Wall clock time and date at job start Tue Mar 31 2020 22:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50707 * 119.99821 * 2 1 4 4 C 1.53000 * 109.46584 * 125.00198 * 3 2 1 5 5 C 1.53001 * 109.46573 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47510 * 304.99867 * 5 4 3 7 7 C 1.53001 * 109.46925 * 184.99875 * 5 4 3 8 8 N 1.46906 * 109.47175 * 65.00315 * 5 4 3 9 9 C 1.46761 * 111.14302 * 56.89624 * 8 5 4 10 10 C 1.50142 * 110.41820 * 174.11286 * 9 8 5 11 11 C 1.29821 * 123.28645 * 343.08797 * 10 9 8 12 12 C 1.50709 * 118.55623 * 180.37145 * 11 10 9 13 13 N 1.46495 * 109.47024 * 95.01844 * 12 11 10 14 14 C 1.34778 * 119.99860 * 179.97438 * 13 12 11 15 15 O 1.21272 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99763 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46921 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00021 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99529 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99979 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99902 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00161 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47572 * 89.99787 * 22 20 18 24 24 H 1.48497 * 109.47177 * 209.99830 * 22 20 18 25 25 H 1.48503 * 109.47092 * 329.99651 * 22 20 18 26 26 C 1.50304 * 122.89323 * 0.39317 * 11 10 9 27 27 C 1.47239 * 111.00004 * 179.97438 * 8 5 4 28 28 H 1.08000 * 119.99994 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99831 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99831 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47115 * 5.00203 * 3 2 1 32 32 H 1.09002 * 109.46909 * 245.00114 * 3 2 1 33 33 H 1.08997 * 109.47177 * 60.00630 * 4 3 2 34 34 H 1.08992 * 109.47476 * 299.99619 * 4 3 2 35 35 H 1.09002 * 109.46955 * 60.00093 * 7 5 4 36 36 H 1.09002 * 109.47458 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47537 * 300.00240 * 7 5 4 38 38 H 1.08992 * 109.15568 * 53.89616 * 9 8 5 39 39 H 1.09005 * 109.24543 * 294.38832 * 9 8 5 40 40 H 1.08006 * 118.36072 * 163.06081 * 10 9 8 41 41 H 1.09000 * 109.46802 * 215.02348 * 12 11 10 42 42 H 1.09002 * 109.46837 * 335.02187 * 12 11 10 43 43 H 0.97003 * 120.00137 * 0.02562 * 13 12 11 44 44 H 1.09000 * 109.47175 * 300.00429 * 16 14 13 45 45 H 1.09002 * 109.47265 * 60.00383 * 16 14 13 46 46 H 0.96997 * 119.99976 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.43124 * 223.40516 * 26 11 10 48 48 H 1.09006 * 109.42944 * 103.55645 * 26 11 10 49 49 H 1.09002 * 109.63847 * 48.11079 * 27 8 5 50 50 H 1.08999 * 109.63658 * 287.70548 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8005 2.6578 1.1813 6 1 4.2866 2.7964 0.2156 7 6 4.8585 2.6358 2.2863 8 7 2.8644 3.7643 1.4216 9 6 2.1345 3.5761 2.6808 10 6 1.2903 4.7806 2.9819 11 6 1.4638 5.9333 2.4104 12 6 0.5590 7.0739 2.7996 13 7 1.2048 7.8758 3.8417 14 6 0.5769 8.9561 4.3468 15 8 -0.5229 9.2640 3.9390 16 6 1.2416 9.7814 5.4185 17 16 0.1548 11.1512 5.8860 18 6 1.1514 11.9268 7.1148 19 1 2.1206 11.5185 7.3607 20 6 0.6914 13.0630 7.7658 21 7 1.4358 13.6421 8.6841 22 14 -0.9844 13.7696 7.3399 23 1 -2.0172 13.1543 8.2117 24 1 -0.9702 15.2394 7.5511 25 1 -1.2983 13.4768 5.9183 26 6 2.5272 6.1802 1.3772 27 6 3.5674 5.0580 1.4286 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 3.7400 0.5066 1.0920 34 1 2.4773 1.2356 2.1130 35 1 5.5530 1.8148 2.1080 36 1 5.4041 3.5794 2.2858 37 1 4.3724 2.4973 3.2520 38 1 2.8495 3.4253 3.4895 39 1 1.4939 2.6982 2.5971 40 1 0.4986 4.6832 3.7101 41 1 0.3663 7.6986 1.9274 42 1 -0.3832 6.6774 3.1779 43 1 2.0847 7.6297 4.1676 44 1 1.4343 9.1569 6.2908 45 1 2.1838 10.1776 5.0399 46 1 1.1142 14.4359 9.1393 47 1 3.0135 7.1347 1.5783 48 1 2.0716 6.2077 0.3873 49 1 4.2210 5.1245 0.5589 50 1 4.1593 5.1483 2.3394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677533772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:39 Heat of formation + Delta-G solvation = -30.812835 kcal Electronic energy + Delta-G solvation = -26221.654412 eV Core-core repulsion = 22567.420358 eV Total energy + Delta-G solvation = -3654.234054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99139 -40.38190 -37.70114 -36.04478 -34.70373 -34.63969 -32.37091 -31.71156 -30.78717 -29.67228 -27.91426 -27.33719 -24.97202 -24.76642 -23.25837 -21.85500 -21.01641 -20.49720 -19.97123 -18.45481 -17.79023 -17.64750 -17.22907 -17.02930 -16.68254 -16.12304 -15.99780 -15.78997 -15.57898 -15.10327 -14.94878 -14.88292 -14.69280 -14.42195 -14.33440 -13.94627 -13.75605 -13.62520 -13.36324 -13.31571 -13.09922 -13.01956 -12.81547 -12.72257 -12.57055 -12.34898 -12.07575 -11.87262 -11.83315 -11.69331 -11.37324 -11.23199 -11.17452 -11.09900 -10.54356 -10.16850 -10.13360 -9.88946 -9.14712 -9.00244 -8.51896 -6.22847 0.89372 1.10948 1.31274 1.47164 1.47786 1.55066 1.59190 2.24463 2.39408 2.73709 2.86363 2.95850 3.57874 3.74740 3.85230 3.88467 4.12936 4.14127 4.20914 4.25992 4.31752 4.38157 4.38824 4.45673 4.47940 4.55729 4.57517 4.60535 4.68235 4.73731 4.78587 4.88854 4.90895 4.95269 5.03094 5.08295 5.11725 5.15416 5.28434 5.34293 5.37837 5.45963 5.48715 5.70347 5.83458 5.93101 5.98646 6.10913 6.14397 6.26131 6.45187 6.93298 7.16897 8.60440 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.001763 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.498461 B =15877.914504 C =16467.222072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.084 4.084 4 C -0.104 4.104 5 C 0.081 3.919 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.529 5.529 9 C 0.079 3.921 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.159 3.841 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.075 4.075 27 C 0.054 3.946 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.414 0.586 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.277 0.723 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -29.918 -18.706 35.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.176 4.176 3 C -0.122 4.122 4 C -0.142 4.142 5 C -0.027 4.027 6 H 0.106 0.894 7 C -0.245 4.245 8 N -0.253 5.253 9 C -0.048 4.048 10 C -0.149 4.149 11 C -0.134 4.134 12 C 0.036 3.964 13 N -0.360 5.360 14 C 0.320 3.680 15 O -0.442 6.442 16 C -0.261 4.261 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.113 4.113 27 C -0.073 4.073 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.251 0.749 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.904 -29.276 -19.658 35.603 hybrid contribution 1.597 0.251 1.708 2.352 sum 6.501 -29.025 -17.950 34.741 Atomic orbital electron populations 1.23969 0.96396 1.01956 1.01980 1.23169 0.96098 0.99106 0.99199 1.20640 0.98306 0.94714 0.98509 1.21606 0.97954 0.96064 0.98532 1.21818 0.91293 0.90624 0.98957 0.89353 1.22456 0.99752 1.02646 0.99626 1.62586 1.27302 1.02085 1.33356 1.21030 0.96249 0.96542 0.90993 1.22362 0.99583 0.94012 0.98900 1.20843 0.98938 0.93895 0.99733 1.20329 0.94834 0.91035 0.90242 1.45810 1.22313 1.27321 1.40570 1.19982 0.85169 0.80815 0.82003 1.90689 1.21644 1.70430 1.61460 1.23267 1.02935 0.99095 1.00847 1.84721 1.28727 1.31329 1.50144 1.22462 1.05845 1.15569 1.23842 0.91940 1.25556 1.01073 0.95746 0.93566 1.70013 1.39159 1.21220 1.25023 0.85868 0.79839 0.79105 0.81571 1.18708 1.18276 1.16111 1.20472 0.94472 0.98529 0.97784 1.22171 0.95124 0.88597 1.01456 0.88128 0.89045 0.86861 0.91626 0.91161 0.90562 0.91961 0.91137 0.92528 0.92659 0.92600 0.88955 0.86885 0.91761 0.91994 0.74909 0.86923 0.86784 0.91362 0.90340 0.90216 0.89511 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.16 -1.68 9.52 25.65 0.24 -1.44 16 3 C -0.08 -0.87 5.54 29.85 0.17 -0.71 16 4 C -0.10 -0.87 4.37 30.59 0.13 -0.74 16 5 C 0.08 0.72 2.39 44.91 0.11 0.83 16 6 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 7 C -0.19 -1.55 8.51 71.98 0.61 -0.94 16 8 N -0.53 -6.11 4.20 -875.84 -3.68 -9.79 16 9 C 0.08 0.97 4.84 85.41 0.41 1.38 16 10 C -0.13 -1.93 9.50 26.69 0.25 -1.68 16 11 C -0.13 -2.16 5.26 -15.39 -0.08 -2.25 16 12 C 0.16 3.46 5.72 85.64 0.49 3.95 16 13 N -0.71 -17.00 5.55 -466.78 -2.59 -19.59 16 14 C 0.53 18.50 7.85 87.66 0.69 19.18 16 15 O -0.56 -24.39 15.86 -3.01 -0.05 -24.44 16 16 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 17 S -0.18 -8.93 18.55 -56.49 -1.05 -9.98 16 18 C -0.53 -30.93 10.04 67.95 0.68 -30.24 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.71 5.50 84.86 0.47 3.18 16 21 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 22 Si 0.91 45.17 27.74 68.60 1.90 47.07 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 26 C -0.08 -1.04 6.04 29.76 0.18 -0.86 16 27 C 0.05 0.63 4.78 86.27 0.41 1.04 16 28 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 29 H 0.09 1.14 7.84 -2.91 -0.02 1.12 16 30 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.07 0.88 7.40 -2.39 -0.02 0.87 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.59 6.22 -2.39 -0.01 0.58 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.52 6.69 -2.39 -0.02 0.50 16 37 H 0.05 0.52 6.35 -2.39 -0.02 0.50 16 38 H 0.06 0.66 6.09 -2.39 -0.01 0.65 16 39 H 0.09 1.09 6.47 -2.38 -0.02 1.08 16 40 H 0.11 1.71 7.81 -2.91 -0.02 1.69 16 41 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 42 H 0.06 1.48 7.85 -2.39 -0.02 1.47 16 43 H 0.41 7.60 8.46 -92.71 -0.78 6.81 16 44 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 45 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 46 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 50 H 0.04 0.48 6.98 -2.39 -0.02 0.46 16 Total: -1.00 -71.09 409.04 1.11 -69.98 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.09 Total: 16.72 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.18 Total: -14.45 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -5.96 Total: -84.90 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -71.09 1.11 -69.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.163 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds