Wall clock time and date at job start Tue Mar 31 2020 22:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00066 * 2 1 4 4 C 1.53004 * 109.47081 * 124.99308 * 3 2 1 5 5 C 1.53001 * 109.46755 * 186.21006 * 4 3 2 6 6 H 1.08995 * 109.47306 * 57.52871 * 5 4 3 7 7 C 1.52999 * 109.46846 * 177.52493 * 5 4 3 8 8 N 1.46898 * 109.47455 * 297.52295 * 5 4 3 9 9 C 1.46841 * 111.00113 * 211.27198 * 8 5 4 10 10 C 1.50131 * 110.27526 * 287.53834 * 9 8 5 11 11 C 1.29824 * 123.28935 * 342.94609 * 10 9 8 12 12 C 1.50703 * 118.55818 * 180.65362 * 11 10 9 13 13 N 1.46496 * 109.47006 * 94.73394 * 12 11 10 14 14 C 1.34779 * 120.00264 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99473 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00377 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47213 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99848 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00466 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47165 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46950 * 120.00153 * 22 20 18 25 25 H 1.48499 * 109.47582 * 240.00150 * 22 20 18 26 26 C 1.50308 * 122.88833 * 0.37843 * 11 10 9 27 27 C 1.47237 * 110.99848 * 88.34135 * 8 5 4 28 28 H 1.08000 * 120.00265 * 180.02562 * 1 2 3 29 29 H 1.08007 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00231 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46780 * 4.99479 * 3 2 1 32 32 H 1.08997 * 109.47012 * 244.99272 * 3 2 1 33 33 H 1.09006 * 109.46869 * 66.21628 * 4 3 2 34 34 H 1.08992 * 109.47338 * 306.21244 * 4 3 2 35 35 H 1.09001 * 109.47462 * 66.55538 * 7 5 4 36 36 H 1.08997 * 109.47268 * 186.55540 * 7 5 4 37 37 H 1.09002 * 109.47210 * 306.55686 * 7 5 4 38 38 H 1.09001 * 109.33802 * 47.79334 * 9 8 5 39 39 H 1.09007 * 109.33200 * 167.45414 * 9 8 5 40 40 H 1.08005 * 118.35903 * 162.97015 * 10 9 8 41 41 H 1.08997 * 109.47154 * 214.73810 * 12 11 10 42 42 H 1.09000 * 109.46726 * 334.73401 * 12 11 10 43 43 H 0.97000 * 120.00096 * 359.97438 * 13 12 11 44 44 H 1.09003 * 109.47196 * 300.00521 * 16 14 13 45 45 H 1.09007 * 109.46727 * 59.99953 * 16 14 13 46 46 H 0.96996 * 120.00000 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.43300 * 103.57565 * 26 11 10 48 48 H 1.09000 * 109.42660 * 223.46824 * 26 11 10 49 49 H 1.09004 * 109.64253 * 294.89201 * 27 8 5 50 50 H 1.08998 * 109.80632 * 174.37913 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1818 5 6 3.6866 2.7144 1.2735 6 1 2.9128 3.4753 1.3749 7 6 4.6113 2.7621 2.4915 8 7 4.4675 2.9693 0.0556 9 6 5.6291 3.8201 0.3438 10 6 5.1880 5.2304 0.6092 11 6 4.0189 5.6860 0.2760 12 6 3.6930 7.1255 0.5806 13 7 3.9793 7.9504 -0.5957 14 6 3.7631 9.2802 -0.5551 15 8 3.3320 9.7938 0.4556 16 6 4.0582 10.1289 -1.7648 17 16 3.6666 11.8577 -1.3990 18 6 4.0928 12.6003 -2.9390 19 1 4.4684 11.9903 -3.7471 20 6 3.9449 13.9694 -3.1138 21 7 3.4866 14.7129 -2.1289 22 14 4.3973 14.7568 -4.7461 23 1 4.8848 13.7116 -5.6817 24 1 3.2008 15.4193 -5.3247 25 1 5.4656 15.7655 -4.5300 26 6 2.9781 4.8425 -0.4057 27 6 3.6315 3.5863 -0.9876 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4025 -0.9313 33 1 3.8060 0.5766 1.0362 34 1 2.4917 1.1257 2.1036 35 1 5.4504 2.0836 2.3375 36 1 4.9848 3.7774 2.6246 37 1 4.0576 2.4592 3.3802 38 1 6.1508 3.4342 1.2196 39 1 6.3044 3.8106 -0.5118 40 1 5.8779 5.8997 1.1016 41 1 2.6372 7.2125 0.8373 42 1 4.3000 7.4657 1.4195 43 1 4.3251 7.5398 -1.4035 44 1 5.1140 10.0414 -2.0213 45 1 3.4511 9.7889 -2.6039 46 1 3.3829 15.6695 -2.2512 47 1 2.2155 4.5529 0.3173 48 1 2.5164 5.4159 -1.2096 49 1 2.8594 2.8838 -1.3015 50 1 4.2495 3.8578 -1.8435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677533773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:44 Heat of formation + Delta-G solvation = 3.951865 kcal Electronic energy + Delta-G solvation = -26540.562250 eV Core-core repulsion = 22887.835707 eV Total energy + Delta-G solvation = -3652.726543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73968 -39.09558 -36.62730 -35.19998 -33.46914 -32.43572 -31.86492 -31.49042 -29.37054 -28.99137 -26.43076 -25.47762 -24.56512 -23.66280 -22.84831 -20.82718 -20.39081 -19.95632 -18.00679 -17.60367 -16.99782 -16.20835 -16.15662 -15.89026 -15.36682 -15.29409 -14.83594 -14.81143 -14.61764 -14.19798 -14.11629 -13.91136 -13.61572 -13.09267 -13.05770 -12.80312 -12.68045 -12.55672 -12.45852 -12.27660 -12.04026 -11.92709 -11.70928 -11.56296 -11.33672 -11.27305 -11.07671 -11.02694 -10.94664 -10.76741 -10.46822 -9.82275 -9.65258 -9.61057 -9.10580 -9.08582 -8.89931 -8.58091 -8.23963 -6.50847 -6.22545 -3.93068 1.69378 1.93626 3.08788 3.09958 3.20948 3.28556 3.35130 3.54635 3.82126 4.19591 4.32835 4.35683 4.44655 4.59306 4.66227 4.75472 4.78663 4.82611 5.00430 5.04266 5.12368 5.12692 5.13853 5.22683 5.27222 5.29860 5.33889 5.41414 5.42880 5.50254 5.53853 5.55230 5.60136 5.63356 5.74707 5.78218 5.80711 5.84139 5.88192 5.96289 6.12951 6.15834 6.29131 6.42840 6.54302 6.60442 6.70866 6.79353 7.59210 7.70633 8.34744 8.60092 9.22904 10.84962 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.480486 B =15447.901609 C =15871.030971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.100 4.100 4 C -0.100 4.100 5 C 0.068 3.932 6 H 0.060 0.940 7 C -0.157 4.157 8 N -0.520 5.520 9 C 0.070 3.930 10 C -0.166 4.166 11 C -0.135 4.135 12 C 0.157 3.843 13 N -0.734 5.734 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.122 4.122 27 C 0.038 3.962 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -31.407 5.017 31.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.040 4.040 6 H 0.078 0.922 7 C -0.214 4.214 8 N -0.242 5.242 9 C -0.057 4.057 10 C -0.187 4.187 11 C -0.136 4.136 12 C 0.034 3.966 13 N -0.388 5.388 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.160 4.160 27 C -0.090 4.090 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.287 -30.832 6.615 31.535 hybrid contribution 0.610 0.634 -2.253 2.419 sum 0.897 -30.198 4.362 30.524 Atomic orbital electron populations 1.23855 0.96059 1.01751 1.02055 1.23026 0.95964 0.98755 0.99187 1.21053 0.97893 0.94832 0.99915 1.21531 0.97838 0.96702 0.97689 1.21858 0.95652 0.97231 0.89280 0.92229 1.22115 0.99970 1.02270 0.97075 1.62775 1.08454 1.44207 1.08803 1.21335 0.93798 0.87945 1.02661 1.22921 0.96761 0.98951 1.00039 1.21002 0.96030 0.95364 1.01166 1.20238 1.01405 0.86241 0.88760 1.46036 1.69183 1.07353 1.16260 1.20345 0.76855 0.81512 0.89575 1.90704 1.43373 1.72219 1.32984 1.23526 1.04766 1.03716 0.98303 1.85401 1.85517 0.91852 1.20640 1.22911 1.50607 0.95444 0.99367 0.90870 1.25001 0.94719 0.96141 0.97765 1.70029 1.42733 1.06210 1.31309 0.86111 0.78254 0.79080 0.82013 1.19615 1.20560 1.20550 1.21061 0.97498 0.96807 1.00618 1.22640 0.97423 0.94117 0.94813 0.88749 0.88682 0.87585 0.91941 0.89608 0.91207 0.91876 0.91763 0.91974 0.92212 0.88708 0.89536 0.87086 0.91339 0.91364 0.76840 0.89251 0.89251 0.92230 0.90302 0.90115 0.88911 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 14.32 29.02 0.42 -0.82 16 2 C -0.15 -0.94 9.52 -36.02 -0.34 -1.28 16 3 C -0.10 -0.61 4.19 -27.88 -0.12 -0.72 16 4 C -0.10 -0.60 4.89 -26.73 -0.13 -0.73 16 5 C 0.07 0.44 2.03 -67.71 -0.14 0.31 16 6 H 0.06 0.45 5.17 -51.93 -0.27 0.18 16 7 C -0.16 -0.96 7.77 37.16 0.29 -0.67 16 8 N -0.52 -3.55 4.76 -228.14 -1.09 -4.63 16 9 C 0.07 0.48 5.46 -5.28 -0.03 0.45 16 10 C -0.17 -1.34 8.14 -35.97 -0.29 -1.63 16 11 C -0.13 -1.20 4.97 -100.92 -0.50 -1.70 16 12 C 0.16 1.89 5.72 -5.19 -0.03 1.86 16 13 N -0.73 -9.98 5.55 -61.47 -0.34 -10.32 16 14 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 15 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C -0.12 -0.94 5.26 -28.03 -0.15 -1.09 16 27 C 0.04 0.26 5.54 -3.60 -0.02 0.24 16 28 H 0.09 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.09 0.58 7.84 -52.48 -0.41 0.16 16 30 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.06 0.39 7.74 -51.93 -0.40 -0.01 16 32 H 0.09 0.54 5.74 -51.93 -0.30 0.24 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 7.50 -51.93 -0.39 -0.02 16 36 H 0.06 0.41 6.09 -51.93 -0.32 0.10 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.58 5.37 -51.93 -0.28 0.30 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.94 7.81 -52.48 -0.41 0.53 16 41 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 43 H 0.40 4.40 8.46 -40.82 -0.35 4.05 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 0.61 6.35 -51.93 -0.33 0.28 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.57 4.58 -51.93 -0.24 0.33 16 50 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -33.49 403.58 -10.76 -44.25 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.29 Total: 1.22 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.71 Total: -11.77 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.69 Total: -40.48 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.49 -10.76 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.201 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds