Wall clock time and date at job start Tue Mar 31 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35959 * 117.00101 * 2 1 4 4 C 1.38663 * 120.05977 * 0.02841 * 3 2 1 5 5 C 1.38186 * 119.96457 * 179.70190 * 4 3 2 6 6 C 1.38264 * 120.09521 * 0.54522 * 5 4 3 7 7 C 1.50705 * 119.93530 * 179.72633 * 6 5 4 8 8 C 1.50699 * 109.46741 * 269.72698 * 7 6 5 9 9 O 1.21277 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99755 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00059 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46984 * 34.99747 * 11 10 8 13 13 C 1.53002 * 109.46680 * 274.99983 * 11 10 8 14 14 C 1.52996 * 109.47041 * 154.99948 * 11 10 8 15 15 C 1.52997 * 109.47131 * 294.99476 * 14 11 10 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 11 17 17 N 1.46496 * 109.46995 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99946 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00046 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00249 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00063 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99753 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47492 * 90.00038 * 22 20 18 24 24 H 1.48500 * 109.46982 * 209.99770 * 22 20 18 25 25 H 1.48507 * 109.47317 * 329.99642 * 22 20 18 26 26 C 1.38253 * 120.12610 * 359.45331 * 6 5 4 27 27 C 1.38335 * 120.02918 * 0.27332 * 26 6 5 28 28 F 1.35103 * 120.04602 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.47492 * 59.99310 * 1 2 3 30 30 H 1.09001 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47002 * 299.99336 * 1 2 3 32 32 H 1.07994 * 120.01957 * 359.97315 * 4 3 2 33 33 H 1.08003 * 119.94878 * 180.29679 * 5 4 3 34 34 H 1.08993 * 109.46784 * 149.72619 * 7 6 5 35 35 H 1.09000 * 109.46667 * 29.72592 * 7 6 5 36 36 H 0.96999 * 120.00010 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47095 * 180.02562 * 13 11 10 38 38 H 1.09010 * 109.47120 * 299.99962 * 13 11 10 39 39 H 1.08992 * 109.47133 * 59.99601 * 13 11 10 40 40 H 1.09001 * 109.46993 * 174.99345 * 14 11 10 41 41 H 1.09004 * 109.47298 * 54.99759 * 14 11 10 42 42 H 1.09001 * 109.46832 * 60.00325 * 15 14 11 43 43 H 1.08993 * 109.47194 * 299.99846 * 15 14 11 44 44 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 45 45 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 46 46 H 0.96998 * 120.00192 * 359.97438 * 17 16 15 47 47 H 0.96993 * 119.99944 * 180.02562 * 21 20 18 48 48 H 1.07998 * 119.98416 * 180.25031 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0006 5 6 1.9216 3.6053 0.0068 6 6 3.3024 3.6777 0.0011 7 6 3.9850 5.0212 0.0017 8 6 4.2124 5.4697 -1.4190 9 8 3.8550 4.7677 -2.3411 10 7 4.8131 6.6509 -1.6648 11 6 5.0337 7.0871 -3.0458 12 1 4.2031 6.7554 -3.6687 13 6 6.3376 6.4818 -3.5697 14 6 5.1263 8.6137 -3.0898 15 6 3.7805 9.2181 -2.6846 16 6 3.8728 10.7447 -2.7293 17 7 2.5843 11.3234 -2.3407 18 6 2.4267 12.6833 -2.3075 19 1 3.2521 13.3292 -2.5682 20 6 1.2056 13.2317 -1.9398 21 7 1.0543 14.5387 -1.9074 22 14 -0.2222 12.1147 -1.4897 23 1 -0.1907 11.8340 -0.0318 24 1 -1.5021 12.7827 -1.8376 25 1 -0.1092 10.8392 -2.2420 26 6 4.0579 2.5199 0.0005 27 6 3.4333 1.2856 0.0000 28 9 4.1713 0.1539 -0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2137 2.3201 0.0006 33 1 1.3341 4.5115 0.0121 34 1 4.9430 4.9417 0.5154 35 1 3.3561 5.7480 0.5159 36 1 5.0987 7.2125 -0.9273 37 1 6.5021 6.8066 -4.5970 38 1 7.1683 6.8135 -2.9467 39 1 6.2717 5.3943 -3.5382 40 1 5.3786 8.9334 -4.1009 41 1 5.8989 8.9509 -2.3988 42 1 3.5283 8.8984 -1.6735 43 1 3.0080 8.8809 -3.3757 44 1 4.6455 11.0822 -2.0385 45 1 4.1249 11.0640 -3.7405 46 1 1.8426 10.7434 -2.1077 47 1 0.2012 14.9219 -1.6502 48 1 5.1363 2.5791 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675930947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:06 Heat of formation + Delta-G solvation = -120.071593 kcal Electronic energy + Delta-G solvation = -28344.357223 eV Core-core repulsion = 24120.039443 eV Total energy + Delta-G solvation = -4224.317780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.87512 -41.31113 -40.63395 -38.72974 -37.85150 -36.55650 -34.21428 -33.46908 -32.51326 -31.76163 -31.05683 -29.05324 -27.49400 -27.27902 -24.48556 -23.83660 -23.23153 -22.47869 -21.76577 -21.32205 -19.60980 -19.35481 -18.08885 -18.01747 -17.93233 -17.19130 -17.10963 -16.57516 -16.13904 -16.08620 -15.93035 -15.83126 -15.71530 -15.22446 -15.06613 -14.95052 -14.74299 -14.56928 -14.14227 -13.84819 -13.56158 -13.48459 -13.27557 -13.15318 -13.05020 -12.81870 -12.70943 -12.56475 -12.44709 -12.11314 -12.08815 -12.04662 -12.00395 -11.85983 -11.70181 -11.51253 -10.95807 -10.82908 -10.00089 -9.95891 -9.28774 -9.17260 -8.02726 -5.36283 0.09741 0.15353 1.37990 1.42075 1.49672 1.74189 2.15236 2.22535 2.48868 2.64865 3.17049 3.28558 3.52503 3.57714 3.70808 3.88734 3.96087 4.10164 4.14348 4.19529 4.21335 4.33145 4.33960 4.43083 4.46542 4.47926 4.59076 4.65984 4.68703 4.71048 4.83572 4.87376 4.89300 4.94873 5.01246 5.04885 5.11464 5.16467 5.33134 5.39697 5.43661 5.45505 5.61903 5.66252 5.76090 6.21775 6.24242 6.67202 7.08565 7.37440 7.85743 8.04147 9.18838 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.002206 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.529861 B =12688.657920 C =14558.228070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.081 3.919 4 C -0.180 4.180 5 C -0.078 4.078 6 C -0.079 4.079 7 C -0.095 4.095 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.063 0.937 13 C -0.156 4.156 14 C -0.111 4.111 15 C -0.116 4.116 16 C 0.151 3.849 17 N -0.762 5.762 18 C -0.237 4.237 19 H 0.055 0.945 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.960 3.040 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.254 1.254 26 C -0.105 4.105 27 C 0.037 3.963 28 F -0.148 7.148 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.019 0.981 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -29.577 6.689 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.034 3.966 4 C -0.199 4.199 5 C -0.096 4.096 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.299 3.701 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.041 3.959 12 H 0.081 0.919 13 C -0.214 4.214 14 C -0.150 4.150 15 C -0.154 4.154 16 C 0.025 3.975 17 N -0.407 5.407 18 C -0.368 4.368 19 H 0.073 0.927 20 C -0.260 4.260 21 N -0.635 5.635 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.178 1.178 26 C -0.124 4.124 27 C 0.017 3.983 28 F -0.127 7.127 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.198 0.802 47 H 0.067 0.933 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.882 -30.096 5.994 31.245 hybrid contribution -0.992 0.021 0.269 1.028 sum 4.889 -30.075 6.263 31.107 Atomic orbital electron populations 1.23421 0.75771 1.05880 1.02644 1.86093 1.24067 1.26058 1.88783 1.19221 0.90884 0.86414 1.00044 1.21381 1.01466 0.90799 1.06229 1.21235 0.94123 0.98171 0.96111 1.19269 0.93539 0.94012 1.01213 1.20727 1.04924 0.94381 0.93421 1.21010 0.76337 0.80866 0.91871 1.90722 1.52270 1.55240 1.47850 1.46065 1.60728 1.20701 1.09175 1.20880 0.98064 0.93929 0.83067 0.91872 1.22097 0.96971 1.00205 1.02124 1.21745 0.96925 0.92411 1.03891 1.21647 0.98346 0.93325 1.02044 1.20861 0.86699 0.92905 0.97053 1.42777 1.11643 1.02713 1.83604 1.19072 0.97231 0.83326 1.37191 0.92672 1.25585 1.00788 0.97060 1.02529 1.69892 1.25619 1.11414 1.56595 0.85341 0.78478 0.78839 0.78702 1.19866 1.22406 1.17830 1.21020 1.01634 0.89501 1.00220 1.17268 0.86603 0.83100 1.11328 1.91444 1.76772 1.49823 1.94682 0.91622 0.86212 0.90937 0.82163 0.83203 0.84747 0.84901 0.74755 0.90917 0.90876 0.93962 0.89717 0.89276 0.91057 0.93025 0.95163 0.96287 0.80166 0.93326 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.88 10.36 -93.09 -0.96 -7.84 16 3 C 0.08 1.71 6.69 22.53 0.15 1.86 16 4 C -0.18 -3.00 9.04 22.36 0.20 -2.80 16 5 C -0.08 -1.27 9.69 22.26 0.22 -1.05 16 6 C -0.08 -1.32 4.37 -19.85 -0.09 -1.41 16 7 C -0.10 -1.07 5.83 29.10 0.17 -0.90 16 8 C 0.51 9.45 7.79 87.66 0.68 10.14 16 9 O -0.58 -16.42 15.70 -3.02 -0.05 -16.47 16 10 N -0.71 -10.68 4.53 -442.53 -2.00 -12.69 16 11 C 0.15 2.61 2.57 44.99 0.12 2.72 16 12 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 13 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 14 C -0.11 -1.98 4.75 30.59 0.15 -1.83 16 15 C -0.12 -2.90 5.22 30.60 0.16 -2.74 16 16 C 0.15 5.30 6.26 86.38 0.54 5.84 16 17 N -0.76 -34.87 5.41 -343.44 -1.86 -36.73 16 18 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 19 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.98 -62.98 13.97 21.65 0.30 -62.68 16 22 Si 0.96 44.82 27.74 68.60 1.90 46.72 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.25 -10.71 6.52 99.48 0.65 -10.06 16 26 C -0.11 -1.99 9.67 22.30 0.22 -1.77 16 27 C 0.04 0.85 7.31 22.45 0.16 1.01 16 28 F -0.15 -3.84 17.11 44.97 0.77 -3.07 16 29 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 32 H 0.16 1.78 6.30 -2.91 -0.02 1.76 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.13 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.13 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.42 3.92 8.60 -92.71 -0.80 3.12 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 42 H 0.07 1.65 7.75 -2.39 -0.02 1.63 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.37 15.87 5.53 -92.71 -0.51 15.36 16 47 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -81.11 403.03 3.52 -77.58 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.39 Total: 22.79 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.82 Total: -7.63 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.56 Total: -112.10 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.01 Total: -24.31 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.77 Total: -3.07 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Total: -81.11 3.52 -77.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675930947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.490 kcal (2) G-P(sol) polarization free energy of solvation -81.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds