Wall clock time and date at job start Tue Mar 31 2020 22:06:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47020 * 2 1
4 4 O 1.42896 * 109.47469 * 120.00072 * 2 1 3
5 5 C 1.42902 * 113.99918 * 89.99783 * 4 2 1
6 6 C 1.53003 * 109.46986 * 180.02562 * 5 4 2
7 7 C 1.50699 * 109.46847 * 180.02562 * 6 5 4
8 8 O 1.21277 * 120.00620 * 359.97438 * 7 6 5
9 9 N 1.34780 * 119.99786 * 180.02562 * 7 6 5
10 10 C 1.46496 * 120.00061 * 179.97438 * 9 7 6
11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7
12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9
13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10
14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11
15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12
16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13
17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14
18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15
19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15
20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16
21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17
23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17
24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17
25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12
26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9
27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10
28 28 H 1.08998 * 109.46754 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47094 * 299.99809 * 1 2 3
30 30 H 1.08995 * 109.47443 * 60.00118 * 1 2 3
31 31 H 1.08998 * 109.47094 * 240.00191 * 2 1 3
32 32 H 1.09001 * 109.47296 * 179.97438 * 3 2 1
33 33 H 1.09003 * 109.47215 * 300.00311 * 3 2 1
34 34 H 1.09004 * 109.46745 * 59.99830 * 3 2 1
35 35 H 1.09000 * 109.46701 * 60.00463 * 5 4 2
36 36 H 1.08995 * 109.47312 * 300.00620 * 5 4 2
37 37 H 1.08991 * 109.47422 * 60.00328 * 6 5 4
38 38 H 1.09002 * 109.47232 * 299.99938 * 6 5 4
39 39 H 0.97003 * 120.00316 * 359.97438 * 9 7 6
40 40 H 1.09000 * 109.47450 * 60.00120 * 10 9 7
41 41 H 1.09004 * 109.47141 * 299.99581 * 10 9 7
42 42 H 1.07997 * 119.98840 * 359.97438 * 12 11 10
43 43 H 1.07998 * 119.98077 * 180.25523 * 13 12 11
44 44 H 1.09004 * 109.47210 * 149.71995 * 15 14 13
45 45 H 1.08994 * 109.47121 * 29.71965 * 15 14 13
46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14
47 47 H 0.96999 * 119.99739 * 180.02562 * 20 19 17
48 48 H 1.07998 * 120.01636 * 180.23671 * 25 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.2001 -2.0782 0.9885
6 6 2.7080 -2.6927 2.2944
7 6 2.9129 -4.1738 2.1063
8 8 2.6756 -4.6874 1.0336
9 7 3.3589 -4.9278 3.1305
10 6 3.5575 -6.3677 2.9479
11 6 4.0567 -6.9731 4.2345
12 6 5.4030 -7.2413 4.3957
13 6 5.8620 -7.7913 5.5778
14 6 4.9736 -8.0838 6.5963
15 6 5.4749 -8.6882 7.8825
16 7 5.4477 -10.1492 7.7786
17 6 5.8665 -10.9185 8.8313
18 1 6.2126 -10.4480 9.7398
19 6 5.8461 -12.3028 8.7308
20 7 5.4247 -12.8760 7.6234
21 14 6.4167 -13.3520 10.1670
22 1 6.8380 -12.4719 11.2864
23 1 5.3021 -14.2244 10.6163
24 1 7.5631 -14.1940 9.7402
25 6 3.6274 -7.8165 6.4374
26 6 3.1671 -7.2606 5.2555
27 9 1.8510 -6.9981 5.0993
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 3.1300 1.4426 0.0005
33 1 1.6766 1.9564 -0.8900
34 1 1.6765 1.9563 0.8900
35 1 2.9320 -2.2466 0.1985
36 1 1.2539 -2.5433 0.7123
37 1 1.9759 -2.5243 3.0841
38 1 3.6542 -2.2276 2.5710
39 1 3.5484 -4.5171 3.9887
40 1 4.2900 -6.5362 2.1585
41 1 2.6114 -6.8328 2.6710
42 1 6.0972 -7.0172 3.5993
43 1 6.9147 -7.9967 5.7045
44 1 4.8359 -8.3706 8.7065
45 1 6.4966 -8.3559 8.0662
46 1 5.1371 -10.5718 6.9625
47 1 5.4102 -13.8434 7.5532
48 1 2.9342 -8.0415 7.2345
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001701063349.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:13
Heat of formation + Delta-G solvation = -109.115356 kcal
Electronic energy + Delta-G solvation = -27657.422163 eV
Core-core repulsion = 23433.579481 eV
Total energy + Delta-G solvation = -4223.842682 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-48.85051 -40.15767 -39.18671 -38.60469 -35.67709 -34.42296 -33.74158 -32.29918
-31.25691 -30.54066 -30.08185 -27.68526 -27.22967 -24.87674 -23.60595 -22.83946
-22.41397 -21.75370 -20.82998 -20.59081 -17.88067 -17.52796 -16.91210 -16.69582
-16.49796 -16.43095 -16.26155 -15.52069 -15.36713 -15.11500 -15.02168 -14.67538
-14.10465 -14.03168 -13.80695 -13.53027 -13.37688 -13.36077 -13.25409 -12.91201
-12.83281 -12.64410 -12.30929 -12.22375 -12.05654 -11.86546 -11.82188 -11.56722
-11.44999 -11.10958 -11.08356 -10.87702 -10.69080 -10.24123 -10.09763 -9.94869
-9.84815 -9.35146 -8.98087 -8.83936 -8.54890 -7.02807 -5.83222 -3.14046
1.08540 1.29900 2.35524 2.72932 3.39517 3.43140 3.46107 3.47597
3.73104 4.26328 4.36023 4.41574 4.49982 4.55757 4.57718 4.67484
4.74380 4.74910 4.84246 5.05816 5.10466 5.15204 5.16024 5.24674
5.35584 5.40076 5.43580 5.44394 5.49775 5.50037 5.50886 5.55726
5.73979 5.79020 5.90436 6.03521 6.06663 6.09837 6.12738 6.32981
6.36388 6.46176 6.83893 6.87362 6.97024 7.19922 7.63282 7.91541
8.33877 9.45918 9.99770 10.35246 11.39107
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.037143 B = 0.001530 C = 0.001526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 753.656555 B =18291.660491 C =18342.406474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.082 3.918
3 C -0.150 4.150
4 O -0.387 6.387
5 C 0.078 3.922
6 C -0.140 4.140
7 C 0.518 3.482
8 O -0.543 6.543
9 N -0.722 5.722
10 C 0.168 3.832
11 C -0.159 4.159
12 C -0.075 4.075
13 C -0.115 4.115
14 C -0.036 4.036
15 C 0.184 3.816
16 N -0.727 5.727
17 C -0.245 4.245
18 H 0.073 0.927
19 C -0.011 4.011
20 N -0.930 5.930
21 Si 0.909 3.091
22 H -0.279 1.279
23 H -0.291 1.291
24 H -0.291 1.291
25 C -0.140 4.140
26 C 0.111 3.889
27 F -0.139 7.139
28 H 0.057 0.943
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.069 0.931
34 H 0.063 0.937
35 H 0.058 0.942
36 H 0.057 0.943
37 H 0.103 0.897
38 H 0.103 0.897
39 H 0.404 0.596
40 H 0.081 0.919
41 H 0.078 0.922
42 H 0.131 0.869
43 H 0.133 0.867
44 H 0.032 0.968
45 H 0.034 0.966
46 H 0.386 0.614
47 H 0.256 0.744
48 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.606 26.422 -13.855 30.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.025 3.975
3 C -0.207 4.207
4 O -0.306 6.306
5 C 0.001 3.999
6 C -0.180 4.180
7 C 0.304 3.696
8 O -0.421 6.421
9 N -0.374 5.374
10 C 0.045 3.955
11 C -0.160 4.160
12 C -0.094 4.094
13 C -0.134 4.134
14 C -0.037 4.037
15 C 0.057 3.943
16 N -0.371 5.371
17 C -0.376 4.376
18 H 0.091 0.909
19 C -0.207 4.207
20 N -0.578 5.578
21 Si 0.740 3.260
22 H -0.205 1.205
23 H -0.218 1.218
24 H -0.218 1.218
25 C -0.159 4.159
26 C 0.091 3.909
27 F -0.118 7.118
28 H 0.076 0.924
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.088 0.912
34 H 0.082 0.918
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.121 0.879
38 H 0.121 0.879
39 H 0.238 0.762
40 H 0.099 0.901
41 H 0.096 0.904
42 H 0.149 0.851
43 H 0.151 0.849
44 H 0.050 0.950
45 H 0.052 0.948
46 H 0.220 0.780
47 H 0.066 0.934
48 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -5.733 26.088 -14.299 30.298
hybrid contribution -0.054 -0.886 0.731 1.150
sum -5.787 25.203 -13.568 29.202
Atomic orbital electron populations
1.22309 0.95949 1.02535 1.02606 1.22072 0.93695 0.93704 0.88078
1.21870 1.01827 0.94459 1.02554 1.87848 1.86741 1.20045 1.36000
1.22137 1.00528 0.80977 0.96247 1.21470 1.04689 0.91746 1.00057
1.20405 0.76519 0.88724 0.83912 1.90725 1.50811 1.74545 1.26004
1.46073 1.67786 1.08653 1.14879 1.20049 1.01814 0.79586 0.94054
1.19717 0.94134 1.06525 0.95656 1.20910 0.93497 0.97328 0.97630
1.21215 1.00668 0.98773 0.92724 1.20263 0.92131 0.94093 0.97179
1.19738 0.97889 0.86324 0.90371 1.42326 1.78807 0.98205 1.17793
1.19273 1.35934 0.88290 0.94104 0.90902 1.24772 1.01861 0.96585
0.97484 1.69684 1.52689 1.09458 1.25960 0.86094 0.77926 0.80460
0.81535 1.20458 1.21785 1.21774 1.21139 0.96810 1.00964 0.96969
1.17532 0.77521 1.00757 0.95097 1.91486 1.32486 1.91869 1.95936
0.92353 0.91726 0.91628 0.92099 0.91964 0.91233 0.91752 0.92418
0.92440 0.87893 0.87906 0.76204 0.90065 0.90360 0.85105 0.84922
0.95043 0.94848 0.78000 0.93424 0.84444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.08 9.53 37.16 0.35 -0.73 16
2 C 0.08 0.57 3.34 -26.73 -0.09 0.48 16
3 C -0.15 -0.82 9.56 37.16 0.36 -0.47 16
4 O -0.39 -3.40 9.99 -35.23 -0.35 -3.76 16
5 C 0.08 0.67 5.04 37.16 0.19 0.86 16
6 C -0.14 -1.06 6.07 -27.88 -0.17 -1.22 16
7 C 0.52 5.35 7.83 -10.98 -0.09 5.27 16
8 O -0.54 -7.62 15.98 5.56 0.09 -7.54 16
9 N -0.72 -6.82 5.55 -61.47 -0.34 -7.16 16
10 C 0.17 1.85 5.52 -5.20 -0.03 1.83 16
11 C -0.16 -1.91 5.25 -104.55 -0.55 -2.46 16
12 C -0.08 -0.88 9.67 -39.59 -0.38 -1.26 16
13 C -0.12 -1.59 9.70 -39.57 -0.38 -1.97 16
14 C -0.04 -0.57 5.25 -104.63 -0.55 -1.12 16
15 C 0.18 3.50 6.38 -5.19 -0.03 3.46 16
16 N -0.73 -17.88 5.59 -61.09 -0.34 -18.22 16
17 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16
18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
20 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16
21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16
22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
25 C -0.14 -2.11 9.68 -39.51 -0.38 -2.49 16
26 C 0.11 1.53 7.25 -39.41 -0.29 1.24 16
27 F -0.14 -1.98 16.66 2.25 0.04 -1.94 16
28 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16
32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.06 0.51 8.04 -51.93 -0.42 0.10 16
36 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16
37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.40 3.04 8.46 -40.82 -0.35 2.69 16
40 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16
41 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16
42 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16
43 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16
44 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16
45 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16
46 H 0.39 10.18 7.66 -40.82 -0.31 9.87 16
47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
48 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16
LS Contribution 410.32 15.07 6.18 6.18
Total: -1.00 -32.34 410.32 -9.05 -41.39
By element:
Atomic # 1 Polarization: 14.73 SS G_CDS: -7.74 Total: 6.99 kcal
Atomic # 6 Polarization: -3.53 SS G_CDS: -2.29 Total: -5.82 kcal
Atomic # 7 Polarization: -52.50 SS G_CDS: 0.04 Total: -52.46 kcal
Atomic # 8 Polarization: -11.03 SS G_CDS: -0.26 Total: -11.29 kcal
Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -32.34 -9.05 -41.39 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701063349.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.730 kcal
(2) G-P(sol) polarization free energy of solvation -32.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds