Wall clock time and date at job start Tue Mar 31 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47003 * 185.66630 * 3 2 1 5 5 C 1.46901 * 111.00010 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47013 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47037 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46886 * 175.07408 * 7 6 5 9 9 H 1.08998 * 109.58550 * 59.76846 * 8 7 6 10 10 C 1.53193 * 109.58810 * 299.47993 * 8 7 6 11 11 H 1.09001 * 109.49447 * 65.62808 * 10 8 7 12 12 C 1.53004 * 109.50047 * 305.53307 * 10 8 7 13 13 C 1.53073 * 109.29702 * 185.72236 * 10 8 7 14 14 C 1.53039 * 109.65730 * 61.15225 * 13 10 8 15 15 C 1.53194 * 109.31576 * 298.70118 * 14 13 10 16 16 N 1.46927 * 108.77549 * 54.63378 * 15 14 13 17 17 C 1.34771 * 120.62883 * 126.36508 * 16 15 14 18 18 O 1.21279 * 119.99910 * 185.44792 * 17 16 15 19 19 C 1.50700 * 120.00329 * 5.45720 * 17 16 15 20 20 S 1.80995 * 109.47323 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99898 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99638 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99911 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00076 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99824 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47369 * 59.99723 * 25 23 21 27 27 H 1.48505 * 109.47019 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46759 * 299.99610 * 25 23 21 29 29 H 4.40887 * 5.52254 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47374 * 65.66549 * 3 2 1 31 31 H 1.09005 * 109.47459 * 305.66057 * 3 2 1 32 32 H 1.00896 * 111.00012 * 56.04277 * 4 3 2 33 33 H 1.09002 * 109.46528 * 299.99579 * 5 4 3 34 34 H 1.08995 * 109.47276 * 59.99558 * 5 4 3 35 35 H 1.08998 * 109.46984 * 300.00203 * 6 5 4 36 36 H 1.09006 * 109.46659 * 60.00007 * 6 5 4 37 37 H 1.08994 * 109.47438 * 295.07679 * 7 6 5 38 38 H 1.09001 * 109.46671 * 55.07714 * 7 6 5 39 39 H 1.09004 * 109.47164 * 59.99603 * 12 10 8 40 40 H 1.08989 * 109.47226 * 179.97438 * 12 10 8 41 41 H 1.09006 * 109.46640 * 299.99904 * 12 10 8 42 42 H 1.09006 * 109.34357 * 301.12725 * 13 10 8 43 43 H 1.08996 * 109.45233 * 181.24724 * 13 10 8 44 44 H 1.09002 * 109.49281 * 178.75096 * 14 13 10 45 45 H 1.08998 * 109.49769 * 58.65462 * 14 13 10 46 46 H 1.09001 * 109.58195 * 294.85045 * 15 14 13 47 47 H 1.08998 * 109.70128 * 174.49430 * 15 14 13 48 48 H 1.09004 * 109.46944 * 299.99995 * 19 17 16 49 49 H 1.09010 * 109.46851 * 59.99098 * 19 17 16 50 50 H 0.97005 * 119.99780 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 1.3792 0.1368 5 6 4.6034 1.4189 0.1400 6 6 5.0741 2.8677 0.2831 7 6 6.6035 2.9090 0.2872 8 6 7.0742 4.3647 0.3065 9 1 6.6926 4.8603 1.1991 10 6 6.5593 5.0876 -0.9422 11 1 5.4716 5.1472 -0.9054 12 6 6.9872 4.3158 -2.1921 13 6 7.1502 6.4989 -0.9894 14 6 8.6761 6.4157 -1.0703 15 6 9.2121 5.7089 0.1786 16 7 8.5429 4.4074 0.3092 17 6 9.2626 3.2742 0.4287 18 8 8.7028 2.1983 0.4363 19 6 10.7628 3.3439 0.5529 20 16 11.4348 1.6694 0.6968 21 6 13.1530 2.0391 0.8233 22 1 13.4876 3.0657 0.7988 23 6 14.0762 1.0110 0.9544 24 7 13.6682 -0.2401 0.9848 25 14 15.8976 1.4030 1.0892 26 1 16.1341 2.2521 2.2842 27 1 16.6674 0.1398 1.2200 28 1 16.3392 2.1286 -0.1289 29 1 -1.0503 -0.0004 -0.0002 30 1 3.0095 -0.4226 -0.9363 31 1 3.0096 -0.5983 0.8350 32 1 2.7592 1.8156 0.9652 33 1 4.9809 0.8296 0.9757 34 1 4.9802 1.0056 -0.7955 35 1 4.6965 3.4566 -0.5528 36 1 4.6973 3.2814 1.2186 37 1 6.9786 2.3941 1.1715 38 1 6.9826 2.4164 -0.6083 39 1 6.5708 3.3090 -2.1577 40 1 6.6202 4.8302 -3.0801 41 1 8.0751 4.2580 -2.2287 42 1 6.8633 7.0408 -0.0881 43 1 6.7680 7.0233 -1.8652 44 1 9.0928 7.4214 -1.1262 45 1 8.9632 5.8527 -1.9584 46 1 9.0046 6.3164 1.0596 47 1 10.2874 5.5590 0.0830 48 1 11.1785 3.8279 -0.3309 49 1 11.0276 3.9189 1.4403 50 1 14.3135 -0.9586 1.0760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692107679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:45 Heat of formation + Delta-G solvation = 0.179655 kcal Electronic energy + Delta-G solvation = -27311.196893 eV Core-core repulsion = 23658.306774 eV Total energy + Delta-G solvation = -3652.890119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75826 -38.76867 -38.00413 -35.71280 -34.59455 -34.36850 -33.50962 -31.36844 -30.91224 -28.35151 -27.63464 -27.42137 -25.80973 -24.77501 -23.18987 -21.94032 -21.32750 -19.85465 -19.14598 -19.08455 -17.72436 -17.23958 -17.00361 -16.87965 -16.72324 -16.14493 -15.94929 -15.77589 -15.42565 -15.34970 -15.06863 -14.63058 -14.46731 -14.39878 -14.15783 -13.92784 -13.60063 -13.42660 -13.21330 -13.05514 -12.97208 -12.87758 -12.72390 -12.58090 -12.43562 -12.13990 -11.94438 -11.80078 -11.72579 -11.54768 -11.46789 -11.26804 -11.19117 -11.13332 -11.06540 -10.25659 -9.98291 -9.51952 -9.44066 -8.65631 -8.34953 -6.12331 1.26582 1.42565 1.45805 1.55541 1.66951 1.74857 1.88937 2.15955 2.28025 2.98831 3.18780 3.29034 3.57402 3.66061 3.82360 3.89535 3.98767 4.09781 4.14276 4.16883 4.26140 4.29200 4.41796 4.45636 4.46048 4.51824 4.58680 4.60795 4.62691 4.69890 4.82613 4.89604 4.90330 4.96899 5.02188 5.05551 5.08491 5.14471 5.26128 5.30303 5.32355 5.40550 5.46589 5.53804 5.58318 5.84132 5.90693 6.18810 6.32835 6.42142 6.67383 7.06160 7.27803 8.73814 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.002638 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.980298 B =10609.750147 C =12805.200650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.224 4.224 3 C 0.162 3.838 4 N -0.686 5.686 5 C 0.065 3.935 6 C -0.111 4.111 7 C -0.099 4.099 8 C 0.153 3.847 9 H 0.083 0.917 10 C -0.097 4.097 11 H 0.099 0.901 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.602 5.602 17 C 0.531 3.469 18 O -0.546 6.546 19 C -0.127 4.127 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.249 0.751 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.348 0.652 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 14.867 -2.871 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.225 4.225 3 C 0.034 3.966 4 N -0.318 5.318 5 C -0.064 4.064 6 C -0.149 4.149 7 C -0.137 4.137 8 C 0.050 3.950 9 H 0.101 0.899 10 C -0.116 4.116 11 H 0.117 0.883 12 C -0.202 4.202 13 C -0.147 4.147 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.336 5.336 17 C 0.318 3.682 18 O -0.424 6.424 19 C -0.278 4.278 20 S 0.082 5.918 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.265 0.735 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.166 0.834 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.580 13.253 -3.517 25.568 hybrid contribution 2.040 0.317 0.960 2.277 sum -19.540 13.570 -2.556 23.927 Atomic orbital electron populations 1.25750 0.96774 0.97887 0.99744 1.23289 0.94959 1.02473 1.01740 1.18858 0.84824 0.90530 1.02383 1.60477 1.08170 1.16771 1.46360 1.21867 0.86290 0.97795 1.00429 1.21640 0.94746 0.95578 1.02928 1.21896 0.94000 0.94939 1.02893 1.21418 0.78000 0.96782 0.98781 0.89928 1.21565 1.01164 0.95408 0.93458 0.88265 1.21850 1.00540 0.99941 0.97824 1.21552 0.94462 0.95346 1.03355 1.21952 0.96920 1.01384 0.96921 1.22010 0.97625 0.82882 0.99835 1.48083 1.06703 1.06365 1.72442 1.19982 0.88204 0.84167 0.75811 1.90737 1.71068 1.30197 1.50359 1.23440 0.95745 1.03103 1.05516 1.85478 1.04875 1.05510 1.95986 1.23162 0.91945 0.96134 1.58247 0.90182 1.26112 1.05056 0.94102 0.93849 1.70177 1.36855 0.99955 1.47711 0.85033 0.75802 0.77889 0.79463 1.18672 1.20358 1.18666 0.73490 0.88790 0.92439 0.83379 0.95839 0.91793 0.90093 0.91212 0.92910 0.92473 0.93647 0.91604 0.94416 0.90412 0.90310 0.88546 0.92432 0.89390 0.90038 0.88268 0.88200 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 19.25 74.32 1.43 -1.43 16 2 C -0.22 -4.37 13.60 31.12 0.42 -3.95 16 3 C 0.16 3.12 6.16 84.49 0.52 3.64 16 4 N -0.69 -13.45 6.47 -523.71 -3.39 -16.84 16 5 C 0.07 1.43 5.69 86.30 0.49 1.92 16 6 C -0.11 -2.23 5.27 30.59 0.16 -2.07 16 7 C -0.10 -2.67 2.65 30.59 0.08 -2.59 16 8 C 0.15 3.40 2.71 44.97 0.12 3.52 16 9 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 10 C -0.10 -1.65 2.32 -10.70 -0.02 -1.68 16 11 H 0.10 1.40 6.66 -2.39 -0.02 1.39 16 12 C -0.14 -3.06 8.21 71.98 0.59 -2.47 16 13 C -0.11 -1.43 5.42 30.63 0.17 -1.27 16 14 C -0.13 -2.03 5.74 30.67 0.18 -1.86 16 15 C 0.10 1.91 6.33 86.36 0.55 2.46 16 16 N -0.60 -15.98 2.42 -795.03 -1.93 -17.91 16 17 C 0.53 19.73 7.63 87.66 0.67 20.40 16 18 O -0.55 -24.06 11.27 -3.03 -0.03 -24.10 16 19 C -0.13 -5.15 4.56 71.24 0.33 -4.83 16 20 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 21 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 25 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 29 H 0.25 1.78 7.80 -4.40 -0.03 1.75 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.35 6.04 8.71 -89.70 -0.78 5.26 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.48 6.33 -2.39 -0.02 1.47 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.80 6.45 -2.39 -0.02 1.78 16 38 H 0.06 1.87 5.22 -2.39 -0.01 1.86 16 39 H 0.04 1.10 6.35 -2.39 -0.02 1.08 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.96 5.97 -2.38 -0.01 0.94 16 42 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.07 6.34 -2.39 -0.02 1.06 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.70 5.96 -2.39 -0.01 1.69 16 48 H 0.10 3.74 7.47 -2.39 -0.02 3.72 16 49 H 0.10 3.75 8.12 -2.39 -0.02 3.74 16 50 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -74.76 402.40 2.73 -72.03 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.14 Total: 25.98 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 6.79 Total: -19.78 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -5.03 Total: -90.64 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.03 Total: -24.10 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -74.76 2.73 -72.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692107679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.207 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds