Wall clock time and date at job start Tue Mar 31 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46698 * 2 1 4 4 C 1.53002 * 109.47128 * 239.99906 * 2 1 3 5 5 C 1.52994 * 109.46948 * 65.00318 * 4 2 1 6 6 C 1.50702 * 109.47214 * 179.97438 * 5 4 2 7 7 C 1.38270 * 119.98639 * 269.72733 * 6 5 4 8 8 C 1.38229 * 120.04904 * 179.72320 * 7 6 5 9 9 C 1.38221 * 120.02349 * 0.54353 * 8 7 6 10 10 C 1.38436 * 119.97666 * 359.73122 * 9 8 7 11 11 F 1.35100 * 120.02487 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98847 * 89.99601 * 6 5 4 13 13 C 1.50696 * 109.46999 * 119.99757 * 2 1 3 14 14 O 1.21284 * 120.00109 * 120.00318 * 13 2 1 15 15 N 1.34777 * 120.00137 * 300.00533 * 13 2 1 16 16 C 1.46506 * 119.99873 * 180.02562 * 15 13 2 17 17 C 1.53002 * 109.47035 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47059 * 59.99372 * 17 16 15 19 19 O 1.42898 * 109.46791 * 299.99784 * 17 16 15 20 20 C 1.52996 * 109.46969 * 179.97438 * 17 16 15 21 21 N 1.46501 * 109.47088 * 184.99743 * 20 17 16 22 22 C 1.36930 * 120.00341 * 179.97438 * 21 20 17 23 23 H 1.08006 * 120.00050 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00141 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99882 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00099 * 0.02562 * 24 22 21 27 27 H 1.48508 * 109.46993 * 89.99852 * 26 24 22 28 28 H 1.48507 * 109.47290 * 209.99595 * 26 24 22 29 29 H 1.48495 * 109.47113 * 330.00003 * 26 24 22 30 30 H 1.08992 * 109.47513 * 299.99609 * 1 2 3 31 31 H 1.09002 * 109.46838 * 60.00504 * 1 2 3 32 32 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46816 * 184.99745 * 4 2 1 34 34 H 1.08996 * 109.47073 * 304.99996 * 4 2 1 35 35 H 1.09006 * 109.47378 * 299.99351 * 5 4 2 36 36 H 1.08996 * 109.47496 * 59.99937 * 5 4 2 37 37 H 1.07995 * 119.97576 * 359.97438 * 7 6 5 38 38 H 1.07995 * 119.98391 * 180.27414 * 8 7 6 39 39 H 1.08004 * 120.00996 * 179.74823 * 9 8 7 40 40 H 1.08006 * 120.01279 * 359.97438 * 12 6 5 41 41 H 0.96999 * 120.00047 * 359.97438 * 15 13 2 42 42 H 1.09004 * 109.47073 * 299.99562 * 16 15 13 43 43 H 1.09000 * 109.47212 * 59.99645 * 16 15 13 44 44 H 0.96698 * 114.00171 * 300.00199 * 19 17 16 45 45 H 1.09000 * 109.47315 * 304.99631 * 20 17 16 46 46 H 1.09003 * 109.47204 * 65.00512 * 20 17 16 47 47 H 0.97005 * 119.99489 * 0.02562 * 21 20 17 48 48 H 0.97002 * 119.99704 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0689 -2.4953 6 6 2.1382 -0.6411 -3.7257 7 6 3.3896 -0.3431 -4.2327 8 6 3.8545 -0.9977 -5.3579 9 6 3.0640 -1.9430 -5.9841 10 6 1.8086 -2.2381 -5.4808 11 9 1.0354 -3.1622 -6.0918 12 6 1.3463 -1.5857 -4.3501 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6964 1.1193 15 7 1.7066 -0.2499 2.4546 16 6 2.1954 -0.9402 3.6508 17 6 1.6858 -0.2187 4.9000 18 1 0.5957 -0.2187 4.9003 19 8 2.1620 1.1286 4.8995 20 6 2.1957 -0.9400 6.1492 21 7 1.6119 -0.3221 7.3424 22 6 1.9249 -0.8034 8.5855 23 1 2.6026 -1.6383 8.6865 24 6 1.3722 -0.2176 9.7160 25 7 1.6735 -0.6799 10.9110 26 14 0.2007 1.2269 9.5416 27 1 -1.1917 0.7238 9.4253 28 1 0.3127 2.1022 10.7361 29 1 0.5497 2.0031 8.3247 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2951 35 1 0.5490 0.1471 -2.5390 36 1 2.0699 1.0674 -2.4494 37 1 4.0060 0.3987 -3.7468 38 1 4.8339 -0.7673 -5.7503 39 1 3.4258 -2.4514 -6.8656 40 1 0.3672 -1.8155 -3.9563 41 1 1.1492 0.5389 2.5435 42 1 1.8325 -1.9681 3.6509 43 1 3.2854 -0.9398 3.6506 44 1 3.1260 1.2050 4.8991 45 1 1.9070 -1.9902 6.1057 46 1 3.2821 -0.8633 6.1951 47 1 1.0030 0.4276 7.2517 48 1 1.2869 -0.2708 11.7010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699073240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:29 Heat of formation + Delta-G solvation = -142.099849 kcal Electronic energy + Delta-G solvation = -27761.539139 eV Core-core repulsion = 23536.266142 eV Total energy + Delta-G solvation = -4225.272997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.91514 -41.08788 -40.10420 -39.05627 -36.58421 -36.19778 -35.29946 -33.52127 -33.22734 -31.49348 -30.89821 -29.20928 -27.31309 -26.13559 -24.35362 -23.68661 -23.19133 -22.84419 -21.86818 -20.73498 -19.77797 -18.58929 -17.99388 -17.55632 -17.38369 -17.19030 -17.08213 -16.61881 -16.54556 -16.46133 -16.26685 -15.44878 -15.37058 -15.09737 -14.92571 -14.67567 -14.62470 -14.35647 -14.14349 -13.95195 -13.72881 -13.55845 -13.40783 -13.26552 -13.14247 -12.80684 -12.71170 -12.48300 -12.37517 -12.23627 -12.12949 -11.88687 -11.82905 -11.69497 -11.52782 -11.15246 -11.01336 -10.68971 -10.10507 -9.89337 -9.60946 -9.32716 -8.04148 -5.38295 0.19469 0.26497 1.39989 1.42682 1.51129 1.66967 2.14675 2.48556 2.63709 3.25667 3.26843 3.37508 3.52143 3.64165 3.73740 3.83564 3.97484 4.01592 4.03184 4.09030 4.18923 4.21561 4.31003 4.37687 4.46063 4.54945 4.58952 4.60322 4.74482 4.77273 4.91548 4.96143 4.99574 5.02752 5.08535 5.14257 5.17191 5.18681 5.33476 5.38580 5.42817 5.45920 5.61441 5.72697 5.97366 6.19039 6.57018 6.75606 7.06754 7.27679 7.81662 8.01357 9.17071 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031735 B = 0.001521 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.104168 B =18406.753419 C =18501.407157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.126 0.874 4 C -0.089 4.089 5 C -0.076 4.076 6 C -0.057 4.057 7 C -0.131 4.131 8 C -0.090 4.090 9 C -0.169 4.169 10 C 0.072 3.928 11 F -0.154 7.154 12 C -0.163 4.163 13 C 0.509 3.491 14 O -0.589 6.589 15 N -0.711 5.711 16 C 0.099 3.901 17 C 0.107 3.893 18 H 0.110 0.890 19 O -0.562 6.562 20 C 0.123 3.877 21 N -0.751 5.751 22 C -0.241 4.241 23 H 0.055 0.945 24 C -0.063 4.063 25 N -0.983 5.983 26 Si 0.959 3.041 27 H -0.277 1.277 28 H -0.296 1.296 29 H -0.250 1.250 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.416 0.584 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.388 0.612 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.369 0.631 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 6.245 -38.011 38.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.144 0.856 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.057 4.057 7 C -0.149 4.149 8 C -0.108 4.108 9 C -0.188 4.188 10 C 0.053 3.947 11 F -0.133 7.133 12 C -0.182 4.182 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.364 5.364 16 C -0.026 4.026 17 C 0.047 3.953 18 H 0.128 0.872 19 O -0.369 6.369 20 C -0.004 4.004 21 N -0.398 5.398 22 C -0.372 4.372 23 H 0.073 0.927 24 C -0.255 4.255 25 N -0.633 5.633 26 Si 0.785 3.215 27 H -0.203 1.203 28 H -0.223 1.223 29 H -0.174 1.174 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.253 0.747 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.237 0.763 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.203 0.797 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.509 5.498 -37.960 38.360 hybrid contribution -0.257 0.000 0.637 0.687 sum -0.766 5.498 -37.324 37.735 Atomic orbital electron populations 1.21884 0.91433 1.02632 1.04433 1.21349 0.98637 1.01547 0.90659 0.85601 1.21283 1.00979 0.98471 0.91961 1.20734 1.02638 0.98913 0.89040 1.19965 0.94089 0.95258 0.96414 1.21511 0.95693 1.01015 0.96714 1.21364 1.00335 0.94195 0.94933 1.21411 0.93221 1.01331 1.02791 1.18054 0.90976 0.91084 0.94630 1.91466 1.74977 1.64261 1.82587 1.21236 1.02308 0.98828 0.95811 1.21374 0.79148 0.84061 0.85667 1.90701 1.40173 1.28569 1.87510 1.45833 1.53535 1.32289 1.04695 1.21800 0.99801 0.96699 0.84308 1.22121 0.99953 0.82140 0.91041 0.87202 1.86520 1.28324 1.25276 1.96738 1.21409 0.96762 0.96264 0.85959 1.42529 1.56363 1.39142 1.01731 1.19043 1.22186 1.11915 0.84006 0.92680 1.25541 1.02637 1.02720 0.94564 1.69896 1.49814 1.45687 0.97945 0.85355 0.79009 0.79519 0.77582 1.20341 1.22282 1.17414 0.91073 0.88888 0.93284 0.92388 0.93090 0.88936 0.88267 0.83285 0.82544 0.83736 0.84316 0.74677 0.91111 0.91228 0.76313 0.94582 0.94873 0.79702 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.84 71.98 0.64 -0.59 16 2 C -0.10 -1.16 2.72 -11.54 -0.03 -1.20 16 3 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.09 -1.18 4.01 30.59 0.12 -1.06 16 5 C -0.08 -0.61 5.10 29.85 0.15 -0.45 16 6 C -0.06 -0.68 5.13 -19.87 -0.10 -0.78 16 7 C -0.13 -1.36 9.70 22.28 0.22 -1.14 16 8 C -0.09 -0.92 10.04 22.26 0.22 -0.69 16 9 C -0.17 -2.23 10.03 22.31 0.22 -2.00 16 10 C 0.07 1.20 7.30 22.38 0.16 1.36 16 11 F -0.15 -3.01 17.27 44.97 0.78 -2.24 16 12 C -0.16 -2.39 9.68 22.31 0.22 -2.18 16 13 C 0.51 10.33 7.15 87.66 0.63 10.95 16 14 O -0.59 -17.58 15.92 -3.04 -0.05 -17.63 16 15 N -0.71 -12.75 5.34 -463.04 -2.47 -15.22 16 16 C 0.10 2.19 5.34 86.38 0.46 2.65 16 17 C 0.11 2.68 3.08 30.59 0.09 2.77 16 18 H 0.11 2.68 8.14 -2.39 -0.02 2.67 16 19 O -0.56 -13.70 13.03 -148.98 -1.94 -15.64 16 20 C 0.12 4.29 5.90 86.38 0.51 4.80 16 21 N -0.75 -34.14 5.35 -343.45 -1.84 -35.97 16 22 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 23 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 24 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 25 N -0.98 -63.04 13.97 21.65 0.30 -62.74 16 26 Si 0.96 45.20 27.73 68.60 1.90 47.10 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 30 H 0.07 0.50 7.56 -2.39 -0.02 0.48 16 31 H 0.09 0.39 6.56 -2.39 -0.02 0.38 16 32 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.97 7.96 -2.39 -0.02 0.95 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.51 6.51 -2.38 -0.02 0.50 16 36 H 0.10 0.42 8.08 -2.39 -0.02 0.40 16 37 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.42 5.63 7.77 -92.71 -0.72 4.91 16 42 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.39 7.59 9.05 -74.06 -0.67 6.92 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.37 16.16 5.53 -92.70 -0.51 15.65 16 48 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -78.08 402.12 0.57 -77.51 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.97 Total: 28.43 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.86 Total: -3.60 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -4.01 Total: -113.93 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.99 Total: -33.27 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -78.08 0.57 -77.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699073240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.594 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds