 3.33765 3.35099 3.37917 3.43120 3.87525 4.21514 4.31348 4.52251 4.56079 4.57355 4.72396 4.74407 4.78973 4.84080 4.94891 4.97827 5.05447 5.05702 5.08639 5.22288 5.32765 5.40687 5.51069 5.51805 5.53744 5.66886 5.69973 5.77664 5.83366 5.90555 5.98876 6.06590 6.09874 6.11045 6.25746 6.26546 6.40178 6.72515 6.76098 6.88459 7.35359 7.98013 8.08677 8.40723 9.19972 9.92483 10.12475 11.39934 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002206 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.529861 B =12688.657920 C =14558.228070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.179 4.179 5 C -0.072 4.072 6 C -0.072 4.072 7 C -0.102 4.102 8 C 0.514 3.486 9 O -0.533 6.533 10 N -0.723 5.723 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.162 4.162 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.101 4.101 27 C 0.069 3.931 28 F -0.134 7.134 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 -28.481 5.636 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.048 3.952 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.073 4.073 7 C -0.142 4.142 8 C 0.300 3.700 9 O -0.409 6.409 10 N -0.375 5.375 11 C 0.037 3.963 12 H 0.106 0.894 13 C -0.220 4.220 14 C -0.161 4.161 15 C -0.167 4.167 16 C 0.029 3.971 17 N -0.403 5.403 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.120 4.120 27 C 0.049 3.951 28 F -0.113 7.113 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.023 -28.976 4.927 30.003 hybrid contribution -1.120 -0.371 0.649 1.346 sum 4.904 -29.347 5.577 30.272 Atomic orbital electron populations 1.23130 0.77827 1.04300 1.01650 1.86126 1.21810 1.25840 1.88731 1.19002 0.90820 0.85647 0.99764 1.21102 1.00348 0.91341 1.06967 1.20895 0.93780 0.97521 0.96861 1.18987 0.93238 0.93321 1.01729 1.20657 1.03062 0.95163 0.95280 1.20477 0.77282 0.81204 0.91081 1.90733 1.50191 1.53848 1.46149 1.46128 1.61365 1.20858 1.09157 1.21037 0.98360 0.94302 0.82628 0.89429 1.22166 0.97126 1.01397 1.01346 1.21841 0.98550 0.92609 1.03126 1.21778 0.96512 0.96896 1.01498 1.20634 0.88910 0.89893 0.97641 1.42729 1.09525 1.04482 1.83586 1.19078 0.98281 0.81356 1.38713 0.89255 1.24692 0.97473 0.95464 1.01714 1.69700 1.24856 1.09048 1.54660 0.86522 0.83183 0.80309 0.78365 1.21099 1.21710 1.20368 1.20799 1.00797 0.89747 1.00650 1.16857 0.85915 0.82891 1.09404 1.91496 1.76401 1.49005 1.94350 0.92299 0.87931 0.92360 0.84368 0.84910 0.87634 0.87319 0.76424 0.91553 0.92485 0.92345 0.90133 0.91202 0.92112 0.92054 0.95664 0.95679 0.80748 0.93061 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.19 10.36 -19.61 -0.20 -3.40 16 3 C 0.09 1.00 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.60 9.04 -39.44 -0.36 -1.96 16 5 C -0.07 -0.66 9.69 -39.59 -0.38 -1.04 16 6 C -0.07 -0.66 4.37 -104.60 -0.46 -1.12 16 7 C -0.10 -0.73 5.83 -29.03 -0.17 -0.90 16 8 C 0.51 5.34 7.79 -10.98 -0.09 5.26 16 9 O -0.53 -7.78 15.70 5.56 0.09 -7.69 16 10 N -0.72 -6.48 4.53 -53.81 -0.24 -6.73 16 11 C 0.14 1.43 2.57 -67.93 -0.17 1.25 16 12 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 13 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 14 C -0.12 -1.28 4.75 -26.73 -0.13 -1.40 16 15 C -0.13 -1.79 5.22 -26.73 -0.14 -1.93 16 16 C 0.16 2.90 6.26 -4.04 -0.03 2.87 16 17 N -0.76 -17.96 5.41 -59.91 -0.32 -18.28 16 18 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 21 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 22 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 26 C -0.10 -0.99 9.67 -39.54 -0.38 -1.37 16 27 C 0.07 0.78 7.31 -39.30 -0.29 0.50 16 28 F -0.13 -1.66 17.11 2.25 0.04 -1.62 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.26 7.66 -51.92 -0.40 -0.14 16 32 H 0.14 0.90 6.30 -52.49 -0.33 0.57 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.11 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.11 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.40 2.70 8.60 -40.82 -0.35 2.35 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.32 5.53 -40.82 -0.23 8.10 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -36.30 403.03 -7.85 -44.15 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.58 Total: 5.01 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.76 Total: -6.23 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.21 Total: -53.62 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.12 Total: -11.09 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.30 -7.85 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675930947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.529 kcal (2) G-P(sol) polarization free energy of solvation -36.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds