Wall clock time and date at job start Tue Mar 31 2020 22:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38725 * 120.03144 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.97069 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.02959 * 359.97244 * 5 4 3 7 7 F 1.35093 * 119.97291 * 180.02562 * 6 5 4 8 8 C 1.38434 * 120.05985 * 0.02669 * 6 5 4 9 9 C 1.38169 * 120.03134 * 359.74311 * 8 6 5 10 10 C 1.50706 * 120.01835 * 180.25590 * 9 8 6 11 11 C 1.50705 * 109.46833 * 265.22924 * 10 9 8 12 12 O 1.21281 * 120.00114 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99563 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99650 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47264 * 324.99964 * 14 13 11 16 16 C 1.52998 * 109.46836 * 85.00227 * 14 13 11 17 17 C 1.53002 * 109.46626 * 204.99829 * 14 13 11 18 18 C 1.53000 * 109.47120 * 65.00598 * 17 14 13 19 19 C 1.53002 * 109.47120 * 179.97438 * 18 17 14 20 20 N 1.46492 * 109.47087 * 179.97438 * 19 18 17 21 21 C 1.36945 * 120.00026 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99529 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99692 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00551 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99489 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47242 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46950 * 120.00455 * 25 23 21 28 28 H 1.48508 * 109.47126 * 239.99966 * 25 23 21 29 29 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 30 30 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 31 31 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.01566 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.98618 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.98831 * 179.97438 * 8 6 5 35 35 H 1.08997 * 109.46654 * 25.22980 * 10 9 8 36 36 H 1.09002 * 109.46776 * 145.23276 * 10 9 8 37 37 H 0.97001 * 120.00144 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47690 * 59.99930 * 16 14 13 39 39 H 1.09002 * 109.46744 * 179.97438 * 16 14 13 40 40 H 1.09000 * 109.47413 * 299.99609 * 16 14 13 41 41 H 1.09007 * 109.46820 * 184.99957 * 17 14 13 42 42 H 1.08995 * 109.47614 * 304.99998 * 17 14 13 43 43 H 1.09007 * 109.46750 * 299.99402 * 18 17 14 44 44 H 1.08995 * 109.47366 * 59.99249 * 18 17 14 45 45 H 1.09007 * 109.46820 * 299.99359 * 19 18 17 46 46 H 1.08995 * 109.47614 * 59.99401 * 19 18 17 47 47 H 0.96999 * 120.00163 * 359.97438 * 20 19 18 48 48 H 0.96998 * 120.00111 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3026 3.6769 0.0016 7 9 3.9160 4.8806 0.0027 8 6 4.0572 2.5163 0.0011 9 6 3.4312 1.2846 0.0054 10 6 4.2529 0.0212 0.0107 11 6 4.4286 -0.4696 -1.4033 12 8 3.9347 0.1456 -2.3246 13 7 5.1345 -1.5922 -1.6441 14 6 5.3058 -2.0690 -3.0187 15 1 4.4037 -1.8561 -3.5922 16 6 6.4981 -1.3569 -3.6607 17 6 5.5587 -3.5779 -3.0072 18 6 4.3164 -4.2992 -2.4805 19 6 4.5691 -5.8082 -2.4695 20 7 3.3799 -6.4988 -1.9646 21 6 3.3720 -7.8646 -1.8646 22 1 4.2423 -8.4325 -2.1584 23 6 2.2453 -8.5188 -1.3857 24 7 1.1845 -7.8267 -1.0281 25 14 2.2343 -10.3819 -1.2500 26 1 3.5385 -10.9197 -1.7137 27 1 2.0115 -10.7738 0.1649 28 1 1.1438 -10.9333 -2.0939 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3195 0.0005 33 1 1.3323 4.5114 0.0019 34 1 5.1356 2.5736 0.0012 35 1 5.2300 0.2253 0.4485 36 1 3.7429 -0.7414 0.5993 37 1 5.5292 -2.0844 -0.9073 38 1 7.4003 -1.5698 -3.0872 39 1 6.6258 -1.7121 -4.6833 40 1 6.3180 -0.2820 -3.6688 41 1 5.7740 -3.9180 -4.0203 42 1 6.4084 -3.7991 -2.3615 43 1 4.1011 -3.9592 -1.4674 44 1 3.4667 -4.0781 -3.1262 45 1 4.7841 -6.1479 -3.4828 46 1 5.4190 -6.0297 -1.8240 47 1 2.5981 -5.9887 -1.7011 48 1 0.3974 -8.2839 -0.6930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675997685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:19 Heat of formation + Delta-G solvation = -122.490869 kcal Electronic energy + Delta-G solvation = -28860.729667 eV Core-core repulsion = 24636.306979 eV Total energy + Delta-G solvation = -4224.422688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.83078 -41.51162 -40.49218 -38.31418 -37.84037 -36.47077 -34.23472 -33.97231 -32.47116 -30.97451 -30.73820 -28.84707 -27.93212 -27.20899 -24.85085 -23.64424 -23.21807 -22.38519 -21.82206 -21.36483 -19.13029 -19.06502 -18.21920 -18.09745 -18.00921 -17.17482 -16.76925 -16.58827 -16.36518 -16.10475 -15.85898 -15.66423 -15.42972 -15.38047 -15.24727 -14.80460 -14.53195 -14.25955 -14.17744 -13.78386 -13.73660 -13.40487 -13.26610 -13.15729 -12.99729 -12.82229 -12.80027 -12.68246 -12.36668 -12.19664 -12.03710 -11.88822 -11.85786 -11.81158 -11.69841 -11.47358 -10.94005 -10.89931 -10.04794 -9.99649 -9.07132 -8.99910 -7.95399 -5.24610 0.09486 0.19793 1.47368 1.48463 1.58658 1.73500 2.21998 2.31195 2.55985 2.64664 3.25584 3.38296 3.55182 3.65331 3.70368 3.95317 4.01129 4.09891 4.12295 4.14226 4.30106 4.34089 4.37012 4.40234 4.43224 4.45881 4.61160 4.69504 4.71018 4.72526 4.83794 4.87685 4.88626 4.96016 5.03284 5.08225 5.09841 5.15434 5.27219 5.33111 5.40586 5.44715 5.51661 5.65228 5.70264 6.27431 6.34171 6.64789 7.32798 7.35398 8.10044 8.32196 9.28599 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.002312 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.917023 B =12105.899997 C =13800.628636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.120 3.880 4 C -0.184 4.184 5 C -0.112 4.112 6 C 0.040 3.960 7 F -0.148 7.148 8 C -0.106 4.106 9 C -0.086 4.086 10 C -0.092 4.092 11 C 0.517 3.483 12 O -0.580 6.580 13 N -0.714 5.714 14 C 0.145 3.855 15 H 0.058 0.942 16 C -0.153 4.153 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.150 3.850 20 N -0.751 5.751 21 C -0.245 4.245 22 H 0.077 0.923 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.975 3.025 26 H -0.265 1.265 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.413 0.587 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.372 0.628 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 23.797 3.618 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.074 3.926 4 C -0.202 4.202 5 C -0.131 4.131 6 C 0.021 3.979 7 F -0.127 7.127 8 C -0.125 4.125 9 C -0.088 4.088 10 C -0.131 4.131 11 C 0.305 3.695 12 O -0.460 6.460 13 N -0.367 5.367 14 C 0.040 3.960 15 H 0.076 0.924 16 C -0.211 4.211 17 C -0.147 4.147 18 C -0.149 4.149 19 C 0.024 3.976 20 N -0.393 5.393 21 C -0.377 4.377 22 H 0.095 0.905 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.189 1.189 27 H -0.218 1.218 28 H -0.221 1.221 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.134 0.866 37 H 0.250 0.750 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.203 0.797 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.938 23.888 2.922 25.046 hybrid contribution -0.813 -0.724 0.368 1.149 sum 6.125 23.164 3.291 24.185 Atomic orbital electron populations 1.23333 0.76531 1.05260 1.02499 1.86093 1.23338 1.26646 1.88210 1.19129 0.92230 0.85174 0.96100 1.21328 1.01611 0.90761 1.06545 1.21177 0.92523 0.99525 0.99863 1.17674 0.91503 0.80438 1.08292 1.91463 1.83473 1.43181 1.94566 1.20983 1.01453 0.89792 1.00247 1.18647 0.90642 0.94768 1.04713 1.20564 1.03008 0.95639 0.93931 1.20866 0.76860 0.80326 0.91495 1.90681 1.49863 1.57909 1.47550 1.46040 1.54483 1.26432 1.09737 1.20905 0.98733 0.93568 0.82797 0.92380 1.22083 0.97694 0.99752 1.01608 1.21745 0.97569 0.91922 1.03456 1.21575 0.98392 0.93902 1.01062 1.20859 0.89110 0.91624 0.96023 1.42664 1.14921 1.03692 1.78019 1.19711 0.98942 0.84553 1.34498 0.90515 1.25620 0.96182 1.02611 1.02711 1.69831 1.04980 1.35800 1.51563 0.85048 0.77621 0.80045 0.76897 1.18905 1.21845 1.22106 0.90424 0.91944 0.87587 0.82236 0.82345 0.82656 0.84452 0.86649 0.74996 0.90677 0.90657 0.93902 0.89414 0.89178 0.92222 0.93920 0.96385 0.95525 0.79693 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -7.95 9.63 -92.94 -0.90 -8.85 16 3 C 0.12 2.73 6.66 22.49 0.15 2.88 16 4 C -0.18 -3.40 9.04 22.36 0.20 -3.20 16 5 C -0.11 -2.01 10.02 22.30 0.22 -1.79 16 6 C 0.04 0.83 7.30 22.37 0.16 0.99 16 7 F -0.15 -3.17 17.27 44.97 0.78 -2.40 16 8 C -0.11 -2.12 9.66 22.30 0.22 -1.91 16 9 C -0.09 -1.88 4.39 -19.77 -0.09 -1.97 16 10 C -0.09 -1.69 5.55 29.11 0.16 -1.53 16 11 C 0.52 12.71 7.79 87.66 0.68 13.39 16 12 O -0.58 -19.41 15.70 -3.03 -0.05 -19.45 16 13 N -0.71 -14.64 4.53 -442.53 -2.00 -16.64 16 14 C 0.14 3.20 2.58 44.99 0.12 3.32 16 15 H 0.06 1.65 7.58 -2.39 -0.02 1.64 16 16 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 17 C -0.11 -2.35 4.75 30.59 0.15 -2.20 16 18 C -0.11 -3.44 5.22 30.59 0.16 -3.28 16 19 C 0.15 5.86 6.26 86.38 0.54 6.40 16 20 N -0.75 -38.84 5.60 -343.46 -1.92 -40.76 16 21 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 25 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.06 0.95 7.66 -2.38 -0.02 0.94 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.16 2.09 6.30 -2.91 -0.02 2.07 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.14 1.50 8.05 -2.39 -0.02 1.48 16 36 H 0.12 2.06 7.69 -2.39 -0.02 2.04 16 37 H 0.41 6.31 8.60 -92.71 -0.80 5.51 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.87 7.75 -2.38 -0.02 1.85 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 48 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.66 405.14 3.46 -73.21 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.53 Total: 33.16 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.77 Total: -6.76 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -3.65 Total: -117.14 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.94 Total: -28.30 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.66 3.46 -73.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675997685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.285 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds