Wall clock time and date at job start Tue Mar 31 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47003 * 185.66630 * 3 2 1 5 5 C 1.46901 * 111.00010 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47013 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47037 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46886 * 175.07408 * 7 6 5 9 9 H 1.08998 * 109.58550 * 59.76846 * 8 7 6 10 10 C 1.53193 * 109.58810 * 299.47993 * 8 7 6 11 11 H 1.09001 * 109.49447 * 65.62808 * 10 8 7 12 12 C 1.53004 * 109.50047 * 305.53307 * 10 8 7 13 13 C 1.53073 * 109.29702 * 185.72236 * 10 8 7 14 14 C 1.53039 * 109.65730 * 61.15225 * 13 10 8 15 15 C 1.53194 * 109.31576 * 298.70118 * 14 13 10 16 16 N 1.46927 * 108.77549 * 54.63378 * 15 14 13 17 17 C 1.34771 * 120.62883 * 126.36508 * 16 15 14 18 18 O 1.21279 * 119.99910 * 185.44792 * 17 16 15 19 19 C 1.50700 * 120.00329 * 5.45720 * 17 16 15 20 20 S 1.80995 * 109.47323 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99898 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99638 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99911 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00076 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99824 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47369 * 59.99723 * 25 23 21 27 27 H 1.48505 * 109.47019 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46759 * 299.99610 * 25 23 21 29 29 H 4.40887 * 5.52254 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47374 * 65.66549 * 3 2 1 31 31 H 1.09005 * 109.47459 * 305.66057 * 3 2 1 32 32 H 1.00896 * 111.00012 * 56.04277 * 4 3 2 33 33 H 1.09002 * 109.46528 * 299.99579 * 5 4 3 34 34 H 1.08995 * 109.47276 * 59.99558 * 5 4 3 35 35 H 1.08998 * 109.46984 * 300.00203 * 6 5 4 36 36 H 1.09006 * 109.46659 * 60.00007 * 6 5 4 37 37 H 1.08994 * 109.47438 * 295.07679 * 7 6 5 38 38 H 1.09001 * 109.46671 * 55.07714 * 7 6 5 39 39 H 1.09004 * 109.47164 * 59.99603 * 12 10 8 40 40 H 1.08989 * 109.47226 * 179.97438 * 12 10 8 41 41 H 1.09006 * 109.46640 * 299.99904 * 12 10 8 42 42 H 1.09006 * 109.34357 * 301.12725 * 13 10 8 43 43 H 1.08996 * 109.45233 * 181.24724 * 13 10 8 44 44 H 1.09002 * 109.49281 * 178.75096 * 14 13 10 45 45 H 1.08998 * 109.49769 * 58.65462 * 14 13 10 46 46 H 1.09001 * 109.58195 * 294.85045 * 15 14 13 47 47 H 1.08998 * 109.70128 * 174.49430 * 15 14 13 48 48 H 1.09004 * 109.46944 * 299.99995 * 19 17 16 49 49 H 1.09010 * 109.46851 * 59.99098 * 19 17 16 50 50 H 0.97005 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.3792 0.1368 5 6 4.6034 1.4189 0.1400 6 6 5.0741 2.8677 0.2831 7 6 6.6035 2.9090 0.2872 8 6 7.0742 4.3647 0.3065 9 1 6.6926 4.8603 1.1991 10 6 6.5593 5.0876 -0.9422 11 1 5.4716 5.1472 -0.9054 12 6 6.9872 4.3158 -2.1921 13 6 7.1502 6.4989 -0.9894 14 6 8.6761 6.4157 -1.0703 15 6 9.2121 5.7089 0.1786 16 7 8.5429 4.4074 0.3092 17 6 9.2626 3.2742 0.4287 18 8 8.7028 2.1983 0.4363 19 6 10.7628 3.3439 0.5529 20 16 11.4348 1.6694 0.6968 21 6 13.1530 2.0391 0.8233 22 1 13.4876 3.0657 0.7988 23 6 14.0762 1.0110 0.9544 24 7 13.6682 -0.2401 0.9848 25 14 15.8976 1.4030 1.0892 26 1 16.1341 2.2521 2.2842 27 1 16.6674 0.1398 1.2200 28 1 16.3392 2.1286 -0.1289 29 1 -1.0503 -0.0004 -0.0002 30 1 3.0095 -0.4226 -0.9363 31 1 3.0096 -0.5983 0.8350 32 1 2.7592 1.8156 0.9652 33 1 4.9809 0.8296 0.9757 34 1 4.9802 1.0056 -0.7955 35 1 4.6965 3.4566 -0.5528 36 1 4.6973 3.2814 1.2186 37 1 6.9786 2.3941 1.1715 38 1 6.9826 2.4164 -0.6083 39 1 6.5708 3.3090 -2.1577 40 1 6.6202 4.8302 -3.0801 41 1 8.0751 4.2580 -2.2287 42 1 6.8633 7.0408 -0.0881 43 1 6.7680 7.0233 -1.8652 44 1 9.0928 7.4214 -1.1262 45 1 8.9632 5.8527 -1.9584 46 1 9.0046 6.3164 1.0596 47 1 10.2874 5.5590 0.0830 48 1 11.1785 3.8279 -0.3309 49 1 11.0276 3.9189 1.4403 50 1 14.3135 -0.9586 1.0760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692107679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:46 Heat of formation + Delta-G solvation = 19.690333 kcal Electronic energy + Delta-G solvation = -27310.350846 eV Core-core repulsion = 23658.306774 eV Total energy + Delta-G solvation = -3652.044072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62895 -37.58090 -37.15907 -34.78386 -33.37767 -32.69496 -32.42725 -30.53108 -29.46796 -27.33157 -26.58570 -25.51765 -24.84445 -23.86437 -22.27671 -21.01271 -20.15119 -18.46350 -18.38197 -17.55020 -16.48406 -16.37595 -15.86159 -15.50532 -15.23942 -14.93173 -14.80932 -14.70439 -14.45623 -14.17221 -13.86288 -13.71181 -13.31748 -13.12945 -13.01286 -12.63762 -12.55753 -12.19217 -12.13342 -11.97944 -11.70983 -11.49530 -11.28378 -11.09422 -11.04847 -11.02862 -10.97245 -10.76983 -10.73116 -10.61999 -10.50161 -10.36812 -10.18041 -9.80643 -9.06119 -8.71255 -8.63193 -8.32212 -8.22574 -6.49497 -6.21905 -3.92023 2.46397 2.59442 2.96189 3.08922 3.22804 3.25659 3.28627 3.60470 3.96365 4.20386 4.30071 4.55299 4.65234 4.71871 4.90690 4.94742 5.04968 5.07395 5.13095 5.13588 5.19082 5.26536 5.34824 5.39727 5.47185 5.53739 5.55644 5.59872 5.66136 5.68286 5.74873 5.75111 5.81072 5.83338 5.88657 5.94282 5.96374 6.05847 6.09080 6.12414 6.14466 6.37328 6.50332 6.59629 6.70881 6.93931 7.08344 7.35905 7.58761 7.65625 8.34634 8.63741 9.23427 10.85374 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.002638 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.980298 B =10609.750147 C =12805.200650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.163 3.837 4 N -0.688 5.688 5 C 0.061 3.939 6 C -0.125 4.125 7 C -0.109 4.109 8 C 0.157 3.843 9 H 0.064 0.936 10 C -0.104 4.104 11 H 0.080 0.920 12 C -0.147 4.147 13 C -0.114 4.114 14 C -0.138 4.138 15 C 0.108 3.892 16 N -0.614 5.614 17 C 0.535 3.465 18 O -0.509 6.509 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.217 0.783 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 11.491 -2.808 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.182 4.182 3 C 0.035 3.965 4 N -0.319 5.319 5 C -0.068 4.068 6 C -0.163 4.163 7 C -0.147 4.147 8 C 0.053 3.947 9 H 0.082 0.918 10 C -0.123 4.123 11 H 0.099 0.901 12 C -0.204 4.204 13 C -0.151 4.151 14 C -0.176 4.176 15 C -0.015 4.015 16 N -0.350 5.350 17 C 0.323 3.677 18 O -0.384 6.384 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.234 0.766 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.543 9.822 -3.449 23.030 hybrid contribution 1.866 1.321 0.961 2.480 sum -18.676 11.143 -2.488 21.889 Atomic orbital electron populations 1.24909 0.95920 0.99660 1.01475 1.23001 0.94349 1.00787 1.00086 1.18880 0.84465 0.90794 1.02363 1.60498 1.09071 1.16292 1.46063 1.21977 0.85577 0.97650 1.01588 1.21787 0.97019 0.95709 1.01806 1.22176 0.92191 0.94385 1.05975 1.21198 0.79400 0.97394 0.96677 0.91792 1.21577 1.00120 0.94924 0.95713 0.90133 1.21886 1.02089 1.00251 0.96186 1.21545 0.95347 0.96470 1.01769 1.21967 0.96148 1.00684 0.98821 1.21697 0.98025 0.84129 0.97666 1.48090 1.05820 1.06627 1.74437 1.20244 0.88908 0.83308 0.75231 1.90719 1.70813 1.28504 1.48357 1.23615 0.94248 1.08102 1.04398 1.85329 1.03667 0.98669 1.95663 1.22821 0.91661 0.95545 1.58318 0.91077 1.24982 0.99520 0.94450 0.94602 1.70008 1.35005 0.98709 1.46578 0.86243 0.82749 0.77822 0.78805 1.19961 1.20818 1.19947 0.76612 0.88561 0.92628 0.84041 0.94576 0.90532 0.91181 0.92698 0.89418 0.89634 0.92035 0.93237 0.92214 0.92055 0.91891 0.91003 0.90932 0.91741 0.89357 0.89541 0.89522 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.18 -1.82 13.60 -37.13 -0.50 -2.33 16 3 C 0.16 1.53 6.16 -6.61 -0.04 1.49 16 4 N -0.69 -6.77 6.47 -116.88 -0.76 -7.52 16 5 C 0.06 0.64 5.69 -3.82 -0.02 0.62 16 6 C -0.12 -1.29 5.27 -26.73 -0.14 -1.43 16 7 C -0.11 -1.43 2.65 -26.73 -0.07 -1.50 16 8 C 0.16 1.85 2.71 -67.60 -0.18 1.66 16 9 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 10 C -0.10 -1.02 2.32 -90.48 -0.21 -1.23 16 11 H 0.08 0.72 6.66 -51.93 -0.35 0.37 16 12 C -0.15 -1.62 8.21 37.16 0.30 -1.31 16 13 C -0.11 -0.97 5.42 -26.67 -0.14 -1.11 16 14 C -0.14 -1.26 5.74 -26.61 -0.15 -1.41 16 15 C 0.11 1.18 6.33 -3.71 -0.02 1.15 16 16 N -0.61 -8.38 2.42 -165.22 -0.40 -8.78 16 17 C 0.53 9.66 7.63 -10.99 -0.08 9.57 16 18 O -0.51 -10.54 11.27 5.56 0.06 -10.48 16 19 C -0.15 -3.05 4.56 36.01 0.16 -2.89 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.22 1.09 7.80 -54.08 -0.42 0.67 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.34 3.08 8.71 -39.29 -0.34 2.73 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.40 6.45 -51.93 -0.34 1.07 16 38 H 0.09 1.31 5.22 -51.93 -0.27 1.04 16 39 H 0.06 0.73 6.35 -51.93 -0.33 0.40 16 40 H 0.05 0.48 8.14 -51.94 -0.42 0.06 16 41 H 0.06 0.76 5.97 -51.93 -0.31 0.45 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.00 5.96 -51.93 -0.31 0.69 16 48 H 0.09 1.62 7.47 -51.91 -0.39 1.23 16 49 H 0.09 1.63 8.12 -51.91 -0.42 1.21 16 50 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -32.59 402.40 -10.20 -42.79 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.33 Total: 3.43 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.34 Total: -12.70 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.42 Total: -41.57 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.06 Total: -10.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.59 -10.20 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692107679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.481 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds