Wall clock time and date at job start Tue Mar 31 2020 22:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50707 * 119.99821 * 2 1 4 4 C 1.53000 * 109.46584 * 125.00198 * 3 2 1 5 5 C 1.53001 * 109.46573 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47510 * 304.99867 * 5 4 3 7 7 C 1.53001 * 109.46925 * 184.99875 * 5 4 3 8 8 N 1.46906 * 109.47175 * 65.00315 * 5 4 3 9 9 C 1.46761 * 111.14302 * 56.89624 * 8 5 4 10 10 C 1.50142 * 110.41820 * 174.11286 * 9 8 5 11 11 C 1.29821 * 123.28645 * 343.08797 * 10 9 8 12 12 C 1.50709 * 118.55623 * 180.37145 * 11 10 9 13 13 N 1.46495 * 109.47024 * 95.01844 * 12 11 10 14 14 C 1.34778 * 119.99860 * 179.97438 * 13 12 11 15 15 O 1.21272 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99763 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46921 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00021 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99529 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99979 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99902 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47572 * 89.99787 * 22 20 18 24 24 H 1.48497 * 109.47177 * 209.99830 * 22 20 18 25 25 H 1.48503 * 109.47092 * 329.99651 * 22 20 18 26 26 C 1.50304 * 122.89323 * 0.39317 * 11 10 9 27 27 C 1.47239 * 111.00004 * 179.97438 * 8 5 4 28 28 H 1.08000 * 119.99994 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99831 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99831 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47115 * 5.00203 * 3 2 1 32 32 H 1.09002 * 109.46909 * 245.00114 * 3 2 1 33 33 H 1.08997 * 109.47177 * 60.00630 * 4 3 2 34 34 H 1.08992 * 109.47476 * 299.99619 * 4 3 2 35 35 H 1.09002 * 109.46955 * 60.00093 * 7 5 4 36 36 H 1.09002 * 109.47458 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47537 * 300.00240 * 7 5 4 38 38 H 1.08992 * 109.15568 * 53.89616 * 9 8 5 39 39 H 1.09005 * 109.24543 * 294.38832 * 9 8 5 40 40 H 1.08006 * 118.36072 * 163.06081 * 10 9 8 41 41 H 1.09000 * 109.46802 * 215.02348 * 12 11 10 42 42 H 1.09002 * 109.46837 * 335.02187 * 12 11 10 43 43 H 0.97003 * 120.00137 * 0.02562 * 13 12 11 44 44 H 1.09000 * 109.47175 * 300.00429 * 16 14 13 45 45 H 1.09002 * 109.47265 * 60.00383 * 16 14 13 46 46 H 0.96997 * 119.99976 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.43124 * 223.40516 * 26 11 10 48 48 H 1.09006 * 109.42944 * 103.55645 * 26 11 10 49 49 H 1.09002 * 109.63847 * 48.11079 * 27 8 5 50 50 H 1.08999 * 109.63658 * 287.70548 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8005 2.6578 1.1813 6 1 4.2866 2.7964 0.2156 7 6 4.8585 2.6358 2.2863 8 7 2.8644 3.7643 1.4216 9 6 2.1345 3.5761 2.6808 10 6 1.2903 4.7806 2.9819 11 6 1.4638 5.9333 2.4104 12 6 0.5590 7.0739 2.7996 13 7 1.2048 7.8758 3.8417 14 6 0.5769 8.9561 4.3468 15 8 -0.5229 9.2640 3.9390 16 6 1.2416 9.7814 5.4185 17 16 0.1548 11.1512 5.8860 18 6 1.1514 11.9268 7.1148 19 1 2.1206 11.5185 7.3607 20 6 0.6914 13.0630 7.7658 21 7 1.4358 13.6421 8.6841 22 14 -0.9844 13.7696 7.3399 23 1 -2.0172 13.1543 8.2117 24 1 -0.9702 15.2394 7.5511 25 1 -1.2983 13.4768 5.9183 26 6 2.5272 6.1802 1.3772 27 6 3.5674 5.0580 1.4286 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 3.7400 0.5066 1.0920 34 1 2.4773 1.2356 2.1130 35 1 5.5530 1.8148 2.1080 36 1 5.4041 3.5794 2.2858 37 1 4.3724 2.4973 3.2520 38 1 2.8495 3.4253 3.4895 39 1 1.4939 2.6982 2.5971 40 1 0.4986 4.6832 3.7101 41 1 0.3663 7.6986 1.9274 42 1 -0.3832 6.6774 3.1779 43 1 2.0847 7.6297 4.1676 44 1 1.4343 9.1569 6.2908 45 1 2.1838 10.1776 5.0399 46 1 1.1142 14.4359 9.1393 47 1 3.0135 7.1347 1.5783 48 1 2.0716 6.2077 0.3873 49 1 4.2210 5.1245 0.5589 50 1 4.1593 5.1483 2.3394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677533772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:40 Heat of formation + Delta-G solvation = -10.249980 kcal Electronic energy + Delta-G solvation = -26220.762740 eV Core-core repulsion = 22567.420358 eV Total energy + Delta-G solvation = -3653.342382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25368 -39.18613 -36.99183 -35.32740 -33.75484 -32.43619 -31.63886 -31.00829 -29.64725 -29.08104 -26.56839 -25.59303 -24.47417 -24.05922 -22.65993 -20.51574 -20.48200 -20.03553 -18.13189 -17.47855 -17.06870 -16.35196 -16.12458 -15.61567 -15.60410 -15.16365 -15.05372 -14.93560 -14.44445 -14.24390 -13.92497 -13.79481 -13.63794 -13.44345 -13.23736 -13.09750 -12.88009 -12.78743 -12.54868 -12.37534 -12.11494 -11.88537 -11.80555 -11.53471 -11.34156 -11.26353 -11.22021 -11.00428 -10.78801 -10.75043 -10.57911 -9.86841 -9.67847 -9.65344 -9.13653 -9.01234 -8.94085 -8.62611 -8.49340 -6.91243 -6.28632 -4.00264 1.76450 1.93817 2.83285 2.99498 3.33222 3.41837 3.46004 3.51297 3.75917 4.22177 4.29821 4.33720 4.46697 4.59046 4.60212 4.75308 4.82333 4.85052 4.86750 4.91828 4.99425 5.03606 5.10201 5.10488 5.18495 5.25142 5.29887 5.31288 5.39629 5.42916 5.46038 5.52588 5.57678 5.63982 5.67330 5.74780 5.77877 5.79915 5.82313 5.92767 6.02000 6.12250 6.30066 6.44455 6.52519 6.60966 6.67241 6.79184 7.63880 7.94441 8.41794 8.50841 9.17632 10.80590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.001763 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.498461 B =15877.914504 C =16467.222072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.109 4.109 5 C 0.079 3.921 6 H 0.085 0.915 7 C -0.190 4.190 8 N -0.523 5.523 9 C 0.076 3.924 10 C -0.137 4.137 11 C -0.129 4.129 12 C 0.156 3.844 13 N -0.732 5.732 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.078 4.078 27 C 0.051 3.949 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.399 0.601 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -28.228 -17.696 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.175 4.175 3 C -0.126 4.126 4 C -0.147 4.147 5 C -0.029 4.029 6 H 0.103 0.897 7 C -0.249 4.249 8 N -0.247 5.247 9 C -0.051 4.051 10 C -0.156 4.156 11 C -0.130 4.130 12 C 0.033 3.967 13 N -0.387 5.387 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.115 4.115 27 C -0.076 4.076 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.233 0.767 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.306 -27.548 -18.642 33.540 hybrid contribution 1.671 -0.102 1.439 2.207 sum 5.977 -27.650 -17.203 33.109 Atomic orbital electron populations 1.23884 0.96082 1.01815 1.01441 1.23036 0.96095 0.98636 0.99692 1.20697 0.98509 0.95310 0.98063 1.21649 0.98038 0.95852 0.99151 1.21806 0.91448 0.91004 0.98690 0.89693 1.22500 0.99835 1.02472 1.00084 1.62582 1.26800 1.01689 1.33637 1.21050 0.96244 0.97200 0.90584 1.22205 0.99936 0.93776 0.99691 1.20999 0.98554 0.94719 0.98701 1.20281 0.94539 0.90657 0.91271 1.46017 1.22132 1.29132 1.41384 1.20296 0.85747 0.80017 0.82376 1.90699 1.19811 1.68988 1.59977 1.23278 1.03745 1.00961 0.99430 1.84791 1.27084 1.28491 1.51185 1.22322 1.06365 1.15257 1.22973 0.89411 1.24711 0.97653 0.95311 0.93632 1.69938 1.37371 1.20433 1.23966 0.86731 0.84070 0.79041 0.81992 1.19212 1.19939 1.15910 1.20487 0.94630 0.97973 0.98421 1.22192 0.95455 0.88974 1.01022 0.88834 0.88462 0.87882 0.90142 0.91383 0.91596 0.91555 0.91941 0.92227 0.92212 0.93100 0.89327 0.86820 0.91057 0.91221 0.76738 0.88569 0.88498 0.91953 0.90446 0.89933 0.90451 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 14.32 29.01 0.42 -0.81 16 2 C -0.16 -0.94 9.52 -36.02 -0.34 -1.28 16 3 C -0.09 -0.52 5.54 -27.88 -0.15 -0.68 16 4 C -0.11 -0.57 4.37 -26.73 -0.12 -0.68 16 5 C 0.08 0.43 2.39 -67.71 -0.16 0.27 16 6 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 7 C -0.19 -1.00 8.51 37.16 0.32 -0.69 16 8 N -0.52 -3.51 4.20 -228.18 -0.96 -4.47 16 9 C 0.08 0.54 4.84 -5.32 -0.03 0.51 16 10 C -0.14 -1.14 9.50 -35.96 -0.34 -1.48 16 11 C -0.13 -1.15 5.26 -100.92 -0.53 -1.68 16 12 C 0.16 1.79 5.72 -5.19 -0.03 1.76 16 13 N -0.73 -9.43 5.55 -61.47 -0.34 -9.77 16 14 C 0.53 9.47 7.85 -10.98 -0.09 9.39 16 15 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 22 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 C -0.08 -0.60 6.04 -28.02 -0.17 -0.77 16 27 C 0.05 0.35 4.78 -3.59 -0.02 0.33 16 28 H 0.09 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 30 H 0.10 0.54 8.06 -52.49 -0.42 0.11 16 31 H 0.08 0.58 7.40 -51.93 -0.38 0.20 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.38 6.22 -51.93 -0.32 0.05 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.34 6.69 -51.93 -0.35 -0.01 16 37 H 0.06 0.34 6.35 -51.93 -0.33 0.01 16 38 H 0.05 0.36 6.09 -51.93 -0.32 0.04 16 39 H 0.09 0.60 6.47 -51.93 -0.34 0.27 16 40 H 0.11 0.95 7.81 -52.48 -0.41 0.54 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 43 H 0.40 4.15 8.46 -40.82 -0.35 3.80 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 50 H 0.04 0.29 6.98 -51.93 -0.36 -0.07 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -33.10 409.04 -10.40 -43.50 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.62 Total: 0.19 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.81 Total: -10.06 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.52 Total: -40.09 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.10 -10.40 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.252 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds