Wall clock time and date at job start Tue Mar 31 2020 22:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.53002 * 109.47128 * 239.99906 * 2 1 3 5 5 C 1.52994 * 109.46948 * 65.00318 * 4 2 1 6 6 C 1.50702 * 109.47214 * 179.97438 * 5 4 2 7 7 C 1.38270 * 119.98639 * 269.72733 * 6 5 4 8 8 C 1.38229 * 120.04904 * 179.72320 * 7 6 5 9 9 C 1.38221 * 120.02349 * 0.54353 * 8 7 6 10 10 C 1.38436 * 119.97666 * 359.73122 * 9 8 7 11 11 F 1.35100 * 120.02487 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98847 * 89.99601 * 6 5 4 13 13 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 14 14 O 1.21284 * 120.00109 * 120.00318 * 13 2 1 15 15 N 1.34777 * 120.00137 * 300.00533 * 13 2 1 16 16 C 1.46506 * 119.99873 * 180.02562 * 15 13 2 17 17 C 1.53002 * 109.47035 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47059 * 59.99372 * 17 16 15 19 19 O 1.42898 * 109.46791 * 299.99784 * 17 16 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 17 16 15 21 21 N 1.46501 * 109.47088 * 184.99743 * 20 17 16 22 22 C 1.36930 * 120.00341 * 179.97438 * 21 20 17 23 23 H 1.08006 * 120.00050 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00141 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99882 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00099 * 0.02562 * 24 22 21 27 27 H 1.48508 * 109.46993 * 89.99852 * 26 24 22 28 28 H 1.48507 * 109.47290 * 209.99595 * 26 24 22 29 29 H 1.48495 * 109.47113 * 330.00003 * 26 24 22 30 30 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 31 31 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 32 32 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46816 * 184.99745 * 4 2 1 34 34 H 1.08996 * 109.47073 * 304.99996 * 4 2 1 35 35 H 1.09006 * 109.47378 * 299.99351 * 5 4 2 36 36 H 1.08996 * 109.47496 * 59.99937 * 5 4 2 37 37 H 1.07995 * 119.97576 * 359.97438 * 7 6 5 38 38 H 1.07995 * 119.98391 * 180.27414 * 8 7 6 39 39 H 1.08004 * 120.00996 * 179.74823 * 9 8 7 40 40 H 1.08006 * 120.01279 * 359.97438 * 12 6 5 41 41 H 0.96999 * 120.00047 * 359.97438 * 15 13 2 42 42 H 1.09004 * 109.47073 * 299.99562 * 16 15 13 43 43 H 1.09000 * 109.47212 * 59.99645 * 16 15 13 44 44 H 0.96698 * 114.00171 * 300.00199 * 19 17 16 45 45 H 1.09000 * 109.47315 * 304.99631 * 20 17 16 46 46 H 1.09003 * 109.47204 * 65.00512 * 20 17 16 47 47 H 0.97005 * 119.99489 * 0.02562 * 21 20 17 48 48 H 0.97002 * 119.99704 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0689 -2.4953 6 6 2.1382 -0.6411 -3.7257 7 6 3.3896 -0.3431 -4.2327 8 6 3.8545 -0.9977 -5.3579 9 6 3.0640 -1.9430 -5.9841 10 6 1.8086 -2.2381 -5.4808 11 9 1.0354 -3.1622 -6.0918 12 6 1.3463 -1.5857 -4.3501 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7066 -0.2499 2.4546 16 6 2.1954 -0.9402 3.6508 17 6 1.6858 -0.2187 4.9000 18 1 0.5957 -0.2187 4.9003 19 8 2.1620 1.1286 4.8995 20 6 2.1957 -0.9400 6.1492 21 7 1.6119 -0.3221 7.3424 22 6 1.9249 -0.8034 8.5855 23 1 2.6026 -1.6383 8.6865 24 6 1.3722 -0.2176 9.7160 25 7 1.6735 -0.6799 10.9110 26 14 0.2007 1.2269 9.5416 27 1 -1.1917 0.7238 9.4253 28 1 0.3127 2.1022 10.7361 29 1 0.5497 2.0031 8.3247 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 0.5490 0.1471 -2.5390 36 1 2.0699 1.0674 -2.4494 37 1 4.0060 0.3987 -3.7468 38 1 4.8339 -0.7673 -5.7503 39 1 3.4258 -2.4514 -6.8656 40 1 0.3672 -1.8155 -3.9563 41 1 1.1492 0.5389 2.5435 42 1 1.8325 -1.9681 3.6509 43 1 3.2854 -0.9398 3.6506 44 1 3.1260 1.2050 4.8991 45 1 1.9070 -1.9902 6.1057 46 1 3.2821 -0.8633 6.1951 47 1 1.0030 0.4276 7.2517 48 1 1.2869 -0.2708 11.7010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699073240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:30 Heat of formation + Delta-G solvation = -116.686505 kcal Electronic energy + Delta-G solvation = -27760.437134 eV Core-core repulsion = 23536.266142 eV Total energy + Delta-G solvation = -4224.170992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.27995 -40.27195 -39.56718 -37.90185 -35.95906 -34.55831 -34.17156 -32.73948 -31.50088 -30.99647 -29.63462 -28.59069 -26.10589 -25.35735 -23.27819 -22.98724 -22.08398 -21.56391 -21.22914 -19.94160 -17.96442 -17.74976 -17.22090 -16.85363 -16.59907 -16.48680 -16.13407 -15.97760 -15.58288 -15.47947 -14.67706 -14.55612 -14.31301 -14.15746 -14.00046 -13.78314 -13.63149 -13.29405 -13.22619 -13.00570 -12.88490 -12.58868 -12.42802 -12.27562 -12.06277 -11.95769 -11.84694 -11.61543 -11.33495 -11.19357 -11.02832 -10.89487 -10.84144 -10.20419 -10.05601 -9.73201 -9.57323 -9.39504 -9.18850 -9.09153 -8.95324 -7.28591 -5.79975 -3.16425 0.70694 0.75138 2.50691 2.96828 3.15222 3.37161 3.42581 3.44704 3.78493 4.13368 4.26722 4.36784 4.49957 4.52332 4.55695 4.57744 4.62837 4.67821 4.74328 4.83456 4.93737 5.02850 5.08570 5.09451 5.18739 5.39186 5.42518 5.44696 5.46251 5.49004 5.57817 5.61651 5.66798 5.69303 5.74369 5.79595 5.83614 5.88165 5.95957 6.08036 6.29235 6.39159 6.45067 6.51613 7.37055 7.73090 7.95438 8.09630 8.38384 9.17651 9.89575 10.09082 11.38014 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.001521 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.104168 B =18406.753419 C =18501.407157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.094 4.094 5 C -0.085 4.085 6 C -0.049 4.049 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.161 4.161 10 C 0.099 3.901 11 F -0.141 7.141 12 C -0.152 4.152 13 C 0.514 3.486 14 O -0.542 6.542 15 N -0.721 5.721 16 C 0.089 3.911 17 C 0.085 3.915 18 H 0.104 0.896 19 O -0.557 6.557 20 C 0.131 3.869 21 N -0.749 5.749 22 C -0.249 4.249 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.404 0.596 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.376 0.624 45 H 0.038 0.962 46 H 0.032 0.968 47 H 0.365 0.635 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 3.508 -35.993 36.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 H 0.117 0.883 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.049 4.049 7 C -0.146 4.146 8 C -0.106 4.106 9 C -0.180 4.180 10 C 0.080 3.920 11 F -0.120 7.120 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.419 6.419 15 N -0.373 5.373 16 C -0.035 4.035 17 C 0.025 3.975 18 H 0.122 0.878 19 O -0.362 6.362 20 C 0.003 3.997 21 N -0.395 5.395 22 C -0.379 4.379 23 H 0.107 0.893 24 C -0.190 4.190 25 N -0.580 5.580 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.239 0.761 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.223 0.777 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.199 0.801 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.228 2.739 -35.885 35.990 hybrid contribution -0.606 0.946 0.035 1.124 sum -0.378 3.685 -35.850 36.041 Atomic orbital electron populations 1.21860 0.92826 1.03007 1.02875 1.21323 0.97700 1.00971 0.93167 0.88319 1.21377 1.02248 0.99000 0.90592 1.20755 1.01721 0.98683 0.91032 1.19740 0.93841 0.95367 0.95936 1.21170 0.95739 1.00889 0.96761 1.21029 0.99516 0.94918 0.95152 1.21162 0.93578 1.00989 1.02269 1.17724 0.90166 0.90380 0.93706 1.91508 1.74533 1.63651 1.82259 1.21061 1.01732 0.98468 0.95790 1.20631 0.80114 0.84626 0.84657 1.90716 1.37967 1.26366 1.86877 1.45940 1.53788 1.32213 1.05403 1.22067 1.00022 0.97185 0.84253 1.22450 0.99863 0.82463 0.92698 0.87809 1.86543 1.27049 1.25735 1.96881 1.21179 0.96791 0.96004 0.85755 1.42566 1.56071 1.38945 1.01954 1.19046 1.23791 1.13294 0.81762 0.89257 1.24672 1.00105 0.99164 0.95030 1.69709 1.47764 1.43590 0.96958 0.86538 0.81519 0.83399 0.77116 1.21109 1.21711 1.19881 0.91900 0.91145 0.91903 0.90670 0.90920 0.90227 0.90305 0.85227 0.84960 0.84868 0.84735 0.76064 0.90322 0.90955 0.77677 0.94452 0.95054 0.80128 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.51 16 2 C -0.11 -0.78 2.72 -91.77 -0.25 -1.03 16 3 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.09 -0.69 4.01 -26.73 -0.11 -0.80 16 5 C -0.08 -0.44 5.10 -27.88 -0.14 -0.59 16 6 C -0.05 -0.32 5.13 -104.63 -0.54 -0.86 16 7 C -0.13 -0.78 9.70 -39.57 -0.38 -1.16 16 8 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 9 C -0.16 -1.11 10.03 -39.51 -0.40 -1.50 16 10 C 0.10 0.82 7.30 -39.42 -0.29 0.53 16 11 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 12 C -0.15 -1.13 9.68 -39.51 -0.38 -1.52 16 13 C 0.51 5.61 7.15 -10.99 -0.08 5.53 16 14 O -0.54 -8.15 15.92 5.55 0.09 -8.06 16 15 N -0.72 -7.30 5.34 -60.29 -0.32 -7.62 16 16 C 0.09 1.06 5.34 -4.04 -0.02 1.04 16 17 C 0.09 1.16 3.08 -26.73 -0.08 1.08 16 18 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 19 O -0.56 -7.67 13.03 -35.23 -0.46 -8.13 16 20 C 0.13 2.36 5.90 -4.04 -0.02 2.34 16 21 N -0.75 -17.49 5.35 -59.91 -0.32 -17.82 16 22 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 23 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 26 Si 0.88 22.09 27.73 -169.99 -4.71 17.38 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.27 -6.49 6.52 56.52 0.37 -6.13 16 30 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 31 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.34 6.51 -51.93 -0.34 0.01 16 36 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.40 3.42 7.77 -40.82 -0.32 3.10 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.38 4.23 9.05 45.56 0.41 4.64 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.37 8.48 5.53 -40.82 -0.23 8.25 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -35.21 402.12 -8.57 -43.78 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.70 Total: 9.67 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.02 Total: -5.48 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.13 Total: -53.94 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.37 Total: -16.19 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.21 -8.57 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699073240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.910 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds