Wall clock time and date at job start Tue Mar 31 2020 22:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38725 * 120.03144 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.97069 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.02959 * 359.97244 * 5 4 3 7 7 F 1.35093 * 119.97291 * 180.02562 * 6 5 4 8 8 C 1.38434 * 120.05985 * 0.02669 * 6 5 4 9 9 C 1.38169 * 120.03134 * 359.74311 * 8 6 5 10 10 C 1.50706 * 120.01835 * 180.25590 * 9 8 6 11 11 C 1.50705 * 109.46833 * 265.22924 * 10 9 8 12 12 O 1.21281 * 120.00114 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99563 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99650 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47264 * 324.99964 * 14 13 11 16 16 C 1.52998 * 109.46836 * 85.00227 * 14 13 11 17 17 C 1.53002 * 109.46626 * 204.99829 * 14 13 11 18 18 C 1.53000 * 109.47120 * 65.00598 * 17 14 13 19 19 C 1.53002 * 109.47120 * 179.97438 * 18 17 14 20 20 N 1.46492 * 109.47087 * 179.97438 * 19 18 17 21 21 C 1.36945 * 120.00026 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99529 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99692 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00551 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99489 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47242 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46950 * 120.00455 * 25 23 21 28 28 H 1.48508 * 109.47126 * 239.99966 * 25 23 21 29 29 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 30 30 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 31 31 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.01566 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.98618 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.98831 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46654 * 25.22980 * 10 9 8 36 36 H 1.09002 * 109.46776 * 145.23276 * 10 9 8 37 37 H 0.97001 * 120.00144 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47690 * 59.99930 * 16 14 13 39 39 H 1.09002 * 109.46744 * 179.97438 * 16 14 13 40 40 H 1.09000 * 109.47413 * 299.99609 * 16 14 13 41 41 H 1.09007 * 109.46820 * 184.99957 * 17 14 13 42 42 H 1.08995 * 109.47614 * 304.99998 * 17 14 13 43 43 H 1.09007 * 109.46750 * 299.99402 * 18 17 14 44 44 H 1.08995 * 109.47366 * 59.99249 * 18 17 14 45 45 H 1.09007 * 109.46820 * 299.99359 * 19 18 17 46 46 H 1.08995 * 109.47614 * 59.99401 * 19 18 17 47 47 H 0.96999 * 120.00163 * 359.97438 * 20 19 18 48 48 H 0.96998 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3026 3.6769 0.0016 7 9 3.9160 4.8806 0.0027 8 6 4.0572 2.5163 0.0011 9 6 3.4312 1.2846 0.0054 10 6 4.2529 0.0212 0.0107 11 6 4.4286 -0.4696 -1.4033 12 8 3.9347 0.1456 -2.3246 13 7 5.1345 -1.5922 -1.6441 14 6 5.3058 -2.0690 -3.0187 15 1 4.4037 -1.8561 -3.5922 16 6 6.4981 -1.3569 -3.6607 17 6 5.5587 -3.5779 -3.0072 18 6 4.3164 -4.2992 -2.4805 19 6 4.5691 -5.8082 -2.4695 20 7 3.3799 -6.4988 -1.9646 21 6 3.3720 -7.8646 -1.8646 22 1 4.2423 -8.4325 -2.1584 23 6 2.2453 -8.5188 -1.3857 24 7 1.1845 -7.8267 -1.0281 25 14 2.2343 -10.3819 -1.2500 26 1 3.5385 -10.9197 -1.7137 27 1 2.0115 -10.7738 0.1649 28 1 1.1438 -10.9333 -2.0939 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3195 0.0005 33 1 1.3323 4.5114 0.0019 34 1 5.1356 2.5736 0.0012 35 1 5.2300 0.2253 0.4485 36 1 3.7429 -0.7414 0.5993 37 1 5.5292 -2.0844 -0.9073 38 1 7.4003 -1.5698 -3.0872 39 1 6.6258 -1.7121 -4.6833 40 1 6.3180 -0.2820 -3.6688 41 1 5.7740 -3.9180 -4.0203 42 1 6.4084 -3.7991 -2.3615 43 1 4.1011 -3.9592 -1.4674 44 1 3.4667 -4.0781 -3.1262 45 1 4.7841 -6.1479 -3.4828 46 1 5.4190 -6.0297 -1.8240 47 1 2.5981 -5.9887 -1.7011 48 1 0.3974 -8.2839 -0.6930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675997685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:19 Heat of formation + Delta-G solvation = -99.846982 kcal Electronic energy + Delta-G solvation = -28859.747755 eV Core-core repulsion = 24636.306979 eV Total energy + Delta-G solvation = -4223.440775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.01691 -40.69711 -39.56491 -37.50138 -36.67789 -34.80771 -33.28793 -32.49534 -31.11646 -30.08759 -29.40048 -28.09778 -27.20270 -25.63840 -23.25059 -22.70006 -22.36843 -21.02463 -20.73515 -20.41514 -18.31538 -17.40228 -17.23012 -17.19654 -16.99470 -16.20326 -15.93724 -15.57585 -15.15694 -14.94398 -14.77560 -14.65799 -14.44846 -13.92588 -13.84544 -13.55678 -13.49787 -13.27157 -13.04563 -12.94387 -12.71937 -12.50123 -12.16819 -12.09337 -12.06586 -11.91176 -11.28844 -11.15342 -11.12434 -11.09964 -10.86570 -10.78638 -10.43761 -10.37822 -9.98016 -9.89731 -9.68103 -9.27984 -9.03742 -8.86097 -8.27760 -6.90176 -5.75508 -3.03911 0.84171 0.98638 2.68133 3.02601 3.06978 3.43304 3.44499 3.48768 3.51163 4.01801 4.28509 4.39762 4.57292 4.69214 4.74669 4.79779 4.91017 4.98422 5.02651 5.06744 5.13136 5.15339 5.19533 5.37499 5.39321 5.45052 5.58232 5.59053 5.62407 5.66341 5.81536 5.82920 5.84209 5.99601 6.02904 6.09274 6.15904 6.24379 6.38329 6.43465 6.44476 6.55302 6.89210 6.92388 7.09350 7.51852 7.71172 8.26062 8.43752 9.54585 10.14021 10.48346 11.47590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.002312 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.917023 B =12105.899997 C =13800.628636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.139 3.861 4 C -0.182 4.182 5 C -0.112 4.112 6 C 0.057 3.943 7 F -0.143 7.143 8 C -0.102 4.102 9 C -0.069 4.069 10 C -0.097 4.097 11 C 0.520 3.480 12 O -0.535 6.535 13 N -0.722 5.722 14 C 0.142 3.858 15 H 0.087 0.913 16 C -0.162 4.162 17 C -0.122 4.122 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.401 0.599 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 23.879 3.239 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.093 3.907 4 C -0.201 4.201 5 C -0.131 4.131 6 C 0.038 3.962 7 F -0.122 7.122 8 C -0.121 4.121 9 C -0.070 4.070 10 C -0.137 4.137 11 C 0.306 3.694 12 O -0.412 6.412 13 N -0.374 5.374 14 C 0.038 3.962 15 H 0.105 0.895 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.163 4.163 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.235 0.765 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.357 23.980 2.541 24.703 hybrid contribution -0.346 -0.779 0.518 0.998 sum 5.011 23.201 3.059 23.933 Atomic orbital electron populations 1.23149 0.77810 1.04785 1.01174 1.86140 1.21773 1.25960 1.87952 1.18810 0.91634 0.84771 0.95455 1.21057 1.00485 0.91268 1.07253 1.20889 0.92676 0.98668 1.00906 1.17435 0.90813 0.80473 1.07517 1.91480 1.83321 1.42945 1.94438 1.20777 1.00517 0.90079 1.00736 1.18400 0.90332 0.94043 1.04245 1.20527 1.01319 0.96118 0.95762 1.20371 0.77666 0.80525 0.90808 1.90704 1.47994 1.56478 1.45999 1.46077 1.55021 1.26832 1.09515 1.21013 0.99142 0.93546 0.82538 0.89467 1.22168 0.97959 1.01043 1.00821 1.21846 0.99093 0.92540 1.02608 1.21722 0.96988 0.96249 1.01300 1.20651 0.90903 0.89575 0.96359 1.42394 1.13586 1.04112 1.77770 1.19294 0.98877 0.83137 1.35579 0.91171 1.24751 0.96329 0.97915 1.02211 1.69673 1.04394 1.34061 1.50153 0.86118 0.77241 0.85600 0.77258 1.20567 1.21872 1.21878 0.92581 0.92480 0.87544 0.84376 0.84584 0.84246 0.87827 0.86938 0.76504 0.92574 0.91660 0.92393 0.90397 0.91446 0.91977 0.92037 0.96551 0.96582 0.78335 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.64 9.63 -19.57 -0.19 -3.83 16 3 C 0.14 1.60 6.66 -39.23 -0.26 1.34 16 4 C -0.18 -1.75 9.04 -39.44 -0.36 -2.11 16 5 C -0.11 -1.06 10.02 -39.53 -0.40 -1.46 16 6 C 0.06 0.60 7.30 -39.42 -0.29 0.32 16 7 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 8 C -0.10 -1.05 9.66 -39.53 -0.38 -1.44 16 9 C -0.07 -0.76 4.39 -104.48 -0.46 -1.22 16 10 C -0.10 -0.94 5.55 -29.03 -0.16 -1.10 16 11 C 0.52 6.48 7.79 -10.98 -0.09 6.39 16 12 O -0.54 -8.76 15.70 5.56 0.09 -8.68 16 13 N -0.72 -7.81 4.53 -53.80 -0.24 -8.05 16 14 C 0.14 1.65 2.58 -67.93 -0.17 1.47 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 17 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 18 C -0.12 -1.97 5.22 -26.73 -0.14 -2.11 16 19 C 0.15 3.06 6.26 -4.04 -0.03 3.04 16 20 N -0.73 -18.97 5.60 -59.91 -0.34 -19.31 16 21 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.11 1.04 7.69 -51.93 -0.40 0.64 16 37 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 10.42 7.67 -40.82 -0.31 10.10 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -35.19 405.14 -8.19 -43.38 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.60 Total: 8.20 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.76 Total: -6.00 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.15 Total: -55.14 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.10 Total: -12.51 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.19 -8.19 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675997685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.466 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds