Wall clock time and date at job start Tue Mar 31 2020 22:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 O 1.42896 * 109.47469 * 120.00072 * 2 1 3 5 5 C 1.42902 * 113.99918 * 89.99783 * 4 2 1 6 6 C 1.53003 * 109.46986 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46847 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00620 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00061 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01073 * 260.01872 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.72487 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01389 * 80.00236 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.97438 * 26 11 10 28 28 H 1.08998 * 109.46754 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47094 * 299.99809 * 1 2 3 30 30 H 1.08995 * 109.47443 * 60.00118 * 1 2 3 31 31 H 1.08998 * 109.47094 * 240.00191 * 2 1 3 32 32 H 1.09001 * 109.47296 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47215 * 300.00311 * 3 2 1 34 34 H 1.09004 * 109.46745 * 59.99830 * 3 2 1 35 35 H 1.09000 * 109.46701 * 60.00463 * 5 4 2 36 36 H 1.08995 * 109.47312 * 300.00620 * 5 4 2 37 37 H 1.08991 * 109.47422 * 60.00328 * 6 5 4 38 38 H 1.09002 * 109.47232 * 299.99938 * 6 5 4 39 39 H 0.97003 * 120.00316 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.47450 * 60.00120 * 10 9 7 41 41 H 1.09004 * 109.47141 * 299.99581 * 10 9 7 42 42 H 1.07997 * 119.98840 * 359.97438 * 12 11 10 43 43 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 44 44 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 45 45 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 46 46 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 48 48 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7080 -2.6927 2.2944 7 6 2.9129 -4.1738 2.1063 8 8 2.6756 -4.6874 1.0336 9 7 3.3589 -4.9278 3.1305 10 6 3.5575 -6.3677 2.9479 11 6 4.0567 -6.9731 4.2345 12 6 5.4030 -7.2413 4.3957 13 6 5.8620 -7.7913 5.5778 14 6 4.9736 -8.0838 6.5963 15 6 5.4749 -8.6882 7.8825 16 7 5.4477 -10.1492 7.7786 17 6 5.8665 -10.9185 8.8313 18 1 6.2126 -10.4480 9.7398 19 6 5.8461 -12.3028 8.7308 20 7 5.4247 -12.8760 7.6234 21 14 6.4167 -13.3520 10.1670 22 1 6.8380 -12.4719 11.2864 23 1 5.3021 -14.2244 10.6163 24 1 7.5631 -14.1940 9.7402 25 6 3.6274 -7.8165 6.4374 26 6 3.1671 -7.2606 5.2555 27 9 1.8510 -6.9981 5.0993 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 2.9320 -2.2466 0.1985 36 1 1.2539 -2.5433 0.7123 37 1 1.9759 -2.5243 3.0841 38 1 3.6542 -2.2276 2.5710 39 1 3.5484 -4.5171 3.9887 40 1 4.2900 -6.5362 2.1585 41 1 2.6114 -6.8328 2.6710 42 1 6.0972 -7.0172 3.5993 43 1 6.9147 -7.9967 5.7045 44 1 4.8359 -8.3706 8.7065 45 1 6.4966 -8.3559 8.0662 46 1 5.1371 -10.5718 6.9625 47 1 5.4102 -13.8434 7.5532 48 1 2.9342 -8.0415 7.2345 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701063349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:13 Heat of formation + Delta-G solvation = -109.115356 kcal Electronic energy + Delta-G solvation = -27657.422163 eV Core-core repulsion = 23433.579481 eV Total energy + Delta-G solvation = -4223.842682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.85051 -40.15767 -39.18671 -38.60469 -35.67709 -34.42296 -33.74158 -32.29918 -31.25691 -30.54066 -30.08185 -27.68526 -27.22967 -24.87674 -23.60595 -22.83946 -22.41397 -21.75370 -20.82998 -20.59081 -17.88067 -17.52796 -16.91210 -16.69582 -16.49796 -16.43095 -16.26155 -15.52069 -15.36713 -15.11500 -15.02168 -14.67538 -14.10465 -14.03168 -13.80695 -13.53027 -13.37688 -13.36077 -13.25409 -12.91201 -12.83281 -12.64410 -12.30929 -12.22375 -12.05654 -11.86546 -11.82188 -11.56722 -11.44999 -11.10958 -11.08356 -10.87702 -10.69080 -10.24123 -10.09763 -9.94869 -9.84815 -9.35146 -8.98087 -8.83936 -8.54890 -7.02807 -5.83222 -3.14046 1.08540 1.29900 2.35524 2.72932 3.39517 3.43140 3.46107 3.47597 3.73104 4.26328 4.36023 4.41574 4.49982 4.55757 4.57718 4.67484 4.74380 4.74910 4.84246 5.05816 5.10466 5.15204 5.16024 5.24674 5.35584 5.40076 5.43580 5.44394 5.49775 5.50037 5.50886 5.55726 5.73979 5.79020 5.90436 6.03521 6.06663 6.09837 6.12738 6.32981 6.36388 6.46176 6.83893 6.87362 6.97024 7.19922 7.63282 7.91541 8.33877 9.45918 9.99770 10.35246 11.39107 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.001530 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.656555 B =18291.660491 C =18342.406474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.140 4.140 7 C 0.518 3.482 8 O -0.543 6.543 9 N -0.722 5.722 10 C 0.168 3.832 11 C -0.159 4.159 12 C -0.075 4.075 13 C -0.115 4.115 14 C -0.036 4.036 15 C 0.184 3.816 16 N -0.727 5.727 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.140 4.140 26 C 0.111 3.889 27 F -0.139 7.139 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.386 0.614 47 H 0.256 0.744 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 26.422 -13.855 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.180 4.180 7 C 0.304 3.696 8 O -0.421 6.421 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.160 4.160 12 C -0.094 4.094 13 C -0.134 4.134 14 C -0.037 4.037 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.159 4.159 26 C 0.091 3.909 27 F -0.118 7.118 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.238 0.762 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.220 0.780 47 H 0.066 0.934 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.733 26.088 -14.299 30.298 hybrid contribution -0.054 -0.886 0.731 1.150 sum -5.787 25.203 -13.568 29.202 Atomic orbital electron populations 1.22309 0.95949 1.02535 1.02606 1.22072 0.93695 0.93704 0.88078 1.21870 1.01827 0.94459 1.02554 1.87848 1.86741 1.20045 1.36000 1.22137 1.00528 0.80977 0.96247 1.21470 1.04689 0.91746 1.00057 1.20405 0.76519 0.88724 0.83912 1.90725 1.50811 1.74545 1.26004 1.46073 1.67786 1.08653 1.14879 1.20049 1.01814 0.79586 0.94054 1.19717 0.94134 1.06525 0.95656 1.20910 0.93497 0.97328 0.97630 1.21215 1.00668 0.98773 0.92724 1.20263 0.92131 0.94093 0.97179 1.19738 0.97889 0.86324 0.90371 1.42326 1.78807 0.98205 1.17793 1.19273 1.35934 0.88290 0.94104 0.90902 1.24772 1.01861 0.96585 0.97484 1.69684 1.52689 1.09458 1.25960 0.86094 0.77926 0.80460 0.81535 1.20458 1.21785 1.21774 1.21139 0.96810 1.00964 0.96969 1.17532 0.77521 1.00757 0.95097 1.91486 1.32486 1.91869 1.95936 0.92353 0.91726 0.91628 0.92099 0.91964 0.91233 0.91752 0.92418 0.92440 0.87893 0.87906 0.76204 0.90065 0.90360 0.85105 0.84922 0.95043 0.94848 0.78000 0.93424 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 9.53 37.16 0.35 -0.73 16 2 C 0.08 0.57 3.34 -26.73 -0.09 0.48 16 3 C -0.15 -0.82 9.56 37.16 0.36 -0.47 16 4 O -0.39 -3.40 9.99 -35.23 -0.35 -3.76 16 5 C 0.08 0.67 5.04 37.16 0.19 0.86 16 6 C -0.14 -1.06 6.07 -27.88 -0.17 -1.22 16 7 C 0.52 5.35 7.83 -10.98 -0.09 5.27 16 8 O -0.54 -7.62 15.98 5.56 0.09 -7.54 16 9 N -0.72 -6.82 5.55 -61.47 -0.34 -7.16 16 10 C 0.17 1.85 5.52 -5.20 -0.03 1.83 16 11 C -0.16 -1.91 5.25 -104.55 -0.55 -2.46 16 12 C -0.08 -0.88 9.67 -39.59 -0.38 -1.26 16 13 C -0.12 -1.59 9.70 -39.57 -0.38 -1.97 16 14 C -0.04 -0.57 5.25 -104.63 -0.55 -1.12 16 15 C 0.18 3.50 6.38 -5.19 -0.03 3.46 16 16 N -0.73 -17.88 5.59 -61.09 -0.34 -18.22 16 17 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 C -0.14 -2.11 9.68 -39.51 -0.38 -2.49 16 26 C 0.11 1.53 7.25 -39.41 -0.29 1.24 16 27 F -0.14 -1.98 16.66 2.25 0.04 -1.94 16 28 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.51 8.04 -51.93 -0.42 0.10 16 36 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 3.04 8.46 -40.82 -0.35 2.69 16 40 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 41 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 42 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16 43 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 45 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.39 10.18 7.66 -40.82 -0.31 9.87 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -32.34 410.32 -9.05 -41.39 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.74 Total: 6.99 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.29 Total: -5.82 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.04 Total: -52.46 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.26 Total: -11.29 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.34 -9.05 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701063349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.730 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds