Wall clock time and date at job start Tue Mar 31 2020 22:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 120.00066 * 2 1 4 4 C 1.53004 * 109.47081 * 124.99308 * 3 2 1 5 5 C 1.53001 * 109.46755 * 186.21006 * 4 3 2 6 6 H 1.08995 * 109.47306 * 57.52871 * 5 4 3 7 7 C 1.52999 * 109.46846 * 177.52493 * 5 4 3 8 8 N 1.46898 * 109.47455 * 297.52295 * 5 4 3 9 9 C 1.46841 * 111.00113 * 211.27198 * 8 5 4 10 10 C 1.50131 * 110.27526 * 287.53834 * 9 8 5 11 11 C 1.29824 * 123.28935 * 342.94609 * 10 9 8 12 12 C 1.50703 * 118.55818 * 180.65362 * 11 10 9 13 13 N 1.46496 * 109.47006 * 94.73394 * 12 11 10 14 14 C 1.34779 * 120.00264 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99473 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00377 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.47213 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99848 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00466 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47165 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46950 * 120.00153 * 22 20 18 25 25 H 1.48499 * 109.47582 * 240.00150 * 22 20 18 26 26 C 1.50308 * 122.88833 * 0.37843 * 11 10 9 27 27 C 1.47237 * 110.99848 * 88.34135 * 8 5 4 28 28 H 1.08000 * 120.00265 * 180.02562 * 1 2 3 29 29 H 1.08007 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00231 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46780 * 4.99479 * 3 2 1 32 32 H 1.08997 * 109.47012 * 244.99272 * 3 2 1 33 33 H 1.09006 * 109.46869 * 66.21628 * 4 3 2 34 34 H 1.08992 * 109.47338 * 306.21244 * 4 3 2 35 35 H 1.09001 * 109.47462 * 66.55538 * 7 5 4 36 36 H 1.08997 * 109.47268 * 186.55540 * 7 5 4 37 37 H 1.09002 * 109.47210 * 306.55686 * 7 5 4 38 38 H 1.09001 * 109.33802 * 47.79334 * 9 8 5 39 39 H 1.09007 * 109.33200 * 167.45414 * 9 8 5 40 40 H 1.08005 * 118.35903 * 162.97015 * 10 9 8 41 41 H 1.08997 * 109.47154 * 214.73810 * 12 11 10 42 42 H 1.09000 * 109.46726 * 334.73401 * 12 11 10 43 43 H 0.97000 * 120.00096 * 359.97438 * 13 12 11 44 44 H 1.09003 * 109.47196 * 300.00521 * 16 14 13 45 45 H 1.09007 * 109.46727 * 59.99953 * 16 14 13 46 46 H 0.96996 * 120.00000 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.43300 * 103.57565 * 26 11 10 48 48 H 1.09000 * 109.42660 * 223.46824 * 26 11 10 49 49 H 1.09004 * 109.64253 * 294.89201 * 27 8 5 50 50 H 1.08998 * 109.80632 * 174.37913 * 27 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3332 1.1818 5 6 3.6866 2.7144 1.2735 6 1 2.9128 3.4753 1.3749 7 6 4.6113 2.7621 2.4915 8 7 4.4675 2.9693 0.0556 9 6 5.6291 3.8201 0.3438 10 6 5.1880 5.2304 0.6092 11 6 4.0189 5.6860 0.2760 12 6 3.6930 7.1255 0.5806 13 7 3.9793 7.9504 -0.5957 14 6 3.7631 9.2802 -0.5551 15 8 3.3320 9.7938 0.4556 16 6 4.0582 10.1289 -1.7648 17 16 3.6666 11.8577 -1.3990 18 6 4.0928 12.6003 -2.9390 19 1 4.4684 11.9903 -3.7471 20 6 3.9449 13.9694 -3.1138 21 7 3.4866 14.7129 -2.1289 22 14 4.3973 14.7568 -4.7461 23 1 4.8848 13.7116 -5.6817 24 1 3.2008 15.4193 -5.3247 25 1 5.4656 15.7655 -4.5300 26 6 2.9781 4.8425 -0.4057 27 6 3.6315 3.5863 -0.9876 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4025 -0.9313 33 1 3.8060 0.5766 1.0362 34 1 2.4917 1.1257 2.1036 35 1 5.4504 2.0836 2.3375 36 1 4.9848 3.7774 2.6246 37 1 4.0576 2.4592 3.3802 38 1 6.1508 3.4342 1.2196 39 1 6.3044 3.8106 -0.5118 40 1 5.8779 5.8997 1.1016 41 1 2.6372 7.2125 0.8373 42 1 4.3000 7.4657 1.4195 43 1 4.3251 7.5398 -1.4035 44 1 5.1140 10.0414 -2.0213 45 1 3.4511 9.7889 -2.6039 46 1 3.3829 15.6695 -2.2512 47 1 2.2155 4.5529 0.3173 48 1 2.5164 5.4159 -1.2096 49 1 2.8594 2.8838 -1.3015 50 1 4.2495 3.8578 -1.8435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677533773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:43 Heat of formation + Delta-G solvation = -17.551036 kcal Electronic energy + Delta-G solvation = -26541.494686 eV Core-core repulsion = 22887.835707 eV Total energy + Delta-G solvation = -3653.658979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39877 -40.49660 -37.35378 -36.03759 -34.60191 -34.34077 -32.55833 -32.21399 -30.76185 -29.51871 -27.78362 -27.19077 -25.25514 -24.25383 -23.43615 -21.85409 -21.39074 -20.47278 -19.89491 -18.29321 -18.03002 -17.56828 -17.07028 -16.89306 -16.75010 -16.35223 -16.01037 -15.86924 -15.50454 -15.35751 -14.94591 -14.71576 -14.56132 -14.48807 -14.32054 -13.76735 -13.52240 -13.30642 -13.18356 -13.17032 -13.03131 -12.91625 -12.78552 -12.69526 -12.58513 -12.46018 -12.07013 -11.85060 -11.83216 -11.72921 -11.47361 -11.17179 -11.12137 -10.99357 -10.29843 -10.19371 -10.08447 -9.93128 -9.15104 -8.68883 -8.36217 -6.14623 0.90797 1.29244 1.40712 1.46510 1.48145 1.56317 1.59093 2.25590 2.41678 2.98055 2.99804 3.30959 3.65015 3.70395 3.87478 3.96116 4.03865 4.11559 4.18546 4.24942 4.27077 4.31819 4.46670 4.47638 4.49066 4.55127 4.58211 4.63461 4.68311 4.74821 4.78046 4.84936 4.92332 4.95139 5.00859 5.07523 5.10453 5.24265 5.28795 5.31918 5.34854 5.40879 5.44367 5.52055 5.82512 5.87152 5.96130 6.16341 6.18739 6.24202 6.45420 7.05159 7.18604 8.73322 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.480486 B =15447.901609 C =15871.030971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.094 4.094 5 C 0.068 3.932 6 H 0.050 0.950 7 C -0.155 4.155 8 N -0.519 5.519 9 C 0.071 3.929 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.159 3.841 13 N -0.707 5.707 14 C 0.533 3.467 15 O -0.567 6.567 16 C -0.128 4.128 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.117 4.117 27 C 0.041 3.959 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.414 0.586 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -33.537 3.328 33.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.174 4.174 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.039 4.039 6 H 0.068 0.932 7 C -0.212 4.212 8 N -0.242 5.242 9 C -0.057 4.057 10 C -0.171 4.171 11 C -0.142 4.142 12 C 0.036 3.964 13 N -0.361 5.361 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.155 4.155 27 C -0.086 4.086 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.251 0.749 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.413 -33.027 4.907 33.419 hybrid contribution 0.284 1.146 -1.653 2.031 sum 1.697 -31.881 3.255 32.092 Atomic orbital electron populations 1.23971 0.96252 1.02102 1.02072 1.23128 0.96063 0.99070 0.99165 1.21008 0.97757 0.94681 0.99867 1.21469 0.97724 0.96290 0.97696 1.21853 0.95487 0.97207 0.89403 0.93216 1.22093 1.00094 1.02010 0.97020 1.62799 1.08493 1.44015 1.08870 1.21416 0.93950 0.86865 1.03450 1.23061 0.96082 0.99677 0.98299 1.20787 0.96941 0.93595 1.02893 1.20282 1.00589 0.87839 0.87656 1.45801 1.67158 1.05593 1.17503 1.20119 0.76675 0.82940 0.88354 1.90693 1.45978 1.73473 1.34436 1.23363 1.06241 0.98750 0.99599 1.85587 1.86353 0.98272 1.22253 1.23239 1.50640 0.96126 0.99374 0.89869 1.26148 0.94289 0.96740 1.02034 1.70190 1.43992 1.06661 1.33944 0.84889 0.78085 0.78133 0.76733 1.17992 1.19911 1.19895 1.21025 0.97114 0.96996 1.00350 1.22646 0.97589 0.93679 0.94721 0.88037 0.88836 0.86969 0.92334 0.89629 0.91214 0.91849 0.91185 0.92580 0.91884 0.87693 0.88720 0.87333 0.92422 0.92363 0.74889 0.87228 0.87198 0.91970 0.90481 0.90429 0.88167 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.34 14.32 67.79 0.97 -1.37 16 2 C -0.16 -1.73 9.52 25.65 0.24 -1.49 16 3 C -0.10 -1.03 4.19 29.85 0.12 -0.90 16 4 C -0.09 -0.98 4.89 30.60 0.15 -0.83 16 5 C 0.07 0.79 2.03 44.92 0.09 0.88 16 6 H 0.05 0.69 5.17 -2.39 -0.01 0.68 16 7 C -0.15 -1.63 7.77 71.98 0.56 -1.07 16 8 N -0.52 -5.96 4.76 -875.69 -4.17 -10.13 16 9 C 0.07 0.79 5.46 85.39 0.47 1.26 16 10 C -0.15 -2.15 8.14 26.68 0.22 -1.93 16 11 C -0.14 -2.32 4.97 -15.40 -0.08 -2.40 16 12 C 0.16 3.75 5.72 85.63 0.49 4.24 16 13 N -0.71 -18.36 5.55 -466.79 -2.59 -20.95 16 14 C 0.53 20.01 7.85 87.65 0.69 20.69 16 15 O -0.57 -26.85 15.86 -3.05 -0.05 -26.90 16 16 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 17 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.31 9.50 67.96 0.65 -30.66 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 22 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C -0.12 -1.63 5.26 29.75 0.16 -1.47 16 27 C 0.04 0.47 5.54 86.27 0.48 0.95 16 28 H 0.10 0.97 8.06 -2.91 -0.02 0.95 16 29 H 0.09 1.06 7.84 -2.91 -0.02 1.04 16 30 H 0.11 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.06 0.67 7.74 -2.38 -0.02 0.65 16 32 H 0.09 0.92 5.74 -2.39 -0.01 0.91 16 33 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.66 7.50 -2.39 -0.02 0.64 16 36 H 0.06 0.66 6.09 -2.39 -0.01 0.64 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.11 1.01 5.37 -2.39 -0.01 1.00 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.11 1.64 7.81 -2.91 -0.02 1.62 16 41 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 42 H 0.06 1.51 7.85 -2.39 -0.02 1.50 16 43 H 0.41 8.17 8.46 -92.71 -0.78 7.39 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 47 H 0.08 1.12 6.35 -2.39 -0.02 1.10 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.10 1.02 4.58 -2.38 -0.01 1.01 16 50 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 Total: -1.00 -74.00 403.58 0.59 -73.41 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.14 Total: 22.08 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 6.11 Total: -17.61 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -6.47 Total: -87.00 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -74.00 0.59 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677533773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.858 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds